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About

The Biological Image Analysis Unit (BIA) develops and improves on original and rigorous methodologies for the quantification of 3D multichannel image sequences in biological imaging, at the cellular and molecular level, but also at the level of organizations.

This includes the spatial analysis of biomolecules, the dynamics of sub-cellular organelles, the biophysics of cell motility, the spatio-temporal orchestration of cellular trafficking, the spreading of pathogens or the analysis of social behaviour in mice.

Our work focuses on mathematical imaging, biophysically augmented optical flow, active contours models, spatial statistics and deep learning. We also work on digital pathology and colour image analysis.

Our mathematical tools are first developed in collaboration with biologists who provide images and biological questions. For this purpose, we have a P2 type laboratory for the culture and labeling of eukaryotic cells, biochemistry and molecular biology, in the perspective of microscopy experiments.

Then, our state of the art programs as well as those of other laboratories worldwide are made available to the scientific community through the free and open source software platform Icy developed in our unit. (http://icy.bioimageanalysis.org)

Members

Former Members

2000
2000
Name
Position
2007
2014
Christophe Zimmer
Head of Structure
2005
2008
Sylvain Berlemont
Post-doc
2006
2010
Nicolas Chenouard
Post-doc
2007
2011
Marcio Marim
Post-doc
2009
2011
Nicolas Hervé
Post-doc
2010
2012
Praveen Pankajakshan
Post-doc
2009
2011
François Orieux
Post-doc
2008
2008
Clovis Tauber
Post-doc
2010
2013
Yoann Le Montagner
PhD Student
Sorin Pop
Post-doc
Timothée Lecomte
Post-doc
Robin Tournemenne
Graduate Student
Debora Petropolis
Post-doc
Manon Faure
Master Student
Raphaël Marée
Post-doc
Mohammed Bellafquih
Research Engineer
Judith Pineau
Master Student
Alexandre Dufour
Permanent Researcher
Giacomo Nardi
Post-doc
Osvaldo Fuica
Research Engineer
Silvia Castellanos Castro
Visiting Scientist
William Meiniel
PhD Student
2016
2018
Arturo Aguilar
Visiting Scientist
2011
2020
Fabrice de Chaumont
Research Engineer
2018
2020
Sophie Goyard
Permanent Researcher
2018
2020
Thierry Rose
Permanent Researcher
2020
2021
Alba Petracchini
Master Student
2017
2021
Aleix Boquet Pujadas
Post-Doc
2021
2021
Lea Lesbats
Graduate Student
2021
2021
Marc Bokobza
Graduate Student
2021
2021
Corentin Vannier
Graduate Student
2021
2021
Mounib Mohamed Benimam
Graduate Student
Show all

Courses

Webinar d’introduction à Icy pour le rtMFM

Analyses d’images avec le logiciel Icy https://youtu.be/mmFW_qufRa8

2021-01-12 14:00:00 2021-01-12 18:00:00 Europe/Paris Webinar d’introduction à Icy pour le rtMFM Analyses d’images avec le logiciel Icy https://youtu.be/mmFW_qufRa8 Pasteur Institute, Rue du Docteur Roux, Paris, France

Webinar d’introduction à Icy pour la NEUBIAS Academy

Introduction 0:01 Part I: “Icy, a bioimage analysis software bridging people across disciplines” 5:10 Part 2:”Protocols, making quantitative analyses accessible to everyone” 29:18 Part 3:”Community, get involved!” 57:35 ======== Content: Icy (http://icy.bioimageanalysis.org/) is a […]

2020-04-26 14:00:00 2020-04-26 18:00:00 Europe/Paris Webinar d’introduction à Icy pour la NEUBIAS Academy Introduction 0:01 Part I: “Icy, a bioimage analysis software bridging people across disciplines” 5:10 Part 2:”Protocols, making quantitative analyses accessible to everyone” 29:18 Part 3:”Community, get involved!” 57:35 ======== Content: Icy (http://icy.bioimageanalysis.org/) is a […] Pasteur Institute, Rue du Docteur Roux, Paris, France

Webinar sur les méthodes de colocalisation avancées (SODA) pour la NEUBIAS Academy

In this webinar from the NEUBIAS Academy @Home series, we will first present advanced colocalization methods for analyzing SMLM data, before introducing statistical tools for analyzing the spatial distribution of objects.Part1: By generating point […]

2020-10-14 14:00:00 2020-10-14 18:00:00 Europe/Paris Webinar sur les méthodes de colocalisation avancées (SODA) pour la NEUBIAS Academy In this webinar from the NEUBIAS Academy @Home series, we will first present advanced colocalization methods for analyzing SMLM data, before introducing statistical tools for analyzing the spatial distribution of objects.Part1: By generating point […] Pasteur Institute, Rue du Docteur Roux, Paris, France

12th IEEE EMBS – International Summer School on Biomedical Imaging, 16-24 June, 2016

The spirit of this Summer School is inspired by the most prestigious school ever founded in France, Saint Flour, the influence of which has spread to generations of researchers in Mathematics. Since its establishment […]

2016-06-16 20:00:00 2016-06-24 18:00:00 Europe/Paris 12th IEEE EMBS – International Summer School on Biomedical Imaging, 16-24 June, 2016 The spirit of this Summer School is inspired by the most prestigious school ever founded in France, Saint Flour, the influence of which has spread to generations of researchers in Mathematics. Since its establishment […] Saint-Jacut-de-la-Mer, Brittany, France

Projects

Transversal Project

Software

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Contact

25, Rue du Docteur Roux
75724 Paris Cedex 15 FRANCE
Tel + 33 (0)1 45 68 85 06
Fax + 33 (0)1 40 61 33 30
Email : jcolivo@pasteur.fr