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Présentation
Cours
From genes to function: a survival guide to web-based tools for microbiologists
Target Audience: PhD students, Post-doctoral fellows, Research Staff and PIs that work in any field related to microbiology that requires to understand or predict gene function. Summary: Methods to allow experimental scientists lacking computer […]
2019-06-17 08:30:00
2019-06-21 17:30:00
Europe/Paris
From genes to function: a survival guide to web-based tools for microbiologists
Target Audience: PhD students, Post-doctoral fellows, Research Staff and PIs that work in any field related to microbiology that requires to understand or predict gene function. Summary: Methods to allow experimental scientists lacking computer […]
Institut Pasteur, Rue du Docteur Roux, Paris, France
Introduction to data analysis
This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […]
2017-01-16 09:00:00
2017-02-17 13:00:00
Europe/Paris
Introduction to data analysis
This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […]
28 Rue du Docteur Roux, Paris, France
Introduction to Data Analysis
This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […]
Hub de Bioinformatique et Biostatistique
INCEPTION – INstitut Convergences pour l’étude de l’Émergence des Pathologies au Travers des Individus et des populatiONs
Marie-Agnès Dillies
Stéphane Descorps Declere
Vincent Guillemot
Emeline Perthame
Hugo Varet
Stevenn Volant
Thomas Obadia
Gaël Millot
Quentin Giai Gianetto
Anne Biton
Christophe Becavin
2018-01-08 09:00:00
2018-02-02 00:00:00
Europe/Paris
Introduction to Data Analysis
This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […]
28 Rue du Docteur Roux, Paris, France
Projets
CV
Professional Experience
Today – Institut Pasteur – HUB Team
2009 – 2015 – Institut Pasteur – Bioinformatician
2006 – 2009 – CNRS, Orsay – Institut Génétique et Microbiologie – PostDoc
2002 – 2006 – INRIA, Grenoble – Ph.D
2000 – 2002 – INRIA, Action Helix, Grenoble – Expert engineer
1999 – 2000 – Infobiogen – Université EVE, Evry – Engineer
Education
2002 – 2006 Thesis Paris VI, INRIA, Grenoble.
1999 – 2000 DESS Informatique Appliquée à la Biologie, UPMC
1997 – 1998 Maîtrise Biologie cellulaire et Physiologie animale, UPMC
Publications
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2022The cnf1 gene is associated with an expanding Escherichia coli ST131 H30Rx/C2 subclade and confers a competitive advantage for gut colonization., Gut Microbes ; 14(1): 2121577.
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2022Megasatellite formation and evolution in vertebrate genes., Cell Rep 2022 Sep; 40(11): 111347.
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2021Differential efficacies of Cas nucleases on microsatellites involved in human disorders and associated off-target mutations., Nucleic Acids Res 2021 08; 49(14): 8120-8134.
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2019Shigella promotes major alteration of gut epithelial physiology and tissue invasion by shutting off host intracellular transport., Proc Natl Acad Sci U S A 2019 07; 116(27): 13582-13591.
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2018Characterizing meiotic chromosomes’ structure and pairing using a designer sequence optimized for Hi-C, Mol. Syst. Biol. 2018 07;14(7):e8293.
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2016Improved assembly procedure of viral RNA genomes amplified with Phi29 polymerase from new generation sequencing data, Biol. Res. 2016 Sep;49(1):39.
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2015Genome-wide replication landscape of Candida glabrata, BMC Biol. 2015 Sep;13:69.
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2014Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline., Nat Commun. 2014 Aug 4;5:4544 Erratum in : Nat Commun. 2015; 6:6108.