Timeline

Frédéric Lemoine

Research Engineer

21 Mar 2024

software

ConDor: Detection of Convergent Mutations in Large Protein Alignments

13 Mar 2024

publication

Distinct evolution of SARS-CoV-2 Omicron XBB and BA.2.86/JN.1 lineages combining increased fitness and antibody evasion.

07 Mar 2024

publication

Accurate Detection of Convergent Mutations in Large Protein Alignments with ConDor.

03 Jan 2024

publication

Integron cassettes integrate into bacterial genomes via widespread non-classical attG sites

01 Sep 2023

publication

BioConvert: a comprehensive format converter for life sciences.

10 Aug 2023

publication

Robustness of Felsenstein’s Versus Transfer Bootstrap Supports With Respect to Taxon Sampling.

17 Jul 2023

course

Bioinformatics program for PhD students 2023 2024

30 Jun 2023

publication

Reprohackathons: promoting reproducibility in bioinformatics through training.

24 May 2023

publication

APOBEC3F is a mutational driver of the human Monkeypox virus identified in the 2022 outbreak.

21 Apr 2023

publication

Enhanced neutralization escape to therapeutic monoclonal antibodies by SARS-CoV-2 omicron sub-lineages.

24 Jan 2023

publication

In-Depth Characterization of Full-Length Archived Viral Genomes after Nine Years of Posttreatment HIV Control.

01 Jan 2023

publication

Developing and reusing bioinformatics data analysis pipelines using scientific workflow systems.

28 Nov 2022

publication

Deciphering RNA G-quadruplex function during the early steps of HIV-1 infection.

11 Jul 2022

course

Bioinformatics program for PhD students 2022-2023

06 Jul 2022

publication

Deep learning from phylogenies to uncover the epidemiological dynamics of outbreaks.

01 Feb 2022

publication

Considerable escape of SARS-CoV-2 Omicron to antibody neutralization.

30 Nov 2021

course

Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation

01 Sep 2021

publication

Gotree/Goalign: toolkit and Go API to facilitate the development of phylogenetic workflows.

24 Aug 2021

course

Analyse de données reproductible

01 Jun 2021

publication

Maternal and neonatal outcomes related to Zika virus in pregnant women in Southern Vietnam: An epidemiological and virological prospective analysis.

24 Nov 2020

publication

Origin, evolution and global spread of SARS-CoV-2

12 Oct 2020

publication

COVID-Align: Accurate online alignment of hCoV-19 genomes using a profile HMM.

24 Sep 2020

course

Bioinformatics program for PhD students 2020-2021

03 Jun 2020

software

COVID-Align

01 Jun 2020

publication

Genomic Epidemiology of 2015-2016 Zika Virus Outbreak in Cape Verde.

26 Mar 2020

project

The dynamics of HIV-1 epidemics in Cuba (Campus France)

12 Mar 2020

course

Introduction to Molecular Phylogenetics – ENS Paris

12 Mar 2020

event

MCEB 2020

09 Nov 2019

course

Mathematical and Computational methods for Phylogenetics and Evolutionary Epidemiology – Havana 2019

09 Nov 2019

course

Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation

16 Oct 2019

publication

SpliceLauncher: a tool for detection, annotation and relative quantification of alternative junctions from RNAseq data

12 Sep 2019

course

Introduction à l’analyse Bio-informatique de séquences

02 Jul 2019

publication

NGPhylogeny.fr: new generation phylogenetic services for non-specialists

04 Jun 2019

event

MCEB 2019

04 Jun 2019

course

Introduction à la phylogénie moléculaire

29 Apr 2019

publication

Distribution and asymptotic behavior of the phylogenetic transfer distance.

05 Sep 2018

course

Analyse de séquences

19 Jul 2018

course

Morning session – Introduction to NGS data analysis

19 Jul 2018

software

Goalign/Gotree

19 Jul 2018

software

NGPhylogeny.fr

19 Jul 2018

software

Booster

19 Jul 2018

project

Bioconvert

26 Jun 2018

course

C3BI Course: Introduction to Molecular Phylogenetics – Hong Kong 2018

15 Jun 2018

project

Renewing Felsenstein’s phylogenetic bootstrap.

18 Apr 2018

publication

Renewing Felsenstein’s phylogenetic bootstrap in the era of big data

11 Apr 2018

event

MCEB 2018

08 Feb 2018

publication

Identification of novel recurrent ETV6-IGH fusions in primary central nervous system lymphoma

23 Oct 2017

course

INTRODUCTION À LA PHYLOGÉNIE MOLÉCULAIRE : CONCEPTS, METHODES ET OUTILS

26 Jul 2017

publication

Detecting splicing patterns in genes involved in hereditary breast and ovarian cancer

10 May 2017

event

MCEB 2017

16 Jan 2017

publication

Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities

21 Dec 2016

publication

Targeted Intron Retention and Excision for Rapid Gene Regulation in Response to Neuronal Activity

14 Oct 2016

project

Virogenesis

14 Oct 2016

project

NGPhylogeny.fr

11 Sep 2015

publication

Molecular analyses of juvenile granulosa cell tumors bearing AKT1 mutations provide insights into tumor biology and therapeutic leads

27 Jul 2015

nrc

Viruses of Respiratory Infections (including Influenza and SARS-CoV-2)

26 Jun 2015

team

Bioinformatics and Biostatistics HUB

06 Nov 2014

publication

Amplicon rearrangements during the extrachromosomal and intrachromosomal amplification process in a glioma

17 Dec 2013

publication

Valproic acid causes proteasomal degradation of DICER and influences miRNA expression

12 Jan 2013

publication

Gene- and exon-expression profiling reveals an extensive LPS-induced response in immune cells in patients with cirrhosis

03 Oct 2012

publication

Birth and expression evolution of mammalian microRNA genes

05 Jul 2012

publication

Lipocalin 2, the TNF-like receptor TWEAKR and its ligand TWEAK act downstream of NFAT1 to regulate breast cancer cell invasion

01 Mar 2010

publication

Concordance among digital gene expression, microarrays, and qPCR when measuring differential expression of microRNAs

16 Dec 2008

publication

SynteBase/SynteView: a tool to visualize gene order conservation in prokaryotic genomes

01 Jul 2008

publication

GenoQuery: a new querying module for functional annotation in a genomic warehouse

29 Nov 2007

publication

Assessing the evolutionary rate of positional orthologous genes in prokaryotes using synteny data

22 Sep 2007

publication

A little guide for advanced search:

ConDor: Detection of Convergent Mutations in Large Protein Alignments

Distinct evolution of SARS-CoV-2 Omicron XBB and BA.2.86/JN.1 lineages combining increased fitness and antibody evasion.

Accurate Detection of Convergent Mutations in Large Protein Alignments with ConDor.

Integron cassettes integrate into bacterial genomes via widespread non-classical attG sites

BioConvert: a comprehensive format converter for life sciences.

Robustness of Felsenstein’s Versus Transfer Bootstrap Supports With Respect to Taxon Sampling.

Bioinformatics program for PhD students 2023 2024

Reprohackathons: promoting reproducibility in bioinformatics through training.

APOBEC3F is a mutational driver of the human Monkeypox virus identified in the 2022 outbreak.

Enhanced neutralization escape to therapeutic monoclonal antibodies by SARS-CoV-2 omicron sub-lineages.

In-Depth Characterization of Full-Length Archived Viral Genomes after Nine Years of Posttreatment HIV Control.

Developing and reusing bioinformatics data analysis pipelines using scientific workflow systems.

Deciphering RNA G-quadruplex function during the early steps of HIV-1 infection.

Bioinformatics program for PhD students 2022-2023

Deep learning from phylogenies to uncover the epidemiological dynamics of outbreaks.

Considerable escape of SARS-CoV-2 Omicron to antibody neutralization.

Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation

Gotree/Goalign: toolkit and Go API to facilitate the development of phylogenetic workflows.

Analyse de données reproductible

Maternal and neonatal outcomes related to Zika virus in pregnant women in Southern Vietnam: An epidemiological and virological prospective analysis.

Origin, evolution and global spread of SARS-CoV-2

COVID-Align: Accurate online alignment of hCoV-19 genomes using a profile HMM.

Bioinformatics program for PhD students 2020-2021

COVID-Align

Genomic Epidemiology of 2015-2016 Zika Virus Outbreak in Cape Verde.

The dynamics of HIV-1 epidemics in Cuba (Campus France)

Introduction to Molecular Phylogenetics – ENS Paris

MCEB 2020

Mathematical and Computational methods for Phylogenetics and Evolutionary Epidemiology – Havana 2019

Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation

SpliceLauncher: a tool for detection, annotation and relative quantification of alternative junctions from RNAseq data

Introduction à l’analyse Bio-informatique de séquences

NGPhylogeny.fr: new generation phylogenetic services for non-specialists

MCEB 2019

Introduction à la phylogénie moléculaire

Distribution and asymptotic behavior of the phylogenetic transfer distance.

Analyse de séquences

Morning session – Introduction to NGS data analysis

Goalign/Gotree

NGPhylogeny.fr

Booster

Bioconvert

C3BI Course: Introduction to Molecular Phylogenetics – Hong Kong 2018

Renewing Felsenstein’s phylogenetic bootstrap.

Renewing Felsenstein’s phylogenetic bootstrap in the era of big data

MCEB 2018

Identification of novel recurrent ETV6-IGH fusions in primary central nervous system lymphoma

INTRODUCTION À LA PHYLOGÉNIE MOLÉCULAIRE : CONCEPTS, METHODES ET OUTILS

Detecting splicing patterns in genes involved in hereditary breast and ovarian cancer

MCEB 2017

Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities

Targeted Intron Retention and Excision for Rapid Gene Regulation in Response to Neuronal Activity

Virogenesis

NGPhylogeny.fr

Molecular analyses of juvenile granulosa cell tumors bearing AKT1 mutations provide insights into tumor biology and therapeutic leads

Viruses of Respiratory Infections (including Influenza and SARS-CoV-2)

Bioinformatics and Biostatistics HUB

Amplicon rearrangements during the extrachromosomal and intrachromosomal amplification process in a glioma

Valproic acid causes proteasomal degradation of DICER and influences miRNA expression

Gene- and exon-expression profiling reveals an extensive LPS-induced response in immune cells in patients with cirrhosis

Birth and expression evolution of mammalian microRNA genes

Lipocalin 2, the TNF-like receptor TWEAKR and its ligand TWEAK act downstream of NFAT1 to regulate breast cancer cell invasion

Concordance among digital gene expression, microarrays, and qPCR when measuring differential expression of microRNAs

SynteBase/SynteView: a tool to visualize gene order conservation in prokaryotic genomes

GenoQuery: a new querying module for functional annotation in a genomic warehouse

Assessing the evolutionary rate of positional orthologous genes in prokaryotes using synteny data

The multiple facets of homology and their use in comparative genomics to study the evolution of genes, genomes, and species