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Bioinformatics program for PhD students 2020-2021
This mandatory training program, required for all Institut Pasteur PhD students, begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then can […]
Hub d’Analyse d’Images
Hub de Bioinformatique et Biostatistique
INCEPTION – INstitut Convergences pour l’étude de l’Émergence des Pathologies au Travers des Individus et des populatiONs
Biologie Computationnelle
Centre de Ressources et Recherches Technologiques
Vincent Guillemot
Christophe Malabat
Jean-Yves Tinevez
Marie-Agnès Dillies
Frédéric LEMOINE
Nicolas Maillet
Blaise Li
Stevenn Volant
Pascal Campagne
Hugo Varet
Hanna Julienne
Violaine Saint-André
Julien Guglielmini
Thomas Bigot
Quentin Giai Gianetto
Claudia Chica
Rachel Legendre
Adrien Pain
Natalia Pietrosemoli
Emeline Perthame
Stéphane Rigaud
Benoît Lelandais
Dmitry Ershov
Sébastien MELLA
Anđela Davidović
Thomas Obadia
Véronique Hourdel
Amine Ghozlane
Alexis Criscuolo
Amaury Vaysse
2020-10-15 09:30:00
2021-06-03 17:00:00
Europe/Paris
Bioinformatics program for PhD students 2020-2021
This mandatory training program, required for all Institut Pasteur PhD students, begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then can […]
25-28 Rue du Dr Roux, 75015 Paris, France
High Throughput Sequencing Data Analysis on Genomics, Metagenomics and Transcriptomics
The National Center for Aquaculture and Marine Research (CENAIM) of the Polytechnic School of the Litoral (Ecuador), the Computational Biology and Microbial Ecology Group (BCEM) of the Universidad de los Andes (Colombia) and the […]
2018-09-13 09:00:00
2018-09-21 17:00:00
Europe/Paris
High Throughput Sequencing Data Analysis on Genomics, Metagenomics and Transcriptomics
The National Center for Aquaculture and Marine Research (CENAIM) of the Polytechnic School of the Litoral (Ecuador), the Computational Biology and Microbial Ecology Group (BCEM) of the Universidad de los Andes (Colombia) and the […]
Escuela superior politécnica del litoral, Guayaquil, Ecuador
Morning session – Introduction to NGS data analysis
The Hub of Bioinformatics and Biostatistics at the Institut Pasteur organizes thematic courses open to everybody. The second session, entitled “Introduction to NGS data analysis” will take place every Tuesday, from the May 10th […]
2016-05-10 09:00:00
2016-06-28 12:00:00
Europe/Paris
Morning session – Introduction to NGS data analysis
The Hub of Bioinformatics and Biostatistics at the Institut Pasteur organizes thematic courses open to everybody. The second session, entitled “Introduction to NGS data analysis” will take place every Tuesday, from the May 10th […]
28 Rue du Dr Roux, Paris, France
Introduction to Data Analysis
This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […]
2018-10-22 09:00:00
2018-11-20 00:00:00
Europe/Paris
Introduction to Data Analysis
This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […]
28 Rue du Dr Roux, Paris, France
Hands-on course on High Throughput Sequencing data analysis: Genomics, Transcriptomics, Epigenomics
The University of Los Andes and the Hub of Bioinformatics and Biostatistics of the C3BI (Center of Bioinformatics Biostatistics and Integrative Biology) at Institut Pasteur will organize this Hands-on course aimed at students/researchers that […]
2017-11-27 09:00:00
2017-12-01 17:00:00
Europe/Paris
Hands-on course on High Throughput Sequencing data analysis: Genomics, Transcriptomics, Epigenomics
The University of Los Andes and the Hub of Bioinformatics and Biostatistics of the C3BI (Center of Bioinformatics Biostatistics and Integrative Biology) at Institut Pasteur will organize this Hands-on course aimed at students/researchers that […]
Bogota - Bogotá, Colombie
Projets
Logiciel
Outils
CV
Professional experience
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Oct. 2015 – now
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Senior Bioinformatician
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Hub Bioinformatics and Biostatistics – DBC Paris – France
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July 2014 – May 2015
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Assistant Professor
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Universidad de los Andes Bogotá – Colombia
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August 2012 – June 2014
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Postdoctoral position
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Institut de Biologie de l’Ecole Normale Superieure Paris – France
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March 2010 – July 2012
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Postdoctoral position
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Commissariat à l’énergie atomique Evry – France
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Education
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Oct. 2005 – May 2009
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PhD in Computational Biology
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European Molecular Biology Laboratory Heidelberg – Germany
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Oct. 2003 – Jan. 2005
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Masters in Scientific Calculation
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“Sapienza” Università di Roma Roma – Italia
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1997 – 2002
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B.Sc. Biology
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Universidad Nacional de Colombia Bogotà – Colombia |
Publications
Télécharger-
2021SCHNAPPs – Single Cell sHiNy APPlication(s)., J Immunol Methods 2021 12; 499(): 113176.
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2021The CovR regulatory network drives the evolution of Group B Streptococcus virulence., PLoS Genet 2021 Sep; 17(9): e1009761.
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2018SUMO safeguards somatic and pluripotent cell identities by enforcing distinct chromatin states, Cell Stem Cell. 2018 Nov 1;23(5):742-757.e8. doi: 10.1016/j.stem.2018.10.001.
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2017Comparative epigenomics in the Brassicaceae reveals two evolutionarily conserved modes of PRC2-mediated gene regulation, Genome Biol. 2017 Oct;18(1):207.
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2015Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation, Nat Plants 2015;1:14023.
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2011ELM–the database of eukaryotic linear motifs, Nucleic Acids Res. 2012 Jan;40(Database issue):D242-51.
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2010Phospho.ELM: a database of phosphorylation sites–update 2011, Nucleic Acids Res. 2011 Jan;39(Database issue):D261-7.
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2009ELM: the status of the 2010 eukaryotic linear motif resource, Nucleic Acids Res. 2010 Jan;38(Database issue):D167-80.
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2009Evidence for the concerted evolution between short linear protein motifs and their flanking regions, PLoS ONE 2009;4(7):e6052.
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2008KEPE–a motif frequently superimposed on sumoylation sites in metazoan chromatin proteins and transcription factors, Bioinformatics 2009 Jan;25(1):1-5.
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