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Un petit guide pour l'utilisation de la recherche avancée :

  • Tip 1. Utilisez "" afin de chercher une expression exacte.
    Exemple : "division cellulaire"
  • Tip 2. Utilisez + afin de rendre obligatoire la présence d'un mot.
    Exemple : +cellule +stem
  • Tip 3. Utilisez + et - afin de forcer une inclusion ou exclusion d'un mot.
    Exemple : +cellule -stem
e.g. searching for members in projects tagged cancer
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Domaines Scientifiques
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Présentation

Désolé, cet article est seulement disponible en EN.

Équipements

Booking site

IAH workstation ‘Rammstein’ • Corsair • One

Software featured. This PC hosts two commercial softwares for image analysis: Zeiss arivis Pro, an image analysis software specialized for the analysis of large images, typically acquired with a light-sheet microscope. Visiopharm, an industry-standard […]

IAH workstation ‘Tool’ • Intel-Nvidia-MSI • PC

This PC is meant for Image Analysis; it is equipped with a strong graphic processor, which allows usage of hardware-accelerated analysis software. CPU Intel 3.60 Ghz 6 Cores/12 Threads RAM 196 Gb DD4 GPU […]

Logiciel

Anciens Membres

2000
2000
Name
Position
2018
2019
Emma Spanjaard
Research Engineer
2017
2020
Sébastien Herbert
Research Engineer
2018
2021
Dmitry Ershov
Research Engineer
2019
2021
Marion Louveaux
Research Engineer
2020
2020
Benjamin Dorra
Intern
2023
2023
Chérif Latrèche
Intern

Cours

Principles and applications of fluorescence microscopy

This course is designed for Master’s and international PhD students planning to use advanced live-cell fluorescence microscopy in their future research. For more information and program, please, visit the course webpage. Program / Content […]

2025-03-10 09:00:00 2025-03-21 18:00:00 Europe/Paris Principles and applications of fluorescence microscopy This course is designed for Master’s and international PhD students planning to use advanced live-cell fluorescence microscopy in their future research. For more information and program, please, visit the course webpage. Program / Content […] Institut Pasteur, Rue du Docteur Roux, Paris, France

NEUBIAS: network of European BioImage analysts

The Bioimage Analysis course combines theory and hands-on practice to provide participants with essential tools and techniques for advanced image analysis in the Life Sciences. It is structured around two distinct tracks: the “Early […]

2025-05-12 09:00:00 2025-05-16 18:00:00 Europe/Paris NEUBIAS: network of European BioImage analysts The Bioimage Analysis course combines theory and hands-on practice to provide participants with essential tools and techniques for advanced image analysis in the Life Sciences. It is structured around two distinct tracks: the “Early […] Institut Pasteur, Rue du Docteur Roux, Paris, France

Introduction to BioImage Analysis with Python for Life Scientists – A distributed in-person training course

Interested in learning python for your image analysis needs? Want to understand how Jupyter notebooks can make your analysis workflows easier? The upcoming distributed “Image analysis with Python” beginners course is your chance. The […]

2024-10-07 09:30:00 2024-10-09 18:00:00 Europe/Paris Introduction to BioImage Analysis with Python for Life Scientists – A distributed in-person training course Interested in learning python for your image analysis needs? Want to understand how Jupyter notebooks can make your analysis workflows easier? The upcoming distributed “Image analysis with Python” beginners course is your chance. The […] Institut Pasteur, Rue du Docteur Roux, Paris, France

Bioinformatics program for PhD students 2023 2024

This training program in statistics, bioinformatics and image analysis, financed by INCEPTION program, begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, […]

2023-10-23 09:30:00 2024-06-28 17:00:00 Europe/Paris Bioinformatics program for PhD students 2023 2024 This training program in statistics, bioinformatics and image analysis, financed by INCEPTION program, begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, […] 25-28 Rue du Docteur Roux, Paris, France

NEUBIAS Pasteur course on Bioimage Analysis

Paris, Institut Pasteur, from Tuesday the 30th of May to Friday June the 2nd. In-person only. Training school focused on Bioimage Analysis. Two parallel tracks: Early career investigators track: Learn to master the tools […]

2023-05-30 10:00:00 2023-06-02 00:00:00 Europe/Paris NEUBIAS Pasteur course on Bioimage Analysis Paris, Institut Pasteur, from Tuesday the 30th of May to Friday June the 2nd. In-person only. Training school focused on Bioimage Analysis. Two parallel tracks: Early career investigators track: Learn to master the tools […] 28 Rue du Docteur Roux, Paris, France

Bioinformatics program for PhD students 2022-2023

This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […]

2022-10-21 09:30:00 2023-06-30 18:00:00 Europe/Paris Bioinformatics program for PhD students 2022-2023 This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […] 25-28 Rue du Docteur Roux, Paris, France

Microscopy – Principles and Applications of Fluorescence Microscopy

Fluorescence microscopy has revolutionized researchers’ ability to monitor cellular structures and dynamics. Over the last decades, the spectrum of applications of fluorescence microscopy has been constantly broadened by novel combinations of optics principles supported […]

2023-03-06 08:00:00 2023-03-17 19:00:00 Europe/Paris Microscopy – Principles and Applications of Fluorescence Microscopy Fluorescence microscopy has revolutionized researchers’ ability to monitor cellular structures and dynamics. Over the last decades, the spectrum of applications of fluorescence microscopy has been constantly broadened by novel combinations of optics principles supported […] 25-28 Rue du Dr Roux, 75015 Paris, France

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Steering committee

The steering committee of the IAH includes three members, two from the Institut Pasteur, one external:

  • Perrine Paul-Gilloteaux. Scientific director of the MicroPICell facility, University of Nantes.
  • Romain Levayer. Head of the ‘Cell Death and Epithelial Homeostasis’ unit, Institut Pasteur, Paris.
  • Philippe Bastin. Head of the ‘Trypanosome Cell Biology’ unit, Institut Pasteur, Paris.

How to access the facility?

IAH open-desks.

First and foremost, come to our open-desks! Open-desk sessions aim at addressing the questions of the campus about image analysis. During 3 hours, once every 2 weeks, the IAH and a number of people from different labs and structures will be present to deal with your images, or general questions about image analysis. We also use them as the main entry point to the facility. Whether you want to start a project, request a training or just discuss an experiment, come to our open-desks Their planning and goals can be found on the IAH open-desk page: https://research.pasteur.fr/en/news/image-analysis-opendesk/

Emails and PPMS.

You can

  • make a project request;
  • make a training request

on our PPMS instance. Our activities are billed. Contact us for more information. We can be reached at iah at pasteur dot fr. If you are unhappy with our services or want to bring a point to our attention privately, you can do so iah.feedback at pasteur dot fr. Only the facility head and the administrative assistant receive these emails and they are treated confidentially.

Team chat.

If you like instant messaging, we have a public channel on the RocketChat instance of Pasteur. We use it to:

  • announce new tools we deploy;
  • or trainings we organize;
  • post interesting conference and external training announcements;
  • post papers we find interesting and comment them;
  • answer directly quick questions you post there.

Join the IAH channel on RocketChat: https://rocketchat.pasteur.cloud/channel/iah

Access policy.

We are part of the C2RT (Center for Technological Resources and Research), a center gathering the Technology and Service units (UTechS) and the technological core facilities of the campus. As such we follow the common guidelines and good practices. On top of this guidelines, our services require users to comply to the following policy:

1. Acknowledgements.

Users will acknowledge the IAH facility and its fundings in any publication or communication, when its services (open-desks, advices, trainings, use of workstations, projects, …) have been used for the presented work. Please also let us know when you do so. Example acknowledgement sentence: “We acknowledge the help of Image Analysis Hub of the Institut Pasteur for this work.

2. Facility usage fees.

Users agree to pay the service fees related to the facility activities. Activities are billed based on hourly rate for academic users. Contact us for pricing.

3. Responsibility.

Users remain responsible for the storage and the integrity of the original image data they provide, and for the analysis results the IAH provides to them once they are delivered.

Feature publications

Images & Médias

Measuring the polarization of T cells. Image M. Mastrogiovanni (Lymphocyte Cell Biology Unit, Institut Pasteur), J.-Y. Tinevez (IAH)
Identification and segmentation of stem cells in the drosophila post-embryonic brain. Image P. Speder (Brain Plasticity in Response to the Environment unit, Institut Pasteur), S. Rigaud (IAH).
Cell migration assay. Image G. Jacquemet (Cell Migration lab, Åbi Akademi University), J.-Y. Tinevez (IAH).
Colony counting on non-microscopy images. N. Gupta (Membrane Traffic and Cell Division unit), J.-Y. Tinevez (IAH).
Modeling a bacteria crossing a mitocondrium in electron microscopy images. Image Z. Uzum (Evolutionary Biology if the Microbial Cell, Institut Pasteur), D. Ershov (IAH).
Measuring the association of degradosome spots in Helicobacter pylori. Tejada-Arranz et al., 2020.
Automated doublet length measurement in super-resolution images. C. Leduc (Cell Polarity, Migration and Cancer unit), J.-Y. Tinevez (IAH)

Contact

Phone: 8218 Email: iah at pasteur dot fr Address: 25-28 Rue du Docteur Roux 75015, Paris France