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  • team
  • department
  • center
  • program_project
  • nrc
  • whocc
  • project
  • software
  • tool
  • patent
  • Administrative Staff
  • Assistant Professor
  • Associate Professor
  • Clinical Research Assistant
  • Full Professor
  • Graduate Student
  • Lab assistant
  • Non-permanent Researcher
  • Permanent Researcher
  • Pharmacist
  • PhD Student
  • Physician
  • Post-doc
  • Project Manager
  • Research Associate
  • Research Engineer
  • Retired scientist
  • Technician
  • Undergraduate Student
  • Veterinary
  • Visiting Scientist
  • Deputy Director of Center
  • Deputy Director of Department
  • Deputy Director of National Reference Center
  • Deputy Head of Facility
  • Director of Center
  • Director of Department
  • Director of Institute
  • Director of National Reference Center
  • Group Leader
  • Head of Facility
  • Head of Structure
  • Honorary President of the Departement
  • Labex Coordinator
  • Operational and administrative manager
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Scientific Fields
Diseases
Organisms
Applications
Technique
Starting Date
19
Jul 2018
Status
Ongoing
Members
5
Structures
2

About

We develop phylodynamics models and methods to study viral epidemics, in particular HIV. This new, trendy domain is in between usual mathematical epidemiology, typically based on compartment models, and phylogenetics. The models used in phylodynamics share the common assumption that new cases are detected randomly. However, a key counter-example is given by partner notification (PN), one of the most widely used control measure against sexually transmitted infections. Our goal is to assess and model the public health impact of PN on HIV epidemics, and study possible observation biases induced by PN. Phylodynamics models are usually complex and writing down the likelihood of the data is often impossible. Thus, we develop approximate Bayesian computation (ABC) methods, which we apply to several data sets and questions (e.g. Ebola). This project is partly funded by a joint project with the Institute of Tropical Medicine “Pedro Kouri”, Havana, Cuba.