Présentation
Every Tuesday mornings from 10am to 12am, Hub engineers are enlisted to provide a direct support to any members of Institut Pasteur seeking help on bioinformatics or biostatistics related subjects. You can come directly to Yersin Building (24), Ground Floor, or if you work remotely you can also come virtually using Teams 
.
Please note that open desks are suspended during Christmas & summer breaks.
If you need urgent help from the Hub at that time, please ask a short questions submitted through our web site or using the mail alias hub@pasteur.fr.
Hub engineers can provide support on :
- Design of experiment (from the statistical point)
- Analysis & integration of various types of data, including but not limited to :
- OMICS data
- epidemiological data
- time series data
- Statistics methods
- Software development
- Web tool development
- Database development
- Code review
Please use the following table to see available hub members for future sessions
| Sessions | Group | Hub members |
|---|---|---|
|
01-10-2024 11-02-2025 17-06-2025 |
Group 1 |
Thomas Bigot – Sequence alignments, databases, taxonomic classification, divergent sequences detection, phylogeny Almira Chervova – Epigenomics, Transcriptomics, Statistics, Single cell Damien Mornico – Genomics, Paleogenomics, (Transcriptomics) Rachel Torchet – User eXperience Design, Web interface conception Stevenn Volant – Statistics, Metagenomics, Rshiny |
|
08-10-2024 18-02-2025 24-06-2025 |
Group 2 |
Amine Ghozlane – Metagenomic, Software Development Julien Guglielmini – Phylogenetics, Genomics Vincent Guillemot – Statistics,R Amaury Vaysse – Genomics, R, GWAS |
|
15-10-2024 25-02-2025 01-07-2025 |
Group 3 |
Frédéric Lemoine – Phylogenetics, Software development, Transcriptomics Nicolas Maillet – Algorithmics, Software development, Metagenomics, Stringology Arnaud Meng – Single Cell, Transcriptomics, Mass spectometry, pipeline Development Thomas Obadia – Statistics, Epidemiology |
|
22-10-2024 04-03-2025 08-07-2025 |
Group 4 |
Joseph Josephides – Single Cell, Genomics, Transcriptomics, Machine Learning Rachel Legendre – Transcriptomics, Epigenomics Simon Malesys – Web development and databases, Javascript, Vue.js, Node.js Anna Zhukova – Phylogenetics, Software development, Algorithms |
|
29-10-2024 11-03-2025 15-07-2025 |
Group 5 |
Samar Berreira Ibraim Johann Dreo – Optimization/Hyper-parameters setting, Algorithmics, Ontology building, Mathematical modeling, Software development, Decision support systems Hanna Julienne – Statistics, Development, Genomics Emmanuelle Permal – Genomics, Development, Transcriptomics For 29-10-2024 session : Emmanuelle Permal will be replaced by Julien Fumey |
|
05-11-2024 18-03-2025 22-07-2025 |
Group 6 |
Agnès Baud – Metagenomic Quentin Giai Gianetto – Statistics, R, Proteomics, Protein-protein interaction networks, Pathway enrichment analysis Blaise Li – Software development, Automation, Reproducibility, Python, command-line Marie Schmit – Software development, Data integration For 05-11-2024 session : Blaise Li will be replaced by Najwa Taib |
|
12-11-2024 25-03-2025 29-07-2025 |
Group 7 |
Bryan Brancotte – Kubernetes, Web development, Software development Pascal Campagne – Statistics, Genomics, GWAS Natalia Pietrosemoli – Systems bioinformatics, Transcriptomics, Proteomics, Metabolomics Najwa Taib – Phylogenetics For 12-11-2024 session : Najwa Taib will be replaced by Blaise Li |
|
19-11-2024 01-04-2025 |
Group 8 |
Claudia Chica – Transcriptomics, Epigenomics, Single cell Fabien Mareuil – Web development, Galaxy, Structural bioinformatics Adrien Pain – Genomics, Transcriptomics Emeline Perthame – Statistics, Transcriptomics, Proteomics |
|
26-11-2024 08-04-2025 |
Group 9 |
Stéphane Descorps-Declère – Structural annotation Eva Eleftheriou – Epigenomics, Genomics, Transcriptomics Elise Jacquemet – Statistics, Transcriptomics Bertrand Néron – Algorithmics, Software development, Database management For 26-11-2024 session : Elise Jacquemet will be replaced by Hugo Varet |
|
03-12-2024 15-04-2025 |
Group 10 |
Thomas Cokelaer – Algorithmics, Genomics, Transcriptomics, Assembly, Reproductible pipeline Bernd Jagla – Single cell, Cytometry data analysis, Transcriptomics Gaël Millot – Statistics, Genomics, Image analysis Nicolas Traut – Neuroimaging, Genomics |
|
10-12-2024 22-04-2025 |
Group 11 |
Elodie Chapeaublanc – Web development, Database management Kevin Da Silva – Anđela Davidović – Mathematical analysis and modelling, scientific computing, numerical simulations, parameter inference, basics in data analysis, statistics and AI Yann loe-Mie – Genomics, Transcriptomics, Epigenomics, Single cell |
|
17-12-2024 29-04-2025 |
Group 12 |
François Laurent – Software development, Modelisation, Statistics Pierre Lechat – Software development, Variant calling Olivier Mirabeau – Transcriptomics, Genomics, Statistics, Single cell Maguelonne Roux – Genomics Raphaël Tackx – Web development |
|
24-12-2024 06-05-2025 |
Group 13 |
Yoann Dufresne – Algorithmic, Software optimization, Human pangenomic Sébastien Mella – Single Cell, Statistics Juliette Meyer – Statistics Violaine Saint-André – Epigenomics, Multi-dimensional data analysis and integration, Transcriptional Regulatory Networks, Human cohorts |
|
07-01-2025 13-05-2025 |
Group 14 |
Julien Fumey – Genomics, Phylogenetics, Web dev, Nextflow Julia Kende – Phylogenetics, Software development & Algorithmics Benoît Lelandais – Image analysis, Software development, Artificial Intelligence Rania Ouazahrou – Transcriptomics, Genomics For 07-01-2025 session : Julien Fumey will be replaced by Emmanuelle Permal |
|
03-09-2024 14-01-2025 20-05-2025 |
Group 15 |
Victoire Baillet – Genomics, Epigenomics, Gene regulation, Genetics Jeliyah Clark – Epidemiology, systems biology, transcriptomics Freddy Cliquet – Algorithmics, Statistics, System biology Vincent Laville – Statistics, Development, Genomics |
|
10-09-2024 21-01-2025 27-05-2025 |
Group 16 |
Juliette Bonche – User eXperience Design, Web interface conception Amanda Dieuaide – Web development Etienne Kornobis – Software development, Transcriptomics, Genomics Nathalie Lehmann – Single Cell, Transcriptomics, Pipeline development, Genome annotation Corinne Maufrais – Genomics, Data management |
|
17-09-2024 28-01-2025 03-06-2025 |
Group 17 |
Artem Baidaliuk – Virus discovery in metagenomic/metatranscriptomic data Stephan Fischer – Single Cell, Genomics Mickael Orgeur – Genomics, Transcriptomics Amandine Perrin – Software development, Comparative genomics |
|
24-09-2024 04-02-2025 10-06-2025 |
Group 18 |
Jérôme Bourret Daniele Capocefalo – Transcriptomics, Single cell, Multidimensional analysis, Biological Networks,Network theory, Python Rémi Planel – Web development, Database management, Galaxy Hugo Varet – Statistics, R, Metabolomics |