Timeline
Sylvain Brisse
Head of Structure
20 Feb 2025
13 Feb 2025
publication
Clinical characteristics of cases during the 2024 pertussis epidemic in France, January 2024 to December 2024.
Read more01 Feb 2025
publication
Diphtheria Toxin-Producing Corynebacterium ramonii in Inner-City Population, Vancouver, British Columbia, Canada, 2019-2023.
Read more02 Jan 2025
01 Jan 2025
01 Jan 2025
01 Jan 2025
publication
First detection of the high-risk Klebsiella pneumoniae ST147 clone producing NDM-14 in a community setting in Morocco: A new public health concern.
Read more21 Dec 2024
publication
Multiple regional outbreaks caused by global and local VIM-producing Klebsiella pneumoniae clones in Poland, 2006-2019.
Read more06 Dec 2024
publication
Comment on: Co-occurrence of the cephalosporinase cepA and carbapenemase cfiA genes in a Bacteroides fragilis Division II strain: an unexpected finding
Read more01 Dec 2024
publication
Cutaneous diphtheria from 2018 to 2022: an observational, retrospective study of epidemiological, microbiological, clinical, and therapeutic characteristics in metropolitan France.
Read more29 Nov 2024
22 Oct 2024
publication
Triplex real-time PCR ZKIR-T assay for simultaneous detection of the Klebsiella pneumoniae species complex and identification of K. pneumoniae sensu stricto.
Read more01 Oct 2024
publication
Diversity, functional classification and genotyping of SHV β-lactamases in Klebsiella pneumoniae.
Read more01 Oct 2024
publication
Diversity, functional classification and genotyping of SHV β-lactamases in Klebsiella pneumoniae.
Read more19 Sep 2024
publication
Association between pertactin-producing Bordetella pertussis and fulminant pertussis in infants: a multicenter study in France, 2008-2019.
Read more01 Aug 2024
publication
Bacteraemia associated with multiple septic localizations caused by Klebsiella pneumoniae sequence type ST660.
Read more01 Aug 2024
publication
Retrospective Study of Infections with Corynebacterium diphtheriae Species Complex, French Guiana, 2016-2021.
Read more01 Aug 2024
publication
Resurgence of Bordetella pertussis, including one macrolide-resistant isolate, France, 2024.
Read more15 Jul 2024
event
Waterborne disease (Leptospirosis) and Water Surveillance – Virtual Training – GenEpi-BioTrain
Read more01 Jul 2024
30 Apr 2024
25 Apr 2024
publication
Systematic interrogation of CRISPR antimicrobials in Klebsiella pneumoniae reveals nuclease-, guide- and strain-dependent features influencing antimicrobial activity.
Read more11 Apr 2024
18 Mar 2024
publication
Corynebacterium diphtheriae and Corynebacterium ulcerans : development of EUCAST methods and generation of data on which to determine breakpoints
Read more06 Feb 2024
publication
Molecular characteristics, fitness, and virulence of high-risk and non-high-risk clones of carbapenemase-producing Klebsiella pneumoniae.
Read more01 Feb 2024
publication
A validated pangenome-scale metabolic model for the Klebsiella pneumoniae species complex.
Read more20 Jan 2024
project
The GenEpi-BioTrain programme: Interdisciplinary training in genomic epidemiology and public health bioinformatics
Read more01 Jan 2024
publication
Towards unified reporting of genome sequencing results in clinical microbiology.
Read more01 Nov 2023
publication
Multidrug-resistant Corynebacterium diphtheriae in people with travel history from West Africa to France, March to September 2023.
Read more01 Nov 2023
publication
Plugging the leaks: antibiotic resistance at human-animal interfaces in low-resource settings.
Read more31 Aug 2023
publication
A global Corynebacterium diphtheriae genomic framework sheds light on current diphtheria reemergence
Read more10 Aug 2023
publication
Corynebacterium ramonii sp. nov., a novel toxigenic member of the Corynebacterium diphtheriae species complex.
Read more01 Aug 2023
publication
Emerging Corynebacterium diphtheriae Species Complex Infections, Réunion Island, France, 2015-2020.
Read more06 Jul 2023
publication
Genomic features of Klebsiella isolates from artisanal ready-to-eat food production facilities.
Read more20 Jun 2023
publication
Phages against Noncapsulated Klebsiella pneumoniae: Broader Host range, Slower Resistance.
Read more01 May 2023
publication
Biological differences between FIM2 and FIM3 fimbriae of Bordetella pertussis: not just the serotype
Read more27 Apr 2023
12 Apr 2023
06 Apr 2023
publication
Corynebacteria of the diphtheriae Species Complex in Companion Animals: Clinical and Microbiological Characterization of 64 Cases from France.
Read more29 Mar 2023
publication
Defining genomic epidemiology thresholds for common-source bacterial outbreaks: a modelling study.
Read more15 Mar 2023
project
PERT-SEVERE II – Impact de l’expression bactérienne et de la réponse immunitaire dans la gravité de la coqueluche
Read more01 Feb 2023
publication
Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae.
Read more01 Jan 2023
publication
Multidrug-resistant toxigenic Corynebacterium diphtheriae sublineage 453 with two novel resistance genomic islands.
Read more01 Dec 2022
publication
A large-scale genomic snapshot of Klebsiella spp. isolates in Northern Italy reveals limited transmission between clinical and non-clinical settings.
Read more24 Nov 2022
15 Oct 2022
project
PER-SEVERE: Defining the contribution of variable microbial factors and host immunity to pertussis severity
Read more20 Sep 2022
publication
Detection of Klebsiella pneumoniae human gut carriage: a comparison of culture, qPCR, and whole metagenomic sequencing methods.
Read more12 Sep 2022
publication
Limited Transmission of Klebsiella pneumoniae among Humans, Animals, and the Environment in a Caribbean Island, Guadeloupe (French West Indies).
Read more11 Jul 2022
01 Jul 2022
publication
A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies.
Read more30 Jun 2022
14 Jun 2022
publication
A dual barcoding approach to bacterial strain nomenclature: Genomic taxonomy of Klebsiella pneumoniae strains
Read more01 Jun 2022
publication
Association between the COVID-19 pandemic and pertussis derived from multiple nationwide data sources, France, 2013 to 2020.
Read more19 May 2022
publication
Transmission of Klebsiella strains and plasmids within and between grey-headed flying fox colonies.
Read more17 May 2022
publication
In Vitro and In Vivo Assessments of Two Newly Isolated Bacteriophages against an ST13 Urinary Tract Infection Klebsiella pneumoniae.
Read more27 Apr 2022
publication
Characterization of Klebsiella pneumoniae isolated from patients suspected of pulmonary or bubonic plague during the Madagascar epidemic in 2017.
Read more27 Apr 2022
publication
Global spatial dynamics and vaccine-induced fitness changes of Bordetella pertussis.
Read more01 Apr 2022
publication
Pertussis surveillance results from a French general practitioner network, France, 2017 to 2020.
Read more26 Mar 2022
publication
In vitro and in silico parameters for precise cgMLST typing of Listeria monocytogenes.
Read more11 Mar 2022
publication
A curated collection of Klebsiella metabolic models reveals variable substrate usage and gene essentiality.
Read more23 Feb 2022
publication
Multilateral benefit-sharing from digital sequence information will support both science and biodiversity conservation.
Read more11 Feb 2022
publication
Klebsiella MALDI TypeR: a web-based tool for Klebsiella identification based on MALDI-TOF mass spectrometry.
Read more01 Jan 2022
publication
Genomic evolution of the globally disseminated multidrug-resistant Klebsiella pneumoniae clonal group 147.
Read more03 Dec 2021
publication
Emergence and global spread of Listeria monocytogenes main clinical clonal complex.
Read more18 Nov 2021
publication
Cutaneous diphtheria: 3 case-reports to discuss determinants of re-emergence in resource-rich settings.
Read more09 Nov 2021
publication
Spontaneous and post-surgical/traumatic Klebsiella pneumoniae meningitis: two distinct clinic-microbiological entities.
Read more29 Oct 2021
18 Oct 2021
publication
Effect of change in vaccine schedule on pertussis epidemiology in France: a modelling and serological study.
Read more15 Sep 2021
01 Sep 2021
publication
Evolution of Bordetella pertussis over a 23-year period in France, 1996 to 2018.
Read more01 Aug 2021
publication
Ongoing diphtheria outbreak in Yemen: a cross-sectional and genomic epidemiology study.
Read more09 Jul 2021
09 Jul 2021
project
HoloZcan – Deep Learning Powered Holographic Microscopy for Biothreat Detection on Field
Read more05 Jul 2021
project
The SARA project: Surveillance of Antibiotic Resistance in Africa, an integrative project of the Pasteur Network
Read more05 Jul 2021
publication
Gastrointestinal carriage of Klebsiella pneumoniae in a general adult population: a cross-sectional study of risk factors and bacterial genomic diversity.
Read more01 Jul 2021
publication
A Point Prevalence Survey of Antibiotic Resistance in the Irish Environment, 2018-2019.
Read more24 Jun 2021
04 Jun 2021
17 May 2021
publication
Circulation of pertussis and poor protection against diphtheria among middle-aged adults in 18 European countries.
Read more19 Apr 2021
18 Feb 2021
publication
High-Resolution Typing of Staphylococcus epidermidis Based on Core Genome Multilocus Sequence Typing To Investigate the Hospital Spread of Multidrug-Resistant Clones.
Read more09 Feb 2021
publication
Genome of Superficieibacter maynardsmithii, a novel, antibiotic susceptible representative of Enterobacteriaceae.
Read more01 Jan 2021
publication
Incidence and severity of pertussis hospitalisations in infants aged less than 1 year in 37 hospitals of six EU/EEA countries, results of PERTINENT sentinel pilot surveillance system, December 2015 to December 2018.
Read more27 Nov 2020
publication
Population genomics and antimicrobial resistance in Corynebacterium diphtheriae.
Read more01 Nov 2020
publication
Elizabethkingia anophelis meningitis in a traveler returning from the Americas.
Read more23 Oct 2020
publication
Corynebacterium diphtheriae Infection in Mahajanga, Madagascar: First Case Report.
Read more02 Sep 2020
publication
Klebsiella pneumoniae carriage in low-income countries: antimicrobial resistance, genomic diversity and risk factors.
Read more13 Aug 2020
publication
Genomic background of the Klebsiella pneumoniae NDM-1 outbreak in Poland, 2012-18.
Read more01 Aug 2020
publication
Low Detection Rate of Bordetella pertussis Using the BioFire FilmArray Respiratory Panel 2plus.
Read more01 Aug 2020
publication
Community-acquired infection caused by the uncommon hypervirulent Klebsiella pneumoniae ST66-K2 lineage.
Read more22 Jul 2020
project
IS_MIRRI21 – Implementation and Sustainability of Microbial Resource Research Infrastructure for the 21st century
Read more03 Jul 2020
publication
Cutaneous ulcers revealing diphtheria: A re-emerging disease imported from Indian Ocean countries?
Read more01 Jul 2020
publication
Characterization of Klebsiella pneumoniae isolates from a mother-child cohort in Madagascar.
Read more29 Jun 2020
18 May 2020
18 Mar 2020
publication
The ZKIR Assay, a Real-Time PCR Method for the Detection of Klebsiella pneumoniae and Closely Related Species in Environmental Samples.
Read more28 Feb 2020
publication
Corynebacterium rouxii sp. nov., a novel member of the diphtheriae species complex.
Read more31 Jan 2020
publication
Core/Whole Genome Multilocus Sequence Typing and Core Genome SNP-Based Typing of OXA-48-Producing Klebsiella pneumoniae Clinical Isolates From Spain.
Read more27 Jan 2020
event
“Doing things differently: the evolution of Bordetella pertussis” Genomes and Genetics with Global Health Departments seminar
Read more26 Jan 2020
publication
Determining Factors for Pertussis Vaccination Policy: A Study in Five EU Countries
Read more29 Oct 2019
publication
Gene composition as a potential barrier to large recombinations in the bacterial pathogen Klebsiella pneumoniae
Read more05 Oct 2019
publication
Erratum to “Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.” [Res Microbiol 170 (3) (2019) 165-170].
Read more03 Oct 2019
publication
Genus-wide Yersinia core-genome multilocus sequence typing for species identification and strain characterization
Read more03 Sep 2019
01 Sep 2019
06 Aug 2019
publication
Author Correction: Hypervirulent Listeria monocytogenes clones’ adaptation to mammalian gut accounts for their association with dairy products.
Read more01 Aug 2019
01 Jul 2019
publication
An MLST approach to support tracking of plasmids carrying OXA-48-like carbapenemase.
Read more30 Jun 2019
publication
Detection of OXA-48-like-producing Enterobacterales in Irish recreational water
Read more18 Jun 2019
07 Jun 2019
06 Jun 2019
publication
Hypervirulent Listeria monocytogenes clones’ adaption to mammalian gut accounts for their association with dairy products.
Read more03 May 2019
publication
New Bacteriophages against Emerging Lineages ST23 and ST258 of Klebsiella pneumoniae and Efficacy Assessment in Galleria mellonella Larvae.
Read more03 May 2019
publication
Comparative Analysis of the Two Acinetobacter baumannii Multilocus Sequence Typing (MLST) Schemes.
Read more03 Apr 2019
01 Apr 2019
publication
Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance.
Read more07 Mar 2019
publication
Bordetella parapertussis Bacteremia: Clinical Expression and Bacterial Genomics.
Read more25 Feb 2019
publication
Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.
Read more01 Feb 2019
publication
LiSEQ – whole-genome sequencing of a cross-sectional survey of Listeria monocytogenes in ready-to-eat foods and human clinical cases in Europe.
Read more25 Jan 2019
project
KlebNet: a One Health network bridging science and surveillance on antimicrobial resistant Klebsiella
Read more20 Jan 2019
publication
Whole genome sequencing reveals resemblance between ESBL-producing and carbapenem resistant Klebsiella pneumoniae isolates from Austrian rivers and clinical isolates from hospitals
Read more01 Jan 2019
publication
Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov.
Read more21 Dec 2018
29 Oct 2018
publication
Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae
Read more22 Aug 2018
course
Bacterial strain nomenclatures applied to international epidemiological surveillance: A Theoretical and Hands-on Course
Read more09 Aug 2018
13 Jul 2018
publication
Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination
Read more09 Jul 2018
publication
Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations
Read more01 Jun 2018
publication
Genomic Sequencing of Bordetella pertussis for Epidemiology and Global Surveillance of Whooping Cough
Read more24 Apr 2018
publication
Outbreak of Invasive Wound Mucormycosis in a Burn Unit Due to Multiple Strains of Mucor circinelloides f. circinelloides Resolved by Whole-Genome Sequencing.
Read more30 Jan 2018
publication
Rhinoscleroma pathogenesis: The type K3 capsule of Klebsiella rhinoscleromatis is a virulence factor not involved in Mikulicz cells formation
Read more01 Jan 2018
publication
Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov.
Read more01 Jan 2018
publication
Identification of Klebsiella pneumoniae, Klebsiella quasipneumoniae, Klebsiella variicola and Related Phylogroups by MALDI-TOF Mass Spectrometry.
Read more05 Dec 2017
15 Nov 2017
publication
Molecular and epidemiological characterization of carbapenemase-producing Enterobacteriaceae in Norway, 2007 to 2014
Read more13 Nov 2017
publication
Genomic analysis of endemic clones of toxigenic and non-toxigenic Corynebacterium diphtheriae in Belarus during and after the major epidemic in 1990s
Read more02 Oct 2017
publication
Metagenomic assessment of the interplay between the environment and the genetic diversification of Acinetobacter
Read more01 Sep 2017
publication
Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter.
Read more23 Aug 2017
27 Jul 2017
publication
In-vivo loss of carbapenem resistance by extensively drug-resistant Klebsiella pneumoniae during treatment via porin expression modification
Read more11 Jul 2017
publication
Comparative genomic analysis of Acinetobacter strains isolated from murine colonic crypts
Read more04 Jul 2017
24 May 2017
news
Emerging diseases: a highly mutant strain of the Elizabethkingia bacterium caused an outbreak in Wisconsin
Read more24 May 2017
publication
Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain.
Read more26 Apr 2017
publication
Diversity, virulence, and antimicrobial resistance of the KPC-producing Klebsiella pneumoniae ST307 clone
Read more03 Mar 2017
publication
Metabolic diversity of the emerging pathogenic lineages of Klebsiella pneumoniae
Read more09 Jan 2017
publication
Diagnosis in France of a Non-Toxigenic tox Gene-Bearing Strain of Corynebacterium diphtheriae in a Young Male Back From Senegal.
Read more01 Jan 2017
07 Dec 2016
publication
Community-acquired meningitis caused by a CG86 hypervirulent Klebsiella pneumoniae strain: first case report in the Caribbean
Read more19 Nov 2016
19 Oct 2016
publication
Molecular Epidemiology of Colonizing and Infecting Isolates of Klebsiella pneumoniae
Read more10 Oct 2016
news
A population biology study of Listeria ushers in a new era in listeriosis surveillance
Read more03 Oct 2016
publication
Erratum: Global phylogeography and evolutionary history of Shigella dysenteriae type 1
Read more27 Jul 2016
publication
Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis
Read more12 May 2016
12 May 2016
01 Mar 2016
publication
Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity.
Read more01 Mar 2016
publication
Liver Abscess Caused by Infection with Community-Acquired Klebsiella quasipneumoniae subsp. quasipneumoniae
Read more17 Feb 2016
publication
Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications.
Read more01 Feb 2016
news
Listeria: identification of hypervirulent strains with placental and cerebral tropism
Read more15 Oct 2015
publication
Whole genome sequencing to investigate an outbreak of mucormycosis in a burn unit
Read more05 Oct 2015
01 Oct 2015
publication
Clonogrouping, a Rapid Multiplex PCR Method for Identification of Major Clones of Listeria monocytogenes.
Read more08 Sep 2015
01 Sep 2015
01 Sep 2015
31 Aug 2015
project
Genomic taxonomy of bacterial strains: universal nomenclatures for epidemiology and population biology
Read more31 Aug 2015
publication
Épidémie de mucormycose dans un centre de traitement des brûlés : des biomarqueurs diagnostiques au séquençage complets des souches
Read more27 Aug 2015
publication
Phylogenetic lineages, clones and β-lactamases in an international collection of Klebsiella oxytoca isolates non-susceptible to expanded-spectrum cephalosporins
Read more27 Jul 2015
27 Jul 2015
22 Jul 2015
project
Bioinformatics of genome sequencing applied to epidemiological surveillance of infectious agents
Read more01 Jul 2015
publication
Tracking Nosocomial Klebsiella pneumoniae Infections and Outbreaks by Whole-Genome Analysis: Small-Scale Italian Scenario within a Single Hospital
Read more22 Jun 2015
publication
Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health
Read more11 May 2015
01 May 2015
publication
Multilocus sequence analysis of the genus Citrobacter and description of Citrobacter pasteurii sp. nov.
Read more09 Mar 2015
publication
In silico analysis of usher encoding genes in Klebsiella pneumoniae and characterization of their role in adhesion and colonization
Read more28 Jan 2015
publication
Association of tellurite resistance with hypervirulent clonal groups of Klebsiella pneumoniae
Read more06 Jan 2015
publication
Acinetobacter seifertii sp. nov., a member of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex isolated from human clinical specimens
Read more29 Dec 2014
publication
Exploring the diversity of Listeria monocytogenes biofilm architecture by high-throughput confocal laser scanning microscopy and the predominance of the honeycomb-like morphotype
Read more17 Dec 2014
publication
Molecular epidemiology of carbapenem non-susceptible Acinetobacter baumannii in France
Read more26 Nov 2014
publication
Klebsiella variicola is a frequent cause of bloodstream infection in the stockholm area, and associated with higher mortality compared to K. pneumoniae
Read more10 Nov 2014
publication
Resequencing microarray technology for genotyping human papillomavirus in cervical smears
Read more01 Nov 2014
publication
Genomic definition of hypervirulent and multidrug-resistant Klebsiella pneumoniae clonal groups
Read more01 Oct 2014
publication
Multiplex PCR for detection of seven virulence factors and K1/K2 capsular serotypes of Klebsiella pneumoniae
Read more26 Sep 2014
publication
Development of a multiplex PCR assay for identification of Klebsiella pneumoniae hypervirulent clones of capsular serotype K2
Read more23 Sep 2014
publication
Leptospira mayottensis sp. nov., a pathogenic species of the genus Leptospira isolated from humans
Read more04 Sep 2014
publication
Differential contribution of AcrAB and OqxAB efflux pumps to multidrug resistance and virulence in Klebsiella pneumoniae
Read more01 Sep 2014
publication
Campylobacter coli cultured from the stools of a patient with immunoproliferative small intestinal disease.
Read more09 Jul 2014
publication
Characterization of Listeria monocytogenes strains isolated during 2011-2013 from human infections in Switzerland
Read more23 Jun 2014
publication
Description of Klebsiella quasipneumoniae sp. nov., isolated from human infections, with two subspecies, Klebsiella quasipneumoniae subsp. quasipneumoniae subsp. nov. and Klebsiella quasipneumoniae subsp. similipneumoniae subsp. nov., and demonstration that Klebsiella singaporensis is a junior heterotypic synonym of Klebsiella variicola
Read more13 May 2014
publication
AlienTrimmer removes adapter oligonucleotides with high sensitivity in short-insert paired-end reads. Commentary on Turner (2014) Assessment of insert sizes and adapter content in FASTQ data from NexteraXT libraries
Read more21 Apr 2014
publication
Complete nucleotide sequence of two multidrug-resistant IncR plasmids from Klebsiella pneumoniae
Read more25 Mar 2014
publication
Comparison of widely used Listeria monocytogenes strains EGD, 10403S, and EGD-e highlights genomic variations underlying differences in pathogenicity.
Read more14 Mar 2014
publication
Carbapenem-resistant Klebsiella pneumoniae exhibit variability in capsular polysaccharide and capsule associated virulence traits
Read more13 Mar 2014
publication
Draft Genome Sequence of Campylobacter coli Strain IPSID-1 Isolated from a Patient with Immunoproliferative Small Intestinal Disease.
Read more31 Jan 2014
publication
Microbial molecular markers and epidemiological surveillance in the era of high throughput sequencing: an update from the IMMEM-10 conference
Read more31 Dec 2013
02 Oct 2013
publication
wzi Gene sequencing, a rapid method for determination of capsular type for Klebsiella strains
Read more04 Sep 2013
publication
Different factors associated with CTX-M-producing ST131 and non-ST131 Escherichia coli clinical isolates
Read more01 Aug 2013
publication
AlienTrimmer: a tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads
Read more24 Jul 2013
publication
Deciphering bartonella diversity, recombination, and host specificity in a rodent community
Read more19 Jul 2013
publication
Lactobacillus paracasei comparative genomics: towards species pan-genome definition and exploitation of diversity
Read more18 Apr 2013
publication
Neutral genomic microevolution of a recently emerged pathogen, Salmonella enterica serovar Agona
Read more10 Apr 2013
publication
Characterization of an extended-spectrum class A β-lactamase from a novel enterobacterial species taxonomically related to Rahnella spp./Ewingella spp
Read more01 Apr 2013
publication
A novel murine model of rhinoscleroma identifies Mikulicz cells, the disease signature, as IL-10 dependent derivatives of inflammatory monocytes
Read more29 Jan 2013
publication
Development of variable number of tandem repeats typing schemes for Ralstonia solanacearum, the agent of bacterial wilt, banana Moko disease and potato brown rot
Read more24 Jan 2013
publication
From molecular to genomic epidemiology: transforming surveillance and control of infectious diseases
Read more06 Jan 2013
publication
Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis
Read more22 Oct 2012
publication
Complete nucleotide sequence of the first KPC-2- and SHV-12-encoding IncX plasmid, pKpS90, from Klebsiella pneumoniae
Read more05 Oct 2012
publication
Population genetic structure of 4,12:a:- Salmonella enterica strains from harbor porpoises
Read more04 Oct 2012
publication
The emergence of multidrug-resistant Klebsiella pneumoniae of international clones ST13, ST16, ST35, ST48 and ST101 in a teaching hospital in the Paris region
Read more25 Sep 2012
publication
Microbiological and clinical characteristics of bacteraemia caused by the hypermucoviscosity phenotype of Klebsiella pneumoniae in Korea
Read more11 Jul 2012
publication
Multilocus sequence typing analysis of Staphylococcus lugdunensis implies a clonal population structure
Read more03 Jul 2012
publication
Phylogenetic distribution of CTX-M- and non-extended-spectrum-β-lactamase-producing Escherichia coli isolates: group B2 isolates, except clone ST131, rarely produce CTX-M enzymes
Read more03 Jul 2012
publication
Primary liver abscess due to CC23-K1 virulent clone of Klebsiella pneumoniae in France
Read more28 Jun 2012
publication
Inter-hospital outbreak of Klebsiella pneumoniae producing KPC-2 carbapenemase in Ireland
Read more21 Jun 2012
publication
Multilocus sequence typing as a replacement for serotyping in Salmonella enterica
Read more18 Jun 2012
18 May 2012
publication
CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections
Read more07 May 2012
publication
Detection of OXA-48 carbapenemase in the pandemic clone Escherichia coli O25b:H4-ST131 in the course of investigation of an outbreak of OXA-48-producing Klebsiella pneumoniae
Read more05 Mar 2012
publication
Klebsiella pneumoniae resistant to third-generation cephalosporins in five African and two Vietnamese major towns: multiclonal population structure with two major international clonal groups, CG15 and CG258
Read more23 Jan 2012
publication
Severity of Escherichia coli bacteraemia is independent of the intrinsic virulence of the strains assessed in a mouse model
Read more07 Dec 2011
publication
Human leptospira isolates circulating in Mayotte (Indian Ocean) have unique serological and molecular features
Read more01 Sep 2011
publication
Evaluation of high-throughput sequencing for identifying known and unknown viruses in biological samples.
Read more17 Aug 2011
publication
Expansion of European vacA and cagA alleles to East-Asian Helicobacter pylori strains in Cambodia
Read more19 Jul 2011
publication
Evolutionary history of Helicobacter pylori sequences reflect past human migrations in Southeast Asia
Read more01 Jul 2011
publication
Clinical relevance of cagA and vacA gene polymorphisms in Helicobacter pylori isolates from Senegalese patients
Read more15 Jun 2011
publication
Emerging severe and fatal infections due to Klebsiella pneumoniae in two university hospitals in France
Read more08 Jun 2011
publication
Characterization of the cryptic Escherichia lineages: rapid identification and prevalence
Read more24 May 2011
publication
PCR-based identification of Klebsiella pneumoniae subsp. rhinoscleromatis, the agent of rhinoscleroma
Read more14 May 2011
publication
Characterization of the novel Listeria monocytogenes PCR serogrouping profile IVb-v1.
Read more29 Apr 2011
publication
Widespread carbapenem resistant Acinetobacter baumannii clones in Italian hospitals revealed by a multicenter study
Read more28 Apr 2011
01 Apr 2011
publication
Epidemiology of methicillin-susceptible Staphylococcus aureus lineages in five major African towns: high prevalence of Panton-Valentine leukocidin genes
Read more13 Feb 2011
publication
Animal and human pathogenic Escherichia coli strains share common genetic backgrounds
Read more12 Feb 2011
publication
Genotypic and phenotypic characterization of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex with the proposal of Acinetobacter pittii sp. nov. (formerly Acinetobacter genomic species 3) and Acinetobacter nosocomialis sp. nov. (formerly Acinetobacter genomic species 13TU)
Read more12 Feb 2011
publication
Rapid genotyping of Achromobacter xylosoxidans, Acinetobacter baumannii, Klebsiella pneumoniae, Pseudomonas aeruginosa and Stenotrophomonas maltophilia isolates using melting curve analysis of RAPD-generated DNA fragments (McRAPD)
Read more01 Feb 2011
publication
Molecular epidemiological investigation of multidrug-resistant Acinetobacter baumannii strains in four Mediterranean countries with a multilocus sequence typing scheme
Read more01 Feb 2011
publication
Epidemiology of methicillin-resistant Staphylococcus aureus lineages in five major African towns: emergence and spread of atypical clones
Read more01 Feb 2011
publication
Multilocus VNTR analysis of Mycobacterium ulcerans strains isolated in Côte d’Ivoire
Read more20 Dec 2010
publication
Reconstructed ancestral sequences improve pathogen identification using resequencing DNA microarrays
Read more09 Nov 2010
publication
High prevalence of the arginine catabolic mobile element in carriage isolates of methicillin-resistant Staphylococcus epidermidis
Read more08 Oct 2010
15 Sep 2010
publication
Multilocus microsatellite markers for molecular typing of Candida glabrata: application to analysis of genetic relationships between bloodstream and digestive system isolates
Read more01 May 2010
publication
Population genetic structure of Anopheles gambiae and Anopheles arabiensis in Niger
Read more07 Apr 2010
publication
The population structure of Acinetobacter baumannii: expanding multiresistant clones from an ancestral susceptible genetic pool
Read more24 Feb 2010
publication
Molecular epidemiology of multidrug-resistant Acinetobacter baumannii in a tertiary care hospital in Naples, Italy, shows the emergence of a novel epidemic clone
Read more11 Jan 2010
publication
Species delineation and clonal diversity in four Bifidobacterium species as revealed by multilocus sequencing
Read more30 Sep 2009
publication
First neisseria gonorrhoeae genotyping analysis in france: identification of a strain cluster with reduced susceptibility to Ceftriaxone
Read more21 Sep 2009
publication
Molecular epidemiology of extended-spectrum beta-lactamase-producing Klebsiella pneumoniae strains in a university hospital in Tunis, Tunisia, 1999-2005
Read more25 Mar 2009
publication
Virulent clones of Klebsiella pneumoniae: identification and evolutionary scenario based on genomic and phenotypic characterization
Read more04 Mar 2009
publication
Aedes albopictus mosquito: the main vector of the 2007 Chikungunya outbreak in Gabon
Read more01 Feb 2009
publication
Polyphasic characterization of xanthomonads pathogenic to members of the Anacardiaceae and their relatedness to species of Xanthomonas
Read more16 Jan 2009
publication
Uneven distribution of mating types among genotypes of Candida glabrata isolates from clinical samples
Read more16 Dec 2008
publication
From local surveys to global surveillance: three high-throughput genotyping methods for epidemiological monitoring of Xanthomonas citri pv. citri pathotypes
Read more03 Dec 2008
publication
Phylogeny and identification of Pantoea species and typing of Pantoea agglomerans strains by multilocus gene sequencing
Read more26 Nov 2008
publication
Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains
Read more06 Oct 2008
publication
Development of 14 minisatellite markers for the citrus canker bacterium, Xanthomonas citri pv. citri
Read more01 Oct 2008
publication
Comparison of PFGE and multilocus sequence typing for analysis of Klebsiella pneumoniae isolates
Read more19 Sep 2008
05 Sep 2008
13 May 2008
publication
Emergence of carbapenem resistance in Acinetobacter baumannii in the Czech Republic is associated with the spread of multidrug-resistant strains of European clone II
Read more08 May 2008
publication
MLVA-NET–a standardised web database for bacterial genotyping and surveillance
Read more24 Dec 2007
publication
Comparative phylogenies of Burkholderia, Ralstonia, Comamonas, Brevundimonas and related organisms derived from rpoB, gyrB and rrs gene sequences
Read more01 Oct 2007
publication
Guidelines for the validation and application of typing methods for use in bacterial epidemiology
Read more17 Aug 2007
publication
Multilocus sequence typing of Lactobacillus casei reveals a clonal population structure with low levels of homologous recombination
Read more10 Aug 2007
publication
Recombining population structure of Plesiomonas shigelloides (Enterobacteriaceae) revealed by multilocus sequence typing
Read more21 Jun 2007
01 May 2007
publication
[Evolutionary history of Salmonella Typhi illustrates a new pattern of epidemiologic dynamics]
Read more24 Nov 2006
01 Sep 2006
01 Aug 2006
publication
Identification of Acinetobacter species and genotyping of Acinetobacter baumannii by multilocus PCR and mass spectrometry
Read more23 May 2006
publication
Genome microevolution of chikungunya viruses causing the Indian Ocean outbreak
Read more01 Dec 2005
publication
Variants of the Klebsiella pneumoniae OKP chromosomal beta-lactamase are divided into two main groups, OKP-A and OKP-B
Read more01 Nov 2005
01 Sep 2005
publication
Regional occurrence of plasmid-mediated carbapenem-hydrolyzing oxacillinase OXA-58 in Acinetobacter spp. in Europe
Read more01 Sep 2005
publication
Repetitive-DNA-element PCR fingerprinting and antibiotic resistance of pan-European multi-resistant Acinetobacter baumannii clone III strains
Read more19 Aug 2005
publication
Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis
Read more01 Aug 2005
01 Aug 2005
publication
Six groups of the OXY beta-Lactamase evolved over millions of years in Klebsiella oxytoca
Read more01 Mar 2005
publication
Identification of coagulase-negative staphylococci other than Staphylococcus epidermidis by automated ribotyping
Read more22 Jan 2005
publication
Identification and antimicrobial susceptibility of 100 Klebsiella animal clinical isolates
Read more01 Dec 2004
publication
Diversity of aminoglycoside-resistance genes and their association with class 1 integrons among strains of pan-European Acinetobacter baumannii clones
Read more01 Oct 2004
publication
Species distribution and ribotype diversity of Burkholderia cepacia complex isolates from French patients with cystic fibrosis
Read more01 Oct 2004
publication
Development of a rapid identification method for Klebsiella pneumoniae phylogenetic groups and analysis of 420 clinical isolates
Read more01 Aug 2004
publication
Molecular serotyping of Klebsiella species isolates by restriction of the amplified capsular antigen gene cluster
Read more01 Jul 2004
publication
Diversity and evolution of the class A chromosomal beta-lactamase gene in Klebsiella pneumoniae
Read more01 Mar 2004
publication
Identification of a new geographically widespread multiresistant Acinetobacter baumannii clone from European hospitals
Read more01 Jan 2004
publication
Discrimination of Klebsiella pneumoniae and Klebsiella oxytoca phylogenetic groups and other Klebsiella species by use of amplified fragment length polymorphism
Read more01 Nov 2003
publication
Evaluation of the polymorphisms associated with tandem repeats for Pseudomonas aeruginosa strain typing
Read more01 Oct 2003
publication
Identification of Klebsiella oxytoca using a specific PCR assay targeting the polygalacturonase pehX gene
Read more13 Aug 2003
publication
Occurrence and spread of SHV extended-spectrum beta-lactamase-producing Klebsiella pneumoniae isolates in Curacao
Read more01 Feb 2003
publication
Phylogenetic diversity of bat trypanosomes of subgenus Schizotrypanum based on multilocus enzyme electrophoresis, random amplified polymorphic DNA, and cytochrome b nucleotide sequence analyses
Read more01 Feb 2003
publication
Evidence for genetic exchange and hybridization in Trypanosoma cruzi based on nucleotide sequences and molecular karyotype
Read more01 Nov 2002
01 Oct 2002
publication
Evaluation of the Etest ESBL and the BD Phoenix, VITEK 1, and VITEK 2 automated instruments for detection of extended-spectrum beta-lactamases in multiresistant Escherichia coli and Klebsiella spp
Read more01 Jun 2002
publication
Outbreak of a susceptible strain of Acinetobacter species 13 (sensu Tjernberg and Ursing) in an adult neurosurgical intensive care unit
Read more01 Jun 2002
01 May 2002
publication
Comparative evaluation of the BD Phoenix and VITEK 2 automated instruments for identification of isolates of the Burkholderia cepacia complex
Read more01 Mar 2002
publication
Chromosomal size variation in Trypanosoma cruzi is mainly progressive and is evolutionarily informative
Read more01 Sep 2001
publication
Characterisation of large and small subunit rRNA and mini-exon genes further supports the distinction of six Trypanosoma cruzi lineages
Read more01 Jul 2001
26 May 2001
01 May 2001
publication
Phylogenetic diversity of Klebsiella pneumoniae and Klebsiella oxytoca clinical isolates revealed by randomly amplified polymorphic DNA, gyrA and parC genes sequencing and automated ribotyping
Read more01 Nov 2000
publication
Identification of six Trypanosoma cruzi lineages by sequence-characterised amplified region markers
Read more01 Nov 2000
publication
Molecular epidemiology of penicillin-resistant Streptococcus pneumoniae colonizing children with community-acquired pneumonia and children attending day-care centres in Fortaleza, Brazil
Read more01 Oct 2000
publication
Molecular surveillance of European quinolone-resistant clinical isolates of Pseudomonas aeruginosa and Acinetobacter spp. using automated ribotyping
Read more01 Jul 2000
publication
Genomic rearrangements in trypanosomatids: an alternative to the “one gene” evolutionary hypotheses?
Read more01 Jul 2000
publication
In vitro potency of moxifloxacin, clinafloxacin and sitafloxacin against 248 genetically defined clinical isolates of Staphylococcus aureus
Read more01 May 2000
publication
Population structure and genetic typing of Trypanosoma cruzi, the agent of Chagas disease: a multilocus enzyme electrophoresis approach
Read more01 May 2000
publication
Distinguishing species of the Burkholderia cepacia complex and Burkholderia gladioli by automated ribotyping
Read more01 Apr 2000
publication
In vitro activities of sitafloxacin (DU-6859a) and six other fluoroquinolones against 8,796 clinical bacterial isolates
Read more01 Jan 2000
publication
Epidemiology of quinolone resistance of Klebsiella pneumoniae and Klebsiella oxytoca in Europe
Read more01 Jan 2000
publication
Identification of six Trypanosoma cruzi phylogenetic lineages by random amplified polymorphic DNA and multilocus enzyme electrophoresis
Read more01 Dec 1999
publication
Molecular epidemiology of quinolone resistance and comparative in vitro activities of new quinolones against European Staphylococcus aureus isolates
Read more01 Oct 1999
publication
Association of alterations in ParC and GyrA proteins with resistance of clinical isolates of Enterococcus faecium to nine different fluoroquinolones
Read more01 Aug 1999
publication
Comparative in vitro activities of ciprofloxacin, clinafloxacin, gatifloxacin, levofloxacin, moxifloxacin, and trovafloxacin against Klebsiella pneumoniae, Klebsiella oxytoca, Enterobacter cloacae, and Enterobacter aerogenes clinical isolates with alterations in GyrA and ParC proteins
Read more01 Jan 1999
publication
A phylogenetic analysis by multilocus enzyme electrophoresis and multiprimer random amplified polymorphic DNA fingerprinting of the Leishmania genome project Friedlin reference strain
Read more01 May 1998
publication
A phylogenetic analysis of the Trypanosoma cruzi genome project CL Brener reference strain by multilocus enzyme electrophoresis and multiprimer random amplified polymorphic DNA fingerprinting
Read more01 May 1998