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About

The Biological Image Analysis Unit (AIB) develops and perfects original and rigorous methodologies for the quantification of 3D multichannel image sequences in biological imaging, at the cellular and molecular level, but also at the level of organizations.

This includes the spatial analysis of biomolecules, the dynamics of sub-cellular organelles, the biophysics of cell motility, the spatio-temporal orchestration of cellular trafficking, the spreading of pathogens or the analysis of social behaviour in mice.

Our work focuses on mathematical imaging, biophysically augmented optical flow, active contours models, spatial statistics and deep learning. We also work on digital pathology and colour image analysis.

Our mathematical tools are first developed in collaboration with biologists who provide images and biological questions. For this purpose, we have a P2 type laboratory for the culture and labeling of eukaryotic cells, biochemistry and molecular biology, in the perspective of microscopy experiments.

Then, our state of the art programs as well as those of other laboratories worldwide are made available to the scientific community through the free and open source software platform Icy developed in our unit (http://icy.bioimageanalysis.org).

Members

Former Members

2000
2000
Name
Position
2014
2020
Christophe Zimmer
Head of Structure
2014
2020
Sylvain Berlemont
Post-doc
2014
2020
Nicolas Chenouard
Post-doc
2007
2011
Marcio Marim
Post-doc
2014
2020
Azadeh Saffarian
Post-doc
2014
2020
Nicolas Hervé
2014
2020
Praveen Pankajakshan
2014
2020
François Orieux
2014
2020
Clovis Tauber
Post-doc
2014
2020
Yoann Le Montagner
PhD Student
2014
2020
Sorin Pop
Post-doc
2014
2020
Timothée Lecomte
Post-doc
2014
2020
Robin Tournemenne
Graduate Student
2014
2020
Debora Petropolis
Post-doc
2014
2020
Manon Faure
2014
2020
Raphaël Marée
Post-doc
2014
2020
Mohammed Bellafquih
2014
2020
Alexandre Dufour
Permanent Researcher
2014
2020
Giacomo Nardi
Post-doc
2014
2020
Osvaldo Fuica
Research Engineer
2014
2020
Silvia Castellanos Castro
Visiting Scientist
2014
2020
William Meiniel
PhD Student
2014
2020
Arturo Aguilar
Visiting Scientist
2014
2020
Fabrice de Chaumont
Research Engineer
2014
2020
Sophie Goyard
(FR) Permanent Reasearcher
2014
2020
Thierry Rose
Permanent Researcher
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Courses

12th IEEE EMBS – International Summer School on Biomedical Imaging, 16-24 June, 2016

The spirit of this Summer School is inspired by the most prestigious school ever founded in France, Saint Flour, the influence of which has spread to generations of researchers in Mathematics. Since its establishment […]

2016-06-16 20:00:00 2016-06-24 18:00:00 Europe/Paris 12th IEEE EMBS – International Summer School on Biomedical Imaging, 16-24 June, 2016 The spirit of this Summer School is inspired by the most prestigious school ever founded in France, Saint Flour, the influence of which has spread to generations of researchers in Mathematics. Since its establishment […] Saint-Jacut-de-la-Mer, Brittany, France

Projects

Transversal Project

Software

Fundings

Publications

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Contact

25, Rue du Docteur Roux
75724 Paris Cedex 15 FRANCE
Tel + 33 (0)1 45 68 85 06
Fax + 33 (0)1 40 61 33 30
Email : jcolivo@pasteur.fr