Timeline

Claudia Chica

Research Engineer

02 Jul 2024

publication

Epithelial cells maintain memory of prior infection with Streptococcus pneumoniae through di-methylation of histone H3.

08 Sep 2023

publication

Epigenomic signature of accelerated ageing in progeroid Cockayne syndrome.

17 Jul 2023

course

Bioinformatics program for PhD students 2023 2024

23 Sep 2022

course

PHINDaccess – Comparative Genomics

11 Jul 2022

course

Bioinformatics program for PhD students 2022-2023

10 Jun 2022

software

ePeak

01 Jun 2022

publication

ePeak: from replicated chromatin profiling data to epigenomic dynamics.

31 May 2022

course

PHINDaccess – Functional OMICs

01 Dec 2021

publication

SCHNAPPs – Single Cell sHiNy APPlication(s).

01 Sep 2021

publication

The CovR regulatory network drives the evolution of Group B Streptococcus virulence.

24 Sep 2020

course

Bioinformatics program for PhD students 2020-2021

08 Nov 2019

tool

Single Cell Data Analysis

30 Oct 2019

tool

Single Cell Transcriptomics, Epigenetic and Genomics (GEX, ATAC, ADT, Multiome)

28 Sep 2019

project

PHINDaccess

12 Jun 2019

course

High Throughput Sequencing Data Analysis on Genomics, Metagenomics and Transcriptomics

22 Oct 2018

publication

SUMO safeguards somatic and pluripotent cell identities by enforcing distinct chromatin states

19 Jul 2018

course

Morning session – Introduction to NGS data analysis

19 Jul 2018

course

Introduction to Data Analysis

28 Mar 2018

team

Expertise group: GORE – Genome Organization Regulation and Expression

31 Oct 2017

course

Hands-on course on High Throughput Sequencing data analysis: Genomics, Transcriptomics, Epigenomics

31 Oct 2017

publication

Comparative epigenomics in the Brassicaceae reveals two evolutionarily conserved modes of PRC2-mediated gene regulation

09 Jan 2017

event

Genetic basis of gene regulation: genome-wide models and applications to diagnosis

09 Jan 2017

event

Pathogen dynamics through a phylogenetic lens – zooming into the spread of Ebola, Diphtheria, Tuberculosis, Influenza and HIV

09 Jan 2017

event

[Canceled] Whole cell model and engineering of Mycoplasma pneumoniae as an universal vaccine

09 Jan 2017

event

Inferring antimicrobial resistance from whole genome sequencing

09 Jan 2017

event

From bacterial gene expression decomposition to Synthetic Biology

09 Jan 2017

event

Linking Large-Scale Genomic Rearrangements to 3D Chromatin Structure

09 Jan 2017

event

RNA-mediated regulation of antibiotics resistance in the human microbiome

09 Jan 2017

event

Micro- and nano-fluidic technologies for minute DNA sample analysis: application to genomic analysis of cultured cells and circulating DNA

09 Jan 2017

event

An integrated, structure- and energy-based view of decoding: translation and cellular homeostasys

09 Jan 2017

event

RNA viruses: characterizing hidden features revealed via comparative genomics

11 Nov 2016

event

Ecole thématique – Bioinformatics of protein-protein interactions for wet lab scientists

26 Jun 2015

team

Bioinformatics and Biostatistics HUB

02 Feb 2015

publication

Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation

21 Nov 2011

publication

ELM–the database of eukaryotic linear motifs

09 Nov 2010

publication

Phospho.ELM: a database of phosphorylation sites–update 2011

17 Nov 2009

publication

ELM: the status of the 2010 eukaryotic linear motif resource

08 Jul 2009

publication

Evidence for the concerted evolution between short linear protein motifs and their flanking regions

24 Nov 2008

publication

KEPE–a motif frequently superimposed on sumoylation sites in metazoan chromatin proteins and transcription factors

06 May 2008

publication

A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences

01 May 2008

publication

Understanding eukaryotic linear motifs and their role in cell signaling and regulation

25 Apr 2008

publication

A new protein linear motif benchmark for multiple sequence alignment software

09 Jan 2008

publication

Discovery of candidate KEN-box motifs using cell cycle keyword enrichment combined with native disorder prediction and motif conservation

25 Oct 2007

publication

Phospho.ELM: a database of phosphorylation sites–update 2008

01 Jan 2007

publication

Compressing proteomes: the relevance of medium range correlations

01 Dec 2006

publication

A little guide for advanced search:

Epithelial cells maintain memory of prior infection with Streptococcus pneumoniae through di-methylation of histone H3.

Epigenomic signature of accelerated ageing in progeroid Cockayne syndrome.

Bioinformatics program for PhD students 2023 2024

PHINDaccess – Comparative Genomics

Bioinformatics program for PhD students 2022-2023

ePeak

ePeak: from replicated chromatin profiling data to epigenomic dynamics.

PHINDaccess – Functional OMICs

SCHNAPPs – Single Cell sHiNy APPlication(s).

The CovR regulatory network drives the evolution of Group B Streptococcus virulence.

Bioinformatics program for PhD students 2020-2021

Single Cell Data Analysis

Single Cell Transcriptomics, Epigenetic and Genomics (GEX, ATAC, ADT, Multiome)

PHINDaccess

High Throughput Sequencing Data Analysis on Genomics, Metagenomics and Transcriptomics

SUMO safeguards somatic and pluripotent cell identities by enforcing distinct chromatin states

Morning session – Introduction to NGS data analysis

Introduction to Data Analysis

Expertise group: GORE – Genome Organization Regulation and Expression

Hands-on course on High Throughput Sequencing data analysis: Genomics, Transcriptomics, Epigenomics

Comparative epigenomics in the Brassicaceae reveals two evolutionarily conserved modes of PRC2-mediated gene regulation

Genetic basis of gene regulation: genome-wide models and applications to diagnosis

Pathogen dynamics through a phylogenetic lens – zooming into the spread of Ebola, Diphtheria, Tuberculosis, Influenza and HIV

[Canceled] Whole cell model and engineering of Mycoplasma pneumoniae as an universal vaccine

Inferring antimicrobial resistance from whole genome sequencing

From bacterial gene expression decomposition to Synthetic Biology

Linking Large-Scale Genomic Rearrangements to 3D Chromatin Structure

RNA-mediated regulation of antibiotics resistance in the human microbiome

Micro- and nano-fluidic technologies for minute DNA sample analysis: application to genomic analysis of cultured cells and circulating DNA

An integrated, structure- and energy-based view of decoding: translation and cellular homeostasys

RNA viruses: characterizing hidden features revealed via comparative genomics

Ecole thématique – Bioinformatics of protein­-protein interactions for wet lab scientists

Bioinformatics and Biostatistics HUB

Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation

ELM–the database of eukaryotic linear motifs

Phospho.ELM: a database of phosphorylation sites–update 2011

ELM: the status of the 2010 eukaryotic linear motif resource

Evidence for the concerted evolution between short linear protein motifs and their flanking regions

KEPE–a motif frequently superimposed on sumoylation sites in metazoan chromatin proteins and transcription factors

A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences

Understanding eukaryotic linear motifs and their role in cell signaling and regulation

A new protein linear motif benchmark for multiple sequence alignment software

Discovery of candidate KEN-box motifs using cell cycle keyword enrichment combined with native disorder prediction and motif conservation

Phospho.ELM: a database of phosphorylation sites–update 2008

Compressing proteomes: the relevance of medium range correlations

Adéquation Germany, meeting the needs of scientists in the developing world

Ecole thématique – Bioinformatics of protein-protein interactions for wet lab scientists