GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 57758,
label: 'Frédéric Lemoine',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/11/research_pasteur-frederic-lemoine-lemoine-frederic-26-small-crop-150x150.jpg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
var biggest_node_size = 0;
N=36
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 241447,
label: 'PROJECT: Proposed approach to evaluate the potential of avian influenza viruses of concern to undergo genetic reassortment and acquire an MxA-resistant NP segment',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/proposed-approach-to-evaluate-the-potential-of-avian-influenza-viruses-of-concern-to-undergo-genetic-reassortment-and-acquire-an-mxa-resistant-np-segment/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 57758241447,
size: 0.5,
source: 57758,
target: 241447,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 236645,
label: 'Olivier LEYMARIE',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/olivier-leymarie/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 241447236645,
size: 0.5,
source: 241447,
target: 236645 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 193543,
label: 'Jérôme Bourret',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/jerome-bourret/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 241447193543,
size: 0.5,
source: 241447,
target: 193543 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 57758) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 24144757758,
size: 0.5,
source: 241447,
target: 57758 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 193445,
label: 'Marie-Anne Rameix-Welti',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2023/01/research_pasteur-marie-anne-rameix-welti-rameix-welti-2019-e1673972371146-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marie-anne-rameix-welti/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 241447193445,
size: 0.5,
source: 241447,
target: 193445 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4923,
label: 'Nadia Naffakh',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_photo_web1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/nadia-naffakh/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2414474923,
size: 0.5,
source: 241447,
target: 4923 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 241438,
label: 'PROJECT: Monitor French respiratory virus epidemics using phylodynamics methods',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/monitor-french-respiratory-virus-epidemics-using-phylodynamics-methods/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 57758241438,
size: 0.5,
source: 57758,
target: 241438,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 241453,
label: 'Georges HANNA',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/georges-hanna/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 241438241453,
size: 0.5,
source: 241438,
target: 241453 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 57758) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 24143857758,
size: 0.5,
source: 241438,
target: 57758 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 193445) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 241438193445,
size: 0.5,
source: 241438,
target: 193445 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 228139,
label: 'SOFTWARE: Bboot: Bayesian phylogenetic bootstrap',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/software/bboot-bayesian-phylogenetic-bootstrap/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 57758228139,
size: 0.5,
source: 57758,
target: 228139,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 57758) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 22813957758,
size: 0.5,
source: 228139,
target: 57758 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 241436,
label: 'PROJECT: Accounting for defective genomes in virus consensus reconstruction',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/accounting-for-defective-genomes-in-virus-consensus-reconstruction/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 57758241436,
size: 0.5,
source: 57758,
target: 241436,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 210191,
label: 'Kevin Da Silva',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/kevin-da-silva/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 241436210191,
size: 0.5,
source: 241436,
target: 210191 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 57758) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 24143657758,
size: 0.5,
source: 241436,
target: 57758 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 193445) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 241436193445,
size: 0.5,
source: 241436,
target: 193445 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 222923,
label: 'SOFTWARE: ConDor: Detection of Convergent Mutations in Large Protein Alignments',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/software/condor-detection-of-convergent-mutations-in-large-protein-alignmentsco/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 57758222923,
size: 0.5,
source: 57758,
target: 222923,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 57911,
label: 'Anna Zhukova',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/11/research_pasteur-anna-zhukova-anna2024-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/anna-zhukova/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 22292357911,
size: 0.5,
source: 222923,
target: 57911 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 57758) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 22292357758,
size: 0.5,
source: 222923,
target: 57758 });
// adding node
var x_node = Math.cos(2 * 5 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 5 * Math.PI / N) * 10;
g.nodes.push({
id: 241426,
label: 'PROJECT: Seq4Epi: Sequencing pathogens for epidemiology',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/seq4epi-sequencing-pathogens-for-epidemiology/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 57758241426,
size: 0.5,
source: 57758,
target: 241426,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 193445) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 241426193445,
size: 0.5,
source: 241426,
target: 193445 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 210191) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 241426210191,
size: 0.5,
source: 241426,
target: 210191 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 193543) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 241426193543,
size: 0.5,
source: 241426,
target: 193543 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 57758) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 24142657758,
size: 0.5,
source: 241426,
target: 57758 });
// adding node
var x_node = Math.cos(2 * 6 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 6 * Math.PI / N) * 10;
g.nodes.push({
id: 205125,
label: 'COURSE: Bioinformatics program for PhD students 2023 2024',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/course/bioinformatics-program-for-phd-students-2023-2024/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 57758205125,
size: 0.5,
source: 57758,
target: 205125,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 84017,
label: 'Emeline Perthame',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/02/research_pasteur-emeline-perthame-2022-01-13-14.37.20-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/emeline-perthame/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 20512584017,
size: 0.5,
source: 205125,
target: 84017 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 137237,
label: 'Emmanuelle Permal',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2020/02/research_pasteur-pasteur2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/emmanuelle-permal/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 205125137237,
size: 0.5,
source: 205125,
target: 137237 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 180302,
label: 'Marvin Albert',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/05/research_pasteur-marvin-albert-photo-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marvin-albert/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 205125180302,
size: 0.5,
source: 205125,
target: 180302 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 1581,
label: 'Jean-Yves Tinevez',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/02/JYT-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/jean-yves-tinevez/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2051251581,
size: 0.5,
source: 205125,
target: 1581 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 152507,
label: 'Victoire Baillet',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/01/research_pasteur-victoire-baillet-foo2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/victoire-baillet/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 205125152507,
size: 0.5,
source: 205125,
target: 152507 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 80005,
label: 'Thomas Bigot',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/11/research_pasteur-thomas-bigot-pour-profil2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/thomas-bigot/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 20512580005,
size: 0.5,
source: 205125,
target: 80005 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
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// adding site
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// adding site
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// adding site
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// adding site
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url: 'https://research.pasteur.fr/wp-content/uploads/2023/04/research_pasteur-jeliyah-clark-liyah-graduation-2022120946-6-scaled-e1681817072198-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/jeliyah-clark/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
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// adding site
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label: 'Freddy Cliquet',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/02/research_pasteur-17637047_1396080250451325_800557458960161845_o-2-e1519724213254-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/freddy-cliquet/',
x: x_site,
y: y_site,
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color: '#dddddd'
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//check if content already exist
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//link to content
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//check if content already exist
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//link to content
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//check if content already exist
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//link to content
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//check if content already exist
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// adding site
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label: 'Stéphane Descorps-Declère',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/05/research_pasteur-img_20170804_170423_hdr-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/stephane-descorps-declere/',
x: x_site,
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//check if content already exist
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// adding site
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label: 'Dimitri Desvillechabrol',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/08/research_pasteur-dimitri_brmlab-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/dimitri-desvillechabrol/',
x: x_site,
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color: '#dddddd'
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//check if content already exist
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// adding site
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label: 'Amanda Dieuaide',
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url: '',
page_url: 'https://research.pasteur.fr/en/member/amanda-dieuaide/',
x: x_site,
y: y_site,
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//link to content
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//check if content already exist
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// adding site
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label: 'Johann Dreo',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/04/research_pasteur-johann-dreo-img-7846-profil-640px-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/johann-dreo/',
x: x_site,
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//check if content already exist
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//link to content
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//check if content already exist
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// adding site
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label: 'Evangelia Eleftheriou',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/evangelia-eleftheriou/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
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//link to content
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//check if content already exist
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//link to content
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//check if content already exist
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// adding site
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label: 'Julien Fumey',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/06/research_pasteur-fumey-julien-10-e1528383655738-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/julien-fumey/',
x: x_site,
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//link to content
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//check if content already exist
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//link to content
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//check if content already exist
// update node size depending on the amount of edges
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//link to content
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//check if content already exist
// update node size depending on the amount of edges
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//link to content
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//check if content already exist
// update node size depending on the amount of edges
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//link to content
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//check if content already exist
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//link to content
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//check if content already exist
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//link to content
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//check if content already exist
// update node size depending on the amount of edges
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//link to content
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//check if content already exist
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// adding site
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label: 'Joseph Josephides',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2024/01/research_pasteur-enjoseph-josephidesfrjoseph-josephides-joseph-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/joseph-josephides/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
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//link to content
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//check if content already exist
// update node size depending on the amount of edges
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//link to content
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target: 176108 });
//check if content already exist
// update node size depending on the amount of edges
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n.size = n.size + 8;
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//link to content
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//check if content already exist
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x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
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y_site = y_node + ((Math.random() * 2)-1) + offset_left;
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// adding site
g.nodes.push({
id: 80014,
label: 'François Laurent',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/11/research_pasteur-francois-laurent-moi-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/francois-laurent/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
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//link to content
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target: 80014 });
//check if content already exist
// update node size depending on the amount of edges
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n.size = n.size + 8;
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//link to content
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target: 90271 });
//check if content already exist
// update node size depending on the amount of edges
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//link to content
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target: 7847 });
//check if content already exist
// update node size depending on the amount of edges
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n.size = n.size + 8;
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//link to content
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//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
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y_site = y_node + ((Math.random() * 2)-1) + offset_left;
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// adding site
g.nodes.push({
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label: 'Nathalie Lehmann',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/nathalie-lehmann/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
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//link to content
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//check if content already exist
// update node size depending on the amount of edges
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//link to content
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target: 79208 });
//check if content already exist
// update node size depending on the amount of edges
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n.size = n.size + 8;
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//link to content
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target: 57758 });
//check if content already exist
// update node size depending on the amount of edges
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n.size = n.size + 8;
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//link to content
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target: 74050 });
//check if content already exist
// update node size depending on the amount of edges
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if (n.id == 65751) {
n.size = n.size + 8;
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//link to content
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target: 65751 });
//check if content already exist
// update node size depending on the amount of edges
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n.size = n.size + 8;
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//link to content
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target: 154492 });
//check if content already exist
// update node size depending on the amount of edges
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n.size = n.size + 8;
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//link to content
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//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
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y_site = y_node + ((Math.random() * 2)-1) + offset_left;
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// adding site
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label: 'Simon Malesys',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/02/research_pasteur-pasteur-profile-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/simon-malesys/',
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y: y_site,
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//link to content
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//check if content already exist
// update node size depending on the amount of edges
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//link to content
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target: 6830 });
//check if content already exist
// update node size depending on the amount of edges
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//link to content
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target: 6822 });
//check if content already exist
// update node size depending on the amount of edges
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n.size = n.size + 8;
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//link to content
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//check if content already exist
if (x_node<0){
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
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y_site = y_node + ((Math.random() * 2)-1) + offset_left;
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// adding site
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label: 'Hervé Menager',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/10/research.pasteur.fr_face-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/herve-menager/',
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y: y_site,
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color: '#dddddd'
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//link to content
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//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
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y_site = y_node + ((Math.random() * 2)-1) + offset_left;
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// adding site
g.nodes.push({
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label: 'Arnaud MENG',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2023/10/research_pasteur-enarnaud-mengfrarnaud-meng-arnaud-meng-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/arnaud-meng/',
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y: y_site,
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color: '#dddddd'
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//link to content
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//check if content already exist
// update node size depending on the amount of edges
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n.size = n.size + 8;
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//link to content
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//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
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// adding site
g.nodes.push({
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label: 'Gaël Millot',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/11/research.pasteur.fr_gael-portrait-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/gael-millot/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
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//link to content
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target: 79863 });
//check if content already exist
// update node size depending on the amount of edges
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if (n.id == 153773) {
n.size = n.size + 8;
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//link to content
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source: 18489,
target: 153773 });
//check if content already exist
// update node size depending on the amount of edges
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if (n.id == 7761) {
n.size = n.size + 8;
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//link to content
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target: 7761 });
//check if content already exist
// update node size depending on the amount of edges
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n.size = n.size + 8;
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//link to content
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target: 6833 });
//check if content already exist
// update node size depending on the amount of edges
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//link to content
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id: 1848970981,
size: 0.5,
source: 18489,
target: 70981 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 204626,
label: 'Rania Ouazahrou',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/rania-ouazahrou/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 18489204626,
size: 0.5,
source: 18489,
target: 204626 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4943) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 184894943,
size: 0.5,
source: 18489,
target: 4943 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 137237) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 18489137237,
size: 0.5,
source: 18489,
target: 137237 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 53076) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1848953076,
size: 0.5,
source: 18489,
target: 53076 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 84017) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1848984017,
size: 0.5,
source: 18489,
target: 84017 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 63334) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1848963334,
size: 0.5,
source: 18489,
target: 63334 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 123248,
label: 'Rémi Planel',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/10/research_pasteur-photos_pasteur-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/remi-planel/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 18489123248,
size: 0.5,
source: 18489,
target: 123248 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 138400,
label: 'Maguelonne Roux',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2020/01/research_pasteur-maguelonne_roux-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/fr-maguelonne-roux/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 18489138400,
size: 0.5,
source: 18489,
target: 138400 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 104985) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 18489104985,
size: 0.5,
source: 18489,
target: 104985 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 218702,
label: 'Marie Schmit',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2024/01/research_pasteur-enmarie-schmitfrmarie-schmit-moi-photo-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/marie-schmit/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 18489218702,
size: 0.5,
source: 18489,
target: 218702 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 218693,
label: 'Raphaël Tackx',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/raphael-tackx/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 18489218693,
size: 0.5,
source: 18489,
target: 218693 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 90107) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1848990107,
size: 0.5,
source: 18489,
target: 90107 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 7763) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 184897763,
size: 0.5,
source: 18489,
target: 7763 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 187500,
label: 'Nicolas Traut',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/09/research_pasteur-nicolas-traut-photo-nicolas-upscaled-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/nicolas-traut/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 18489187500,
size: 0.5,
source: 18489,
target: 187500 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 2237) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 184892237,
size: 0.5,
source: 18489,
target: 2237 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 101015) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 18489101015,
size: 0.5,
source: 18489,
target: 101015 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 7762) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 184897762,
size: 0.5,
source: 18489,
target: 7762 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 57911) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1848957911,
size: 0.5,
source: 18489,
target: 57911 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 906) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 18489906,
size: 0.5,
source: 18489,
target: 906 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 6,
maxNodeSize: 35,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#999',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});