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Connexions
Présentation
Équipements
Booking siteLogiciel
Membres
![](https://research.pasteur.fr/wp-content/uploads/2015/02/JYT-150x150.jpg)
Jean-Yves Tinevez
Ingénieur(e) de Recherche
Responsable
Anciens Membres
2000
2000
Name
Position
2018
2019
Emma Spanjaard
Research Engineer
2017
2020
Sébastien Herbert
Research Engineer
2018
2021
Dmitry Ershov
Research Engineer
2019
2021
Marion Louveaux
Research Engineer
2020
2020
Benjamin Dorra
Intern
2023
2023
Chérif Latrèche
Intern
Cours
Bioinformatics program for PhD students 2024 2025
This training program in statistics, bioinformatics and image analysis, financed by INCEPTION program, begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, […]
2024-10-01 09:00:00
2025-06-30 17:00:00
Europe/Paris
Bioinformatics program for PhD students 2024 2025
This training program in statistics, bioinformatics and image analysis, financed by INCEPTION program, begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, […]
Bioinformatics program for PhD students 2023 2024
This training program in statistics, bioinformatics and image analysis, financed by INCEPTION program, begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, […]
2023-10-23 09:30:00
2024-06-28 17:00:00
Europe/Paris
Bioinformatics program for PhD students 2023 2024
This training program in statistics, bioinformatics and image analysis, financed by INCEPTION program, begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, […]
25-28 Rue du Docteur Roux, Paris, France
NEUBIAS Pasteur course on Bioimage Analysis
Paris, Institut Pasteur, from Tuesday the 30th of May to Friday June the 2nd. In-person only. Training school focused on Bioimage Analysis. Two parallel tracks: Early career investigators track: Learn to master the tools […]
2023-05-30 10:00:00
2023-06-02 00:00:00
Europe/Paris
NEUBIAS Pasteur course on Bioimage Analysis
Paris, Institut Pasteur, from Tuesday the 30th of May to Friday June the 2nd. In-person only. Training school focused on Bioimage Analysis. Two parallel tracks: Early career investigators track: Learn to master the tools […]
28 Rue du Docteur Roux, Paris, France
Bioinformatics program for PhD students 2022-2023
This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […]
2022-10-21 09:30:00
2023-06-30 18:00:00
Europe/Paris
Bioinformatics program for PhD students 2022-2023
This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […]
25-28 Rue du Docteur Roux, Paris, France
Bioinformatics program for PhD students 2021-2022
This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […]
2021-10-21 09:30:00
2022-06-02 17:00:00
Europe/Paris
Bioinformatics program for PhD students 2021-2022
This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […]
28 Rue du Docteur Roux, Paris, France
Bioinformatics program for PhD students 2020-2021
This mandatory training program, required for all Institut Pasteur PhD students, begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then can […]
2020-10-15 09:30:00
2021-06-03 17:00:00
Europe/Paris
Bioinformatics program for PhD students 2020-2021
This mandatory training program, required for all Institut Pasteur PhD students, begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then can […]
25-28 Rue du Dr Roux, 75015 Paris, France
Microscopy – Principles and Applications of Fluorescence Microscopy
Fluorescence microscopy has revolutionized researchers’ ability to monitor cellular structures and dynamics. Over the last decades, the spectrum of applications of fluorescence microscopy has been constantly broadened by novel combinations of optics principles supported […]
2023-03-06 08:00:00
2023-03-17 19:00:00
Europe/Paris
Microscopy – Principles and Applications of Fluorescence Microscopy
Fluorescence microscopy has revolutionized researchers’ ability to monitor cellular structures and dynamics. Over the last decades, the spectrum of applications of fluorescence microscopy has been constantly broadened by novel combinations of optics principles supported […]
25-28 Rue du Dr Roux, 75015 Paris, France
Projet Transversal
Financements
Partenaires
Publications
Télécharger-
2024Dynamic microfluidic single-cell screening identifies pheno-tuning compounds to potentiate tuberculosis therapy, Nature Communications, 2024, 15 (1), pp.4175. ⟨10.1038/s41467-024-48269-2⟩.
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2024Staying on track – Keeping things running in a high-end scientific imaging core facility., J Microsc 2024 Jun; 294(3): 276-294.
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2024Caveolin-1 protects endothelial cells from extensive expansion of transcellular tunnel by stiffening the plasma membrane., Elife 2024 Mar; 12(): .
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2024Extraocular muscle stem cells exhibit distinct cellular properties associated with non-muscle molecular signatures., Development 2024 Feb; 151(4): .
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2024JDLL: a library to run deep learning models on Java bioimage informatics platforms., Nat Methods 2024 Jan; 21(1): 7-8.
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2023SCRIB controls apical contractility during epithelial differentiation., J Cell Biol 2023 Dec; 222(12): .
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2023MiniBAR/GARRE1 is a dual Rac and Rab effector required for ciliogenesis, Developmental Cell, 2023, 58, pp.1-18. ⟨10.1016/j.devcel.2023.09.010⟩.
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2023Apical size and deltaA expression predict adult neural stem cell decisions along lineage progression, Science Advances , 2023, 9 (35), pp.eadg7519. ⟨10.1126/sciadv.adg7519⟩.
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2023Three-dimensional images reveal the impact of the endosymbiont Midichloria mitochondrii on the host mitochondria., Nat Commun 2023 Jul; 14(1): 4133.
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2023JDLL: A library to run Deep Learning models on Java bioimage informatics platforms, Electrical Engineering and Systems Science > Image and Video Processing.
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+Voir la liste complète de publications
Events
Networks
Steering committee
The steering committee of the IAH includes three members, two from the Institut Pasteur, one external:
- Perrine Paul-Gilloteaux. Scientific director of the MicroPICell facility, University of Nantes.
- Romain Levayer. Head of the ‘Cell Death and Epithelial Homeostasis’ unit, Institut Pasteur, Paris.
- Philippe Bastin. Head of the ‘Trypanosome Cell Biology’ unit, Institut Pasteur, Paris.
How to access the facility?
IAH open-desks.
First and foremost, come to our open-desks! Open-desk sessions aim at addressing the questions of the campus about image analysis. During 3 hours, once every 2 weeks, the IAH and a number of people from different labs and structures will be present to deal with your images, or general questions about image analysis. We also use them as the main entry point to the facility. Whether you want to start a project, request a training or just discuss an experiment, come to our open-desks Their planning and goals can be found on the IAH open-desk page: https://research.pasteur.fr/en/news/image-analysis-opendesk/
Emails and PPMS.
You can
- make a project request;
- make a training request
on our PPMS instance. Our activities are billed. Contact us for more information. We can be reached at iah at pasteur dot fr. If you are unhappy with our services or want to bring a point to our attention privately, you can do so iah.feedback at pasteur dot fr. Only the facility head and the administrative assistant receive these emails and they are treated confidentially.
Team chat.
If you like instant messaging, we have a public channel on the RocketChat instance of Pasteur. We use it to:
- announce new tools we deploy;
- or trainings we organize;
- post interesting conference and external training announcements;
- post papers we find interesting and comment them;
- answer directly quick questions you post there.
Join the IAH channel on RocketChat: https://rocketchat.pasteur.cloud/channel/iah
Access policy.
We are part of the C2RT (Center for Technological Resources and Research), a center gathering the Technology and Service units (UTechS) and the technological core facilities of the campus. As such we follow the common guidelines and good practices. On top of this guidelines, our services require users to comply to the following policy:
1. Acknowledgements.
Users will acknowledge the IAH facility and its fundings in any publication or communication, when its services (open-desks, advices, trainings, use of workstations, projects, …) have been used for the presented work. Please also let us know when you do so. Example acknowledgement sentence: “We acknowledge the help of Image Analysis Hub of the Institut Pasteur for this work.”
2. Facility usage fees.
Users agree to pay the service fees related to the facility activities. Activities are billed based on hourly rate for academic users. Contact us for pricing.
3. Responsibility.
Users remain responsible for the storage and the integrity of the original image data they provide, and for the analysis results the IAH provides to them once they are delivered.
Feature publications
Images & Médias
![](https://research.pasteur.fr/wp-content/uploads/2017/11/research_pasteur-enimage-analysis-hubfrhub-danalyse-dimages-tcellspolarization-01-mmastrogiovanni-1024x762.png)
![](https://research.pasteur.fr/wp-content/uploads/2017/11/research_pasteur-enimage-analysis-hubfrhub-danalyse-dimages-sccellssegmentation-01-pspeder-1024x392.jpg)
![](https://research.pasteur.fr/wp-content/uploads/2017/11/research_pasteur-enimage-analysis-hubfrhub-danalyse-dimages-nucleitracking-02-e1602573726777.jpg)
![](https://research.pasteur.fr/wp-content/uploads/2017/11/research_pasteur-enimage-analysis-hubfrhub-danalyse-dimages-colonyassay-ngupta-1024x632.jpg)
![](https://research.pasteur.fr/wp-content/uploads/2017/11/research_pasteur-enimage-analysis-hubfrhub-danalyse-dimages-bacteriumthroughmitochondrion-01-fstavru-1024x305.jpg)
![](https://research.pasteur.fr/wp-content/uploads/2017/11/research_pasteur-enimage-analysis-hubfrhub-danalyse-dimages-degradosomedistance-02-atejada-1024x548.jpg)
![](https://research.pasteur.fr/wp-content/uploads/2020/04/research_pasteur-screenshot-2020-04-22-at-23.24.12.png)
Contact
Phone: 8218 Email: iah at pasteur dot fr Address: 25-28 Rue du Docteur Roux 75015, Paris France