Timeline

Jean-Christophe Olivo-Marin
Head of Structure
07 Oct 2021
event

DIM ELICIT SYMPOSIUM – Empowering life sciences with innovative technologies

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14 Sep 2021
publication

Cytokine receptor cluster size impacts its endocytosis and signaling.

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23 Aug 2021
event

BioImage Informatics 2021 virtual conference

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12 Feb 2021
publication

Missing Self-Induced Activation of NK Cells Combines with Non-Complement-Fixing Donor-Specific Antibodies to Accelerate Kidney Transplant Loss in Chronic Antibody-Mediated Rejection

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01 Feb 2021
publication

Missing Self-Induced Activation of NK Cells Combines with Non-Complement-Fixing Donor-Specific Antibodies to Accelerate Kidney Transplant Loss in Chronic Antibody-Mediated Rejection.

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20 Jan 2021
publication

Performing point-of-care molecular testing for SARS-CoV-2 with RNA extraction and isothermal amplification

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12 Jan 2021
event

QBI 2019 Quantitative BioImaging Conference

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08 Jan 2021
project

Next generation of Structured Illumination Microscopy (SIM) for biological imaging

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08 Jan 2021
project

Machine learning methods to predict cancerous areas from Full Field Optical Coherence Tomography (FFOCT) and Dynamical FFOCT images

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08 Jan 2021
publication

Bioimage Analysis and Cell Motility

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06 Jan 2021
publication

Aspergillus fumigatus, One Uninucleate Species with Disparate Offspring.

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05 Jan 2021
event

2019 ASCB – EMBO Meeting – Cell Biology for the 21st Century

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23 Nov 2020
publication

Cell Tracking Profiler – a user-driven analysis framework for evaluating 4D live-cell imaging data

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16 Nov 2020
publication

Evaluating the Stability of Spatial Keypoints via Cluster Core Correspondence Index

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12 Nov 2020
project

Statistical analysis of spatial coupling in bioimaging with SODA

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30 Oct 2020
publication

Modeling Shape Dynamics During Cell Motility in Microscopy Videos

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26 Oct 2020
publication

E-cadherin focuses protrusion formation at the front of migrating cells by impeding actin flow

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21 Oct 2020
publication

Human intestinal models to study interactions between intestine and microbes

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01 Sep 2020
publication

Transcriptional Changes in Kidney Allografts with Histology of Antibody-Mediated Rejection without Anti-HLA Donor-Specific Antibodies.

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05 Aug 2020
event

BioImage Informatics 2020

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04 Aug 2020
publication

Highly performing point-of-care molecular testing for SARS-CoV-2 with RNA extraction and isothermal amplification.

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01 Aug 2020
publication

Insights into amebiasis using a human 3D-intestinal model.

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22 Jul 2020
publication

Generalizing the Statistical Analysis of Objects’ Spatial Coupling in Bioimaging

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04 Jun 2020
publication

A Protocol to Quantify Cellular Morphodynamics: From Cell Labelling to Automatic Image Analysis

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02 Jun 2020
publication

Human Immune Response Triggered by Entamoeba histolytica in a 3D-Intestinal Model

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25 Nov 2019
publication

Missing self triggers NK cell-mediated chronic vascular rejection of solid organ transplants

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25 Nov 2019
publication

Missing self triggers NK cell-mediated chronic vascular rejection of solid organ transplants.

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01 Nov 2019
publication

Real-time analysis of the behaviour of groups of mice via a depth-sensing camera and machine learning.

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01 Oct 2019
publication

Treatment of Breast Cancer With Gonadotropin-Releasing Hormone Analogs

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23 Jul 2019
project

Endothelium disruption by toxin-induced transcellular tunnels

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01 Jul 2019
publication

Tracking and line integration of diffuse cellular subdomains by mesh advection

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19 Feb 2019
publication

Fluid dynamics during bleb formation in migrating cells in vivo

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21 Jan 2019
publication

Compressed sensing-enabled phase-sensitive swept-source optical coherence tomography

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08 Sep 2018
publication

Stress-induced brain activation: buffering role of social behavior and neuronal nicotinic receptors

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22 Aug 2018
publication

Anisotropic organization of circumferential actomyosin characterizes hematopoietic stem cells emergence in the zebrafish.

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01 Aug 2018
publication

Denoising of Microscopy Images: A Review of the State-of-the-Art, and a New Sparsity-Based Method

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03 Jul 2018
publication

Morphodynamics of the Actin-Rich Cytoskeleton in Entamoeba histolytica

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25 May 2018
publication

Multiple variational image assimilation for accessible micro-elastography

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15 Feb 2018
publication

Mapping molecular assemblies with fluorescence microscopy and object-based spatial statistics

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06 Feb 2018
publication

Quantitative and Statistical Study of the Dynamics of Clathrin-Dependent and -Independent Endocytosis Reveal a Differential Role of EndophilinA2

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15 Jan 2018
publication

Activation of human gonadotropin-releasing hormone receptor promotes down regulation of ARHGAP18 and regulates the cell invasion of MDA-MB-231 cells

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10 Jan 2018
project

DIM ELICIT – Domain of Main Interest “Empowering LIfe sCiences with Innovative Technologies”

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07 Dec 2017
publication

Crosstalk between Entamoeba histolytica and the human intestinal tract during amoebiasis

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07 Dec 2017
publication

Crosstalk between Entamoeba histolytica and the human intestinal tract during amoebiasis

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01 Dec 2017
publication

An objective comparison of cell-tracking algorithms.

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31 Aug 2017
publication

Legionella pneumophila Modulates Mitochondrial Dynamics to Trigger Metabolic Repurposing of Infected Macrophages

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24 Aug 2017
publication

A sparsity-based simplification method for segmentation of spectral-domain optical coherence tomography images

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23 Aug 2017
publication

BioFlow: a non-invasive, image-based method to measure speed, pressure and forces inside living cells.

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11 Jul 2017
publication

Activation of human gonadotropin-releasing hormone receptor promotes down regulation of ARHGAP18 and regulates the cell invasion of MDA-MB-231 cells

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19 May 2017
publication

Deciphering tissue morphodynamics using bioimage informatics

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19 Apr 2017
publication

Reducing data acquisition for fast structured illumination microscopy using compressed sensing

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21 Mar 2017
publication

Imaging tissue-mimic with light sheet microscopy: A comparative guideline

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18 Mar 2017
publication

Computer-assisted topological analysis of renal allograft inflammation adds to risk evaluation at diagnosis of humoral rejection

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27 Feb 2017
publication

Amotl1 mediates sequestration of the Hippo effector Yap1 downstream of Fat4 to restrict heart growth.

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07 Dec 2016
publication

Imagining the future of bioimage analysis

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01 Dec 2016
publication

The motility of Entamoeba histolytica: finding ways to understand intestinal amoebiasis.

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22 Aug 2016
publication

Tunneling nanotubes spread fibrillar α-synuclein by intercellular trafficking of lysosomes

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04 Aug 2016
publication

The motility of Entamoeba histolytica: finding ways to understand intestinal amoebiasis

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05 Jun 2016
publication

Recording Mouse Ultrasonic Vocalizations to Evaluate Social Communication

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23 May 2016
publication

A role for septin 2 in Drp1-mediated mitochondrial fission

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10 May 2016
event

Digital Image Processing/Analysis Tools for Quantitative Light Microscopy Imaging

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16 Apr 2016
publication

Biophysical measurements in 2D and 3D live cell imaging using fluid dynamics and optical flow

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14 Apr 2016
publication

Sparsity-based simplification of spectral-domain optical coherence tomography images of cardiac samples

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26 Feb 2016
publication

Intracellular traffic of the lysine and glutamic acid rich protein KERP1 reveals features of endomembrane organization in Entamoeba histolytica

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10 Feb 2016
publication

Human Liver Infection in a Dish: Easy-To-Build 3D Liver Models for Studying Microbial Infection

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28 Jan 2016
news

A new publication on the link between anxiety, depression, olfactory deficits and adult neurogenesis

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13 Jan 2016
publication

Anxiety- and Depression-Like States Lead to Pronounced Olfactory Deficits and Impaired Adult Neurogenesis in Mice

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17 Dec 2015
event

The first Citech retreat (Le Grand Hotel du Touquet)

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27 Oct 2015
project

Microfluidics@Pasteur

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13 Oct 2015
publication

Amoeboid movement in protozoan pathogens

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11 Sep 2015
publication

Image denoising by adaptive Compressed Sensing reconstructions and fusions

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01 Sep 2015
publication

Absence of Fungal Spore Internalization by Bronchial Epithelium in Mouse Models Evidenced by a New Bioimaging Approach and Transmission Electronic Microscopy.

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11 Jul 2015
program_project

The institut Carnot Pasteur MS

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29 Jun 2015
publication

Membrane protrusion powers clathrin-independent endocytosis of interleukin-2 receptor

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15 Jun 2015
software

Icy: an open community platform for bioimage informatics

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07 Jun 2015
project

Compressive Sensing in biological imaging

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06 Jun 2015
project

Imaging and mathematical modelling of cell morphology and motility

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06 Jun 2015
project

Multiple spot tracking in 3D+t microscopy

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18 Apr 2015
publication

Image denoising by multiple Compressed Sensing reconstructions

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25 Mar 2015
publication

Social communication in mice–are there optimal cage conditions?

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10 Mar 2015
publication

KDEL Receptors Assist Dengue Virus Exit from the Endoplasmic Reticulum.

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07 Mar 2015
publication

Imaging intraflagellar transport in trypanosomes

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01 Feb 2015
publication

An open data ecosystem for cell migration research.

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20 Jan 2015
publication

Statistical analysis of molecule colocalization in bioimaging

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13 Jan 2015
software

PG-URE estimator

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06 Jan 2015
publication

Acute stress in adulthood impoverishes social choices and triggers aggressiveness in preclinical models

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02 Dec 2014
team

Biological Image Analysis

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22 Oct 2014
publication

Adult neurogenesis restores dopaminergic neuronal loss in the olfactory bulb

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01 Jun 2014
publication

Early sequence of events triggered by the interaction of Neisseria meningitidis with endothelial cells.

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01 Mar 2014
publication

Objective comparison of particle tracking methods.

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01 Mar 2014
publication

An unbiased risk estimator for image denoising in the presence of mixed poisson-gaussian noise

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08 Jan 2014
publication

Urinary retinol binding protein is a marker of the extent of interstitial kidney fibrosis

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04 Dec 2013
publication

Analysis of the spatial organization of molecules with robust statistics

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01 Nov 2013
publication

Multiple hypothesis tracking for cluttered biological image sequences

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24 Oct 2013
publication

αTAT1 catalyses microtubule acetylation at clathrin-coated pits.

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03 Sep 2013
publication

AutomiG, a biosensor to detect alterations in miRNA biogenesis and in small RNA silencing guided by perfect target complementarity

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23 Jul 2013
publication

Nonaggressive and adapted social cognition is controlled by the interplay between noradrenergic and nicotinic receptor mechanisms in the prefrontal cortex

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17 May 2013
publication

Multiple Hypothesis Tracking for Cluttered Biological Image Sequences

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23 Jan 2013
publication

The signalling factor PI3K is a specific regulator of the clathrin-independent dynamin-dependent endocytosis of IL-2 receptors

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21 Jan 2013
publication

Extracting 3D cell parameters from dense tissue environments: application to the development of the mouse heart

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15 Jan 2013
publication

Quantitative analysis of polarity in 3D reveals local cell coordination in the embryonic mouse heart

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19 Sep 2012
publication

Intraflagellar transport proteins cycle between the flagellum and its base

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13 Sep 2012
publication

Shigella effector IpaB-induced cholesterol relocation disrupts the Golgi complex and recycling network to inhibit host cell secretion

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28 Jun 2012
publication

Icy: an open bioimage informatics platform for extended reproducible research

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01 May 2012
publication

Modulation of the mouse prefrontal cortex activation by neuronal nicotinic receptors during novelty exploration but not by exploration of a familiar environment.

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23 Apr 2012
publication

Characterizing the 3-D field distortions in low numerical aperture fluorescence zooming microscope

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17 Apr 2012
publication

Trisomy for synaptojanin1 in Down syndrome is functionally linked to the enlargement of early endosomes

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05 Mar 2012
publication

Kidney graft outcome and quality (after transplantation) from uncontrolled deceased donors after cardiac arrest

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04 Mar 2012
publication

Computerized video analysis of social interactions in mice

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15 Feb 2012
publication

Newly visualized fibrillar collagen scaffolds dictate Entamoeba histolytica invasion route in the human colon

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27 Oct 2011
publication

New computerized color image analysis for the quantification of interstitial fibrosis in renal transplantation

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11 Sep 2011
publication

Numerical evaluation of sampling bounds for near-optimal reconstruction in compressed sensing

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22 Jul 2011
publication

Bayesian estimation for optimized structured illumination microscopy

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12 Jul 2011
publication

Special issue on whole slide microscopic image processing

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01 Jul 2011
publication

Prefrontal nicotinic receptors control novel social interaction between mice.

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21 Jun 2011
publication

Specific targeting of the GABA-A receptor α5 subtype by a selective inverse agonist restores cognitive deficits in Down syndrome mice

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14 Jun 2011
publication

Interstitial fibrosis evolution on early sequential screening renal allograft biopsies using quantitative image analysis

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04 Apr 2011
publication

The adaptor-associated kinase 1, AAK1, is a positive regulator of the Notch pathway

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01 Jan 2011
publication

Off-axis compressed holographic microscopy in low-light conditions.

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01 Jan 2011
publication

Spherical Harmonics based extraction and annotation of cell shape in 3D time-lapse microscopy sequences

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30 Dec 2010
publication

3-D active meshes: fast discrete deformable models for cell tracking in 3-D time-lapse microscopy

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01 Dec 2010
publication

Disruption of Adult Neurogenesis in the Olfactory Bulb Affects Social Interaction but not Maternal Behavior

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08 Oct 2010
publication

Compressed Sensing Applications for Biological Microscopy

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28 Apr 2010
publication

Pak1 phosphorylation enhances cortactin-N-WASP interaction in clathrin-caveolin-independent endocytosis

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15 Apr 2010
publication

Escape of HIV-1-infected dendritic cells from TRAIL-mediated NK cell cytotoxicity during NK-DC cross-talk–a pivotal role of HMGB1

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01 Mar 2010
publication

A versatile system for the neuronal subtype specific expression of lentiviral vectors.

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14 Jan 2010
publication

Urinary procollagen III aminoterminal propeptide (PIIINP): a fibrotest for the nephrologist

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01 Jan 2010
publication

Combining local filtering and multiscale analysis for edge, ridge, and curvilinear objects detection

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01 Jan 2010
publication

Compressed Sensing for Digital Holographic Microscopy

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07 Nov 2009
publication

Compressed Sensing in microscopy with random projections in the Fourier domain

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01 Nov 2009
publication

[Recent approaches of quantification of interstitial fibrosis in renal transplantation]

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01 Nov 2009
publication

Interstitial fibrosis quantification in renal transplant recipients randomized to continue cyclosporine or convert to sirolimus

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15 Sep 2009
publication

Cellular and behavioral effects of cranial irradiation of the subventricular zone in adult mice

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04 Sep 2009
publication

Compressed sensing in biological microscopy

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01 Aug 2009
publication

Blind deconvolution for thin-layered confocal imaging

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14 Jul 2009
publication

In vivo colocalisation of oskar mRNA and trans-acting proteins revealed by quantitative imaging of the Drosophila oocyte

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01 Jul 2009
publication

A compressed sensing approach for biological microscopic image processing

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01 Jun 2009
publication

Tracking algorithms chase down pathogens

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01 Apr 2009
publication

WAFL, a new protein involved in regulation of early endocytic transport at the intersection of actin and microtubule dynamics.

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09 Mar 2009
publication

A Compressed Sensing Approach for Biological Microscopy Image Denoising

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08 Feb 2009
publication

Prions hijack tunnelling nanotubes for intercellular spread

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12 Nov 2008
publication

A dual role for actin and microtubule cytoskeleton in the transport of Golgi units from the nurse cells to the oocyte across ring canals

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02 Nov 2008
publication

High-resolution statistical mapping reveals gene territories in live yeast

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01 Nov 2008
publication

Learning and survival of newly generated neurons: when time matters

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17 May 2008
publication

Improving single particle localization with an empirically calibrated Gaussian kernel

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27 Dec 2007
publication

Quantification of interstitial fibrosis by image analysis on routine renal biopsy in patients receiving cyclosporine

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01 Oct 2007
publication

Quantification of interstitial fibrosis by image analysis on routine renal biopsy 1 year after transplantation in patients managed by C2 monitoring of cyclosporine microemulsion

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27 Apr 2007
publication

An automatic image analysis approach to quantify stained cell cultures

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01 Apr 2007
publication

Gaussian approximations of fluorescence microscope point-spread function models

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01 Jan 2007
publication

Parametric blind deconvolution for confocal laser scanning microscopy

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11 Oct 2006
publication

Olfactory discrimination learning increases the survival of adult-born neurons in the olfactory bulb

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01 Oct 2006
publication

Quantitative four-dimensional tracking of cytoplasmic and nuclear HIV-1 complexes

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24 Jul 2006
publication

Cerebral microcirculation shear stress levels determine Neisseria meningitidis attachment sites along the blood-brain barrier

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01 Jun 2006
publication

SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope

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01 May 2006
publication

Multiple particle tracking in 3-D+t microscopy: method and application to the tracking of endocytosed quantum dots

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01 Apr 2006
publication

Richardson-Lucy algorithm with total variation regularization for 3D confocal microscope deconvolution

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01 Feb 2006
publication

Human tumor necrosis factor is a chemoattractant for the parasite Entamoeba histolytica

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16 Jan 2006
publication

Telomere tethering at the nuclear periphery is essential for efficient DNA double strand break repair in subtelomeric region

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01 Nov 2005
publication

Coupled parametric active contours

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01 Sep 2005
publication

Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces

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20 Jul 2005
publication

Neonatal and adult neurogenesis provide two distinct populations of newborn neurons to the mouse olfactory bulb

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14 Jul 2005
publication

Human MxA protein participates to the interferon-related inhibition of hepatitis B virus replication in female transgenic mice

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01 Jan 2005
publication

Myosin II and the Gal-GalNAc lectin play a crucial role in tissue invasion by Entamoeba histolytica

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19 Jul 2004
publication

Cortactin and Crk cooperate to trigger actin polymerization during Shigella invasion of epithelial cells

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01 Jul 2004
publication

Imaging movement of malaria parasites during transmission by Anopheles mosquitoes

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01 Jun 2003
publication

Anti-inflammatory role for intracellular dimeric immunoglobulin a by neutralization of lipopolysaccharide in epithelial cells

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15 Jan 2003
publication

The metabotropic glutamate receptor mGluR5 is endocytosed by a clathrin-independent pathway

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01 Jan 2003
publication

EhPAK, a member of the p21-activated kinase family, is involved in the control of Entamoeba histolytica migration and phagocytosis

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01 Nov 2002
publication

Membrane-cytoskeleton interactions during the formation of the immunological synapse and subsequent T-cell activation

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01 Oct 2002
publication

Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours: a tool for cell-based drug testing

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01 Mar 2002
publication

Nuclear architecture and spatial positioning help establish transcriptional states of telomeres in yeast

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15 Feb 2002
publication

A central role for Plasmodium falciparum subtelomeric regions in spatial positioning and telomere length regulation

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01 Nov 2001
publication

The membrane-microfilament linker ezrin is involved in the formation of the immunological synapse and in T cell activation

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01 Jun 2001
publication

Dual function of rhoD in vesicular movement and cell motility

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01 Jan 2000
publication

Nuclear pore complexes in the organization of silent telomeric chromatin

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01 Apr 1999
publication

Myosin IB from Entamoeba histolytica is involved in phagocytosis of human erythrocytes

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14 Jan 1999
publication

Receptor-mediated substrate translocation through the nuclear pore complex without nucleotide triphosphate hydrolysis

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01 Jan 1999
publication

Dual-color visualization of trans-Golgi network to plasma membrane traffic along microtubules in living cells

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16 Nov 1998
publication

Interferon alpha inhibits a Src-mediated pathway necessary for Shigella-induced cytoskeletal rearrangements in epithelial cells

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01 Jun 1998
publication

Virulence and functions of myosin II are inhibited by overexpression of light meromyosin in Entamoeba histolytica

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01 Feb 1998
publication

A role for microtubule dynamics in phagosome movement

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01 Jan 1998
publication

Localization of three human polypeptide GalNAc-transferases in HeLa cells suggests initiation of O-linked glycosylation throughout the Golgi apparatus

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01 Dec 1997
publication

Cellular expression and proteolytic processing of presenilin proteins is developmentally regulated during neuronal differentiation

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01 Dec 1997
publication

Dendroaxonal transcytosis of transferrin in cultured hippocampal and sympathetic neurons

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01 Apr 1997
publication

Molecular requirements for bi-directional movement of phagosomes along microtubules

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01 Oct 1993
publication

Two rhombomeres are altered in Hoxa-1 mutant mice

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01 Feb 1992
publication

Regional expression of the homeobox gene Nkx-2.2 in the developing mammalian forebrain

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01 Dec 1991
publication

[Functional microscopic imaging of the thyroid gland with the help of analytical ion microscopy]

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01 Dec 1991
publication

Image registration and distortion correction in ion microscopy

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01 Dec 1990
publication

Digital correlation of ion and optical microscopic images: application to the study of thyroglobulin chemical modification

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01 Oct 1989
publication

Microcomputer system for ion microscopy digital imaging and processing

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01 Jan 1986
publication

Excimer laser surgery of the cornea: qualitative and quantitative aspects of photoablation according to the energy density

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