Présentation
Cours
AI for Life Sciences Theoretical Workshop for Pasteur PhD students
In the frame of Pasteur 2030 strategic plan which aims to advance expertise in artificial intelligence (AI) in biological research and develop a dedicated pathway to support the autonomy and growth of young scientists, […]
Pasteur Course Principles and applications of fluorescence microscopy
This course is designed for Master’s and international PhD students planning to use advanced live-cell fluorescence microscopy in their future research. For more information and program, please, visit the course webpage. Program / Content […]
Pasteur course Advanced Bioimage Analysis with Artificial Intelligence (AI) – 2026
Topics Both tracks of the course have a specific focus on hands-on and interactive tutorials. They are meant to be convivial and foster a collaborative atmosphere between students and teachers. Each day begin with a […]
Introduction to BioImage Analysis with Python for Life Scientists – A distributed in-person training course
Interested in learning python for your image analysis needs? Want to understand how Jupyter notebooks can make your analysis workflows easier? The upcoming distributed “Image analysis with Python” beginners course is your chance. The […]
Bioinformatics program for PhD students 2023 2024
This training program in statistics, bioinformatics and image analysis, financed by INCEPTION program, begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, […]
Image Processing for Electron Microscopy – CryoTomography
The 2nd one-week practical course on Image Processing for Electron Microscopy focused on Cryo-Tomography (IPEMcryotomo) will be held at Institut Pasteur, Paris, October 3-7, 2022. Electron tomography combined with image processing is one of […]
Bioinformatics program for PhD students 2022-2023
This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […]
Bioinformatics program for PhD students 2021-2022
This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […]
Bioinformatics program for PhD students 2020-2021
This mandatory training program, required for all Institut Pasteur PhD students, begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then can […]
Microscopy – Principles and Applications of Fluorescence Microscopy
Fluorescence microscopy has revolutionized researchers’ ability to monitor cellular structures and dynamics. Over the last decades, the spectrum of applications of fluorescence microscopy has been constantly broadened by novel combinations of optics principles supported […]
Projets
Logiciel
Anciennes Équipes
Publications
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2025Pulsatile dynamics propagate crystalline order in the developing Drosophila eye, Dev Cell.
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2025Pulsatile dynamics propagate crystalline order in the developing Drosophila eye., Dev Cell 2025 Nov; (): .
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2025Backtracking metabolic dynamics in single cells predicts bacterial replication in human macrophages., Nat Commun 2025 Oct; 16(1): 9189.
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2025Beta-cell adaptation unveiled: The role of myokines in insulin-resistant mice., Cell Rep 2025 Sep; 44(9): 116283.
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2025SAMJ: Fast Image Annotation on ImageJ/Fiji via Segment Anything Model, arXiv:2506.02783.
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2025F-BIAS: Towards a distributed national core facility for bioimage analysis., PLoS Comput Biol 2025 Jun; 21(6): e1013058.
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2025The bacterial type three secretion system induces mechanoporation of vacuolar membranes., PLoS Biol 2025 May; 23(5): e3003135.
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2024Clostridioides difficile binary toxin CDT induces biofilm-like persisting microcolonies, Gut microbes, 2024, 17 (1), pp.2444411. ⟨10.1080/19490976.2024.2444411⟩.
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2024CellTracksColab is a platform that enables compilation, analysis, and exploration of cell tracking data., PLoS Biol 2024 Aug; 22(8): e3002740.
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2024Dynamic microfluidic single-cell screening identifies pheno-tuning compounds to potentiate tuberculosis therapy., Nat Commun 2024 May; 15(1): 4175.
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