Timeline
Jean-Christophe Olivo-Marin
Head of Structure
18 Apr 2024
publication
Sparse Non-Negative Matrix Factorization for Preclinical Bioluminescent Imaging
Read more01 Mar 2024
publication
Automatic monitoring of neural activity with single-cell resolution in behaving Hydra
Read more15 Jan 2024
publication
Bridging the Gap: Integrating Cutting-edge Techniques into Biological Imaging with deepImageJ
Read more01 Jan 2024
publication
JDLL: a library to run deep learning models on Java bioimage informatics platforms.
Read more21 Oct 2023
publication
Encystation and Stress Responses under the Control of Ubiquitin-like Proteins in Pathogenic Amoebae
Read more01 Sep 2023
29 Jun 2023
publication
Intermediate filaments promote glioblastoma cell invasion by controlling cell deformability and mechanosensitive gene expression
Read more07 Jun 2023
publication
JDLL: A library to run Deep Learning models on Java bioimage informatics platforms
Read more01 Jun 2023
publication
Automatic diagnosis and classification of breast surgical samples with dynamic full-field OCT and machine learning
Read more13 May 2023
publication
Live Cells Imaging and Comparative Phosphoproteomics Uncover Proteins from the Mechanobiome in Entamoeba histolytica.
Read more07 Feb 2023
23 Jan 2023
publication
From Nano to Macro: Overview of the IEEE Bio Image and Signal Processing Technical Committee
Read more31 Oct 2022
publication
From Nano to Macro: Overview of the IEEE Bio Image and Signal Processing Technical Committee
Read more21 Oct 2022
publication
4D live imaging and computational modeling of a functional gut-on-a-chip evaluate how peristalsis facilitates enteric pathogen invasion.
Read more18 Oct 2022
publication
Smart Learning of Click and Refine for Nuclei Segmentation on Histology Images
Read more16 Oct 2022
02 Sep 2022
publication
Domain Adapted Multi-task Learning For Segmenting Amoeboid Cells in Microscopy
Read more01 Sep 2022
publication
Factorisation Non-Négative de Matrice pour séparation de sources en Imagerie par Bioluminescence préclinique
Read more22 Jul 2022
publication
Tracking receptor motions at the plasma membrane reveals distinct effects of ligands on CCR5 dynamics depending on its dimerization status.
Read more25 May 2022
30 Apr 2022
publication
Reformulating Optical Flow to Solve Image-Based Inverse Problems and Quantify Uncertainty
Read more26 Apr 2022
26 Apr 2022
26 Apr 2022
22 Apr 2022
31 Mar 2022
08 Dec 2021
07 Oct 2021
27 Sep 2021
publication
Interrogating RNA and protein spatial subcellular distribution in smFISH data with DypFISH
Read more14 Sep 2021
23 Aug 2021
10 Jun 2021
25 May 2021
publication
A Robust and Versatile Framework to Compare Spike Detection Methods in Calcium Imaging of Neuronal Activity
Read more25 May 2021
publication
Leveraging Global Diagnosis For Tumor Localization In Dynamic Cell Imaging Of Breast Cancer Tissue Towards Fast Biopsying
Read more25 May 2021
publication
Blind Source Separation In Dynamic Cell Imaging Using Non-Negative Matrix Factorization Applied To Breast Cancer Biopsies
Read more05 May 2021
publication
Extended Depth of Field Preserving Color Fidelity For Automated Digital Cytology
Read more13 Apr 2021
publication
Morphological Reconstruction of Detached Dendritic Spines via Geodesic Path Prediction
Read more13 Apr 2021
publication
A Min-Max Based Hyperparameter Estimation For Domain-Adapted Segmentation Of Amoeboid Cells
Read more13 Apr 2021
publication
Nu3D: 3D Nuclei Segmentation from Light-Sheet Microscopy Images of the Embryonic Heart
Read more12 Feb 2021
publication
Missing Self-Induced Activation of NK Cells Combines with Non-Complement-Fixing Donor-Specific Antibodies to Accelerate Kidney Transplant Loss in Chronic Antibody-Mediated Rejection
Read more20 Jan 2021
publication
Performing point-of-care molecular testing for SARS-CoV-2 with RNA extraction and isothermal amplification
Read more12 Jan 2021
08 Jan 2021
project
Next generation of Structured Illumination Microscopy (SIM) for biological imaging
Read more08 Jan 2021
project
Machine learning methods to predict cancerous areas from Full Field Optical Coherence Tomography (FFOCT) and Dynamical FFOCT images
Read more08 Jan 2021
06 Jan 2021
05 Jan 2021
23 Nov 2020
publication
Cell Tracking Profiler – a user-driven analysis framework for evaluating 4D live-cell imaging data
Read more16 Nov 2020
publication
Evaluating the Stability of Spatial Keypoints via Cluster Core Correspondence Index
Read more12 Nov 2020
30 Oct 2020
26 Oct 2020
publication
E-cadherin focuses protrusion formation at the front of migrating cells by impeding actin flow
Read more21 Oct 2020
01 Sep 2020
publication
Transcriptional Changes in Kidney Allografts with Histology of Antibody-Mediated Rejection without Anti-HLA Donor-Specific Antibodies.
Read more05 Aug 2020
04 Aug 2020
publication
Highly performing point-of-care molecular testing for SARS-CoV-2 with RNA extraction and isothermal amplification.
Read more01 Aug 2020
22 Jul 2020
publication
Generalizing the Statistical Analysis of Objects’ Spatial Coupling in Bioimaging
Read more04 Jun 2020
publication
A Protocol to Quantify Cellular Morphodynamics: From Cell Labelling to Automatic Image Analysis
Read more02 Jun 2020
publication
Human Immune Response Triggered by Entamoeba histolytica in a 3D-Intestinal Model
Read more19 May 2020
publication
Learning to segment clustered amoeboid cells from brightfield microscopy via multi-task learning with adaptive weight selection
Read more01 Nov 2019
publication
Real-time analysis of the behaviour of groups of mice via a depth-sensing camera and machine learning.
Read more01 Oct 2019
23 Jul 2019
03 Jul 2019
publication
Icytomine: A User-Friendly Tool for Integrating Workflows on Whole Slide Images
Read more01 Jul 2019
publication
Tracking and line integration of diffuse cellular subdomains by mesh advection
Read more19 Feb 2019
21 Jan 2019
publication
Compressed sensing-enabled phase-sensitive swept-source optical coherence tomography
Read more08 Sep 2018
publication
Stress-induced brain activation: buffering role of social behavior and neuronal nicotinic receptors
Read more22 Aug 2018
publication
Anisotropic organization of circumferential actomyosin characterizes hematopoietic stem cells emergence in the zebrafish.
Read more01 Aug 2018
publication
Denoising of Microscopy Images: A Review of the State-of-the-Art, and a New Sparsity-Based Method
Read more03 Jul 2018
25 May 2018
24 May 2018
publication
Basal cell carcinoma detection in full field OCT images using convolutional neural networks
Read more15 Feb 2018
publication
Mapping molecular assemblies with fluorescence microscopy and object-based spatial statistics
Read more06 Feb 2018
publication
Quantitative and Statistical Study of the Dynamics of Clathrin-Dependent and -Independent Endocytosis Reveal a Differential Role of EndophilinA2
Read more15 Jan 2018
publication
Activation of human gonadotropin-releasing hormone receptor promotes down regulation of ARHGAP18 and regulates the cell invasion of MDA-MB-231 cells
Read more10 Jan 2018
project
DIM ELICIT – Domain of Main Interest “Empowering LIfe sCiences with Innovative Technologies”
Read more07 Dec 2017
publication
Crosstalk between Entamoeba histolytica and the human intestinal tract during amoebiasis
Read more07 Dec 2017
publication
Crosstalk between Entamoeba histolytica and the human intestinal tract during amoebiasis
Read more01 Dec 2017
31 Aug 2017
publication
Legionella pneumophila Modulates Mitochondrial Dynamics to Trigger Metabolic Repurposing of Infected Macrophages
Read more24 Aug 2017
publication
A sparsity-based simplification method for segmentation of spectral-domain optical coherence tomography images
Read more23 Aug 2017
publication
BioFlow: a non-invasive, image-based method to measure speed, pressure and forces inside living cells.
Read more11 Jul 2017
publication
Activation of human gonadotropin-releasing hormone receptor promotes down regulation of ARHGAP18 and regulates the cell invasion of MDA-MB-231 cells
Read more19 May 2017
19 Apr 2017
publication
Reducing data acquisition for fast structured illumination microscopy using compressed sensing
Read more21 Mar 2017
18 Mar 2017
publication
Computer-assisted topological analysis of renal allograft inflammation adds to risk evaluation at diagnosis of humoral rejection
Read more27 Feb 2017
publication
Amotl1 mediates sequestration of the Hippo effector Yap1 downstream of Fat4 to restrict heart growth.
Read more07 Dec 2016
01 Dec 2016
publication
The motility of Entamoeba histolytica: finding ways to understand intestinal amoebiasis.
Read more22 Aug 2016
publication
Tunneling nanotubes spread fibrillar α-synuclein by intercellular trafficking of lysosomes
Read more04 Aug 2016
publication
The motility of Entamoeba histolytica: finding ways to understand intestinal amoebiasis
Read more05 Jun 2016
23 May 2016
10 May 2016
16 Apr 2016
publication
Biophysical measurements in 2D and 3D live cell imaging using fluid dynamics and optical flow
Read more14 Apr 2016
publication
Sparsity-based simplification of spectral-domain optical coherence tomography images of cardiac samples
Read more26 Feb 2016
publication
Intracellular traffic of the lysine and glutamic acid rich protein KERP1 reveals features of endomembrane organization in Entamoeba histolytica
Read more10 Feb 2016
publication
Human Liver Infection in a Dish: Easy-To-Build 3D Liver Models for Studying Microbial Infection
Read more28 Jan 2016
news
A new publication on the link between anxiety, depression, olfactory deficits and adult neurogenesis
Read more17 Dec 2015
27 Oct 2015
13 Oct 2015
11 Sep 2015
01 Sep 2015
publication
Absence of Fungal Spore Internalization by Bronchial Epithelium in Mouse Models Evidenced by a New Bioimaging Approach and Transmission Electronic Microscopy.
Read more11 Jul 2015
29 Jun 2015
publication
Membrane protrusion powers clathrin-independent endocytosis of interleukin-2 receptor
Read more15 Jun 2015
07 Jun 2015
06 Jun 2015
06 Jun 2015
18 Apr 2015
25 Mar 2015
10 Mar 2015
07 Mar 2015
01 Feb 2015
20 Jan 2015
13 Jan 2015
06 Jan 2015
publication
Acute stress in adulthood impoverishes social choices and triggers aggressiveness in preclinical models
Read more02 Dec 2014
22 Oct 2014
01 Jun 2014
publication
Early sequence of events triggered by the interaction of Neisseria meningitidis with endothelial cells.
Read more01 Mar 2014
01 Mar 2014
publication
An unbiased risk estimator for image denoising in the presence of mixed poisson-gaussian noise
Read more08 Jan 2014
publication
Urinary retinol binding protein is a marker of the extent of interstitial kidney fibrosis
Read more04 Dec 2013
01 Nov 2013
24 Oct 2013
03 Sep 2013
publication
AutomiG, a biosensor to detect alterations in miRNA biogenesis and in small RNA silencing guided by perfect target complementarity
Read more23 Jul 2013
publication
Nonaggressive and adapted social cognition is controlled by the interplay between noradrenergic and nicotinic receptor mechanisms in the prefrontal cortex
Read more17 May 2013
23 Jan 2013
publication
The signalling factor PI3K is a specific regulator of the clathrin-independent dynamin-dependent endocytosis of IL-2 receptors
Read more21 Jan 2013
publication
Extracting 3D cell parameters from dense tissue environments: application to the development of the mouse heart
Read more15 Jan 2013
publication
Quantitative analysis of polarity in 3D reveals local cell coordination in the embryonic mouse heart
Read more19 Sep 2012
13 Sep 2012
publication
Shigella effector IpaB-induced cholesterol relocation disrupts the Golgi complex and recycling network to inhibit host cell secretion
Read more28 Jun 2012
01 May 2012
publication
Modulation of the mouse prefrontal cortex activation by neuronal nicotinic receptors during novelty exploration but not by exploration of a familiar environment.
Read more23 Apr 2012
publication
Characterizing the 3-D field distortions in low numerical aperture fluorescence zooming microscope
Read more17 Apr 2012
publication
Trisomy for synaptojanin1 in Down syndrome is functionally linked to the enlargement of early endosomes
Read more05 Mar 2012
publication
Kidney graft outcome and quality (after transplantation) from uncontrolled deceased donors after cardiac arrest
Read more04 Mar 2012
15 Feb 2012
publication
Newly visualized fibrillar collagen scaffolds dictate Entamoeba histolytica invasion route in the human colon
Read more27 Oct 2011
publication
New computerized color image analysis for the quantification of interstitial fibrosis in renal transplantation
Read more11 Sep 2011
publication
Numerical evaluation of sampling bounds for near-optimal reconstruction in compressed sensing
Read more22 Jul 2011
12 Jul 2011
01 Jul 2011
21 Jun 2011
publication
Specific targeting of the GABA-A receptor α5 subtype by a selective inverse agonist restores cognitive deficits in Down syndrome mice
Read more14 Jun 2011
publication
Interstitial fibrosis evolution on early sequential screening renal allograft biopsies using quantitative image analysis
Read more04 Apr 2011
publication
The adaptor-associated kinase 1, AAK1, is a positive regulator of the Notch pathway
Read more01 Jan 2011
01 Jan 2011
publication
Spherical Harmonics based extraction and annotation of cell shape in 3D time-lapse microscopy sequences
Read more30 Dec 2010
publication
3-D active meshes: fast discrete deformable models for cell tracking in 3-D time-lapse microscopy
Read more01 Dec 2010
publication
Disruption of Adult Neurogenesis in the Olfactory Bulb Affects Social Interaction but not Maternal Behavior
Read more08 Oct 2010
28 Apr 2010
publication
Pak1 phosphorylation enhances cortactin-N-WASP interaction in clathrin-caveolin-independent endocytosis
Read more15 Apr 2010
publication
Escape of HIV-1-infected dendritic cells from TRAIL-mediated NK cell cytotoxicity during NK-DC cross-talk–a pivotal role of HMGB1
Read more01 Mar 2010
publication
A versatile system for the neuronal subtype specific expression of lentiviral vectors.
Read more14 Jan 2010
publication
Urinary procollagen III aminoterminal propeptide (PIIINP): a fibrotest for the nephrologist
Read more01 Jan 2010
publication
Combining local filtering and multiscale analysis for edge, ridge, and curvilinear objects detection
Read more01 Jan 2010
07 Nov 2009
publication
Compressed Sensing in microscopy with random projections in the Fourier domain
Read more01 Nov 2009
publication
[Recent approaches of quantification of interstitial fibrosis in renal transplantation]
Read more01 Nov 2009
publication
Interstitial fibrosis quantification in renal transplant recipients randomized to continue cyclosporine or convert to sirolimus
Read more15 Sep 2009
publication
Cellular and behavioral effects of cranial irradiation of the subventricular zone in adult mice
Read more04 Sep 2009
01 Aug 2009
14 Jul 2009
publication
In vivo colocalisation of oskar mRNA and trans-acting proteins revealed by quantitative imaging of the Drosophila oocyte
Read more01 Jul 2009
01 Jun 2009
01 Apr 2009
publication
WAFL, a new protein involved in regulation of early endocytic transport at the intersection of actin and microtubule dynamics.
Read more08 Feb 2009
01 Jan 2009
12 Nov 2008
publication
A dual role for actin and microtubule cytoskeleton in the transport of Golgi units from the nurse cells to the oocyte across ring canals
Read more02 Nov 2008
01 Nov 2008
17 May 2008
publication
Improving single particle localization with an empirically calibrated Gaussian kernel
Read more27 Dec 2007
publication
Quantification of interstitial fibrosis by image analysis on routine renal biopsy in patients receiving cyclosporine
Read more01 Oct 2007
publication
Quantification of interstitial fibrosis by image analysis on routine renal biopsy 1 year after transplantation in patients managed by C2 monitoring of cyclosporine microemulsion
Read more27 Apr 2007
01 Apr 2007
publication
Gaussian approximations of fluorescence microscope point-spread function models
Read more01 Jan 2007
11 Oct 2006
publication
Olfactory discrimination learning increases the survival of adult-born neurons in the olfactory bulb
Read more01 Oct 2006
publication
Quantitative four-dimensional tracking of cytoplasmic and nuclear HIV-1 complexes
Read more24 Jul 2006
publication
Cerebral microcirculation shear stress levels determine Neisseria meningitidis attachment sites along the blood-brain barrier
Read more01 Jun 2006
publication
SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope
Read more01 May 2006
publication
Multiple particle tracking in 3-D+t microscopy: method and application to the tracking of endocytosed quantum dots
Read more01 Apr 2006
publication
Richardson-Lucy algorithm with total variation regularization for 3D confocal microscope deconvolution
Read more01 Feb 2006
publication
Human tumor necrosis factor is a chemoattractant for the parasite Entamoeba histolytica
Read more16 Jan 2006
publication
Telomere tethering at the nuclear periphery is essential for efficient DNA double strand break repair in subtelomeric region
Read more01 Nov 2005
01 Sep 2005
publication
Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces
Read more20 Jul 2005
publication
Neonatal and adult neurogenesis provide two distinct populations of newborn neurons to the mouse olfactory bulb
Read more14 Jul 2005
publication
Human MxA protein participates to the interferon-related inhibition of hepatitis B virus replication in female transgenic mice
Read more01 Jan 2005
publication
Myosin II and the Gal-GalNAc lectin play a crucial role in tissue invasion by Entamoeba histolytica
Read more19 Jul 2004
publication
Cortactin and Crk cooperate to trigger actin polymerization during Shigella invasion of epithelial cells
Read more01 Jul 2004
publication
Imaging movement of malaria parasites during transmission by Anopheles mosquitoes
Read more01 Jun 2003
publication
Anti-inflammatory role for intracellular dimeric immunoglobulin a by neutralization of lipopolysaccharide in epithelial cells
Read more15 Jan 2003
publication
The metabotropic glutamate receptor mGluR5 is endocytosed by a clathrin-independent pathway
Read more01 Jan 2003
publication
EhPAK, a member of the p21-activated kinase family, is involved in the control of Entamoeba histolytica migration and phagocytosis
Read more01 Nov 2002
publication
Membrane-cytoskeleton interactions during the formation of the immunological synapse and subsequent T-cell activation
Read more01 Oct 2002
publication
Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours: a tool for cell-based drug testing
Read more01 Mar 2002
publication
Nuclear architecture and spatial positioning help establish transcriptional states of telomeres in yeast
Read more15 Feb 2002
publication
A central role for Plasmodium falciparum subtelomeric regions in spatial positioning and telomere length regulation
Read more01 Jun 2001
01 Jan 2000
01 Apr 1999
publication
Myosin IB from Entamoeba histolytica is involved in phagocytosis of human erythrocytes
Read more14 Jan 1999
publication
Receptor-mediated substrate translocation through the nuclear pore complex without nucleotide triphosphate hydrolysis
Read more01 Jan 1999
publication
Dual-color visualization of trans-Golgi network to plasma membrane traffic along microtubules in living cells
Read more16 Nov 1998
publication
Interferon alpha inhibits a Src-mediated pathway necessary for Shigella-induced cytoskeletal rearrangements in epithelial cells
Read more01 Jun 1998
publication
Virulence and functions of myosin II are inhibited by overexpression of light meromyosin in Entamoeba histolytica
Read more01 Feb 1998
01 Jan 1998
publication
Localization of three human polypeptide GalNAc-transferases in HeLa cells suggests initiation of O-linked glycosylation throughout the Golgi apparatus
Read more01 Dec 1997
publication
Cellular expression and proteolytic processing of presenilin proteins is developmentally regulated during neuronal differentiation
Read more01 Dec 1997
publication
Dendroaxonal transcytosis of transferrin in cultured hippocampal and sympathetic neurons
Read more01 Apr 1997
publication
Molecular requirements for bi-directional movement of phagosomes along microtubules
Read more01 Oct 1993
01 Feb 1992
publication
Regional expression of the homeobox gene Nkx-2.2 in the developing mammalian forebrain
Read more01 Dec 1991
publication
[Functional microscopic imaging of the thyroid gland with the help of analytical ion microscopy]
Read more01 Dec 1991
01 Dec 1990
publication
Digital correlation of ion and optical microscopic images: application to the study of thyroglobulin chemical modification
Read more01 Oct 1989
01 Jan 1986
publication