Ligne de temps
Sylvain Brisse
Responsable de Structure
18 mars 2024
publication
Corynebacterium diphtheriae and Corynebacterium ulcerans : development of EUCAST methods and generation of data on which to determine breakpoints
Lire plus20 janv. 2024
project
The GenEpi-BioTrain programme: Interdisciplinary training in genomic epidemiology and public health bioinformatics
Lire plus01 nov. 2023
publication
Multidrug-resistant Corynebacterium diphtheriae in people with travel history from West Africa to France, March to September 2023.
Lire plus31 août 2023
publication
A global Corynebacterium diphtheriae genomic framework sheds light on current diphtheria reemergence
Lire plus10 août 2023
publication
Corynebacterium ramonii sp. nov., a novel toxigenic member of the Corynebacterium diphtheriae species complex.
Lire plus01 août 2023
publication
Emerging Corynebacterium diphtheriae Species Complex Infections, Réunion Island, France, 2015-2020.
Lire plus06 juil. 2023
publication
Genomic features of Klebsiella isolates from artisanal ready-to-eat food production facilities.
Lire plus20 juin 2023
publication
Phages against Noncapsulated Klebsiella pneumoniae: Broader Host range, Slower Resistance.
Lire plus01 mai 2023
publication
Biological differences between FIM2 and FIM3 fimbriae of Bordetella pertussis: not just the serotype
Lire plus27 avr. 2023
12 avr. 2023
06 avr. 2023
publication
Corynebacteria of the diphtheriae Species Complex in Companion Animals: Clinical and Microbiological Characterization of 64 Cases from France.
Lire plus29 mars 2023
publication
Defining genomic epidemiology thresholds for common-source bacterial outbreaks: a modelling study.
Lire plus15 mars 2023
project
PERT-SEVERE II – Impact de l’expression bactérienne et de la réponse immunitaire dans la gravité de la coqueluche
Lire plus01 févr. 2023
publication
Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae.
Lire plus01 janv. 2023
publication
Multidrug-resistant toxigenic Corynebacterium diphtheriae sublineage 453 with two novel resistance genomic islands.
Lire plus01 déc. 2022
publication
A large-scale genomic snapshot of Klebsiella spp. isolates in Northern Italy reveals limited transmission between clinical and non-clinical settings.
Lire plus24 nov. 2022
15 oct. 2022
project
PER-SEVERE : Définir la contribution des facteurs microbiens et de l’immunité de l’hôte à la gravité de la coqueluche
Lire plus20 sept. 2022
publication
Detection of Klebsiella pneumoniae human gut carriage: a comparison of culture, qPCR, and whole metagenomic sequencing methods.
Lire plus12 sept. 2022
publication
Limited Transmission of Klebsiella pneumoniae among Humans, Animals, and the Environment in a Caribbean Island, Guadeloupe (French West Indies).
Lire plus11 juil. 2022
01 juil. 2022
publication
A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies.
Lire plus30 juin 2022
14 juin 2022
publication
A dual barcoding approach to bacterial strain nomenclature: Genomic taxonomy of Klebsiella pneumoniae strains
Lire plus01 juin 2022
publication
Association between the COVID-19 pandemic and pertussis derived from multiple nationwide data sources, France, 2013 to 2020.
Lire plus19 mai 2022
publication
Transmission of Klebsiella strains and plasmids within and between grey-headed flying fox colonies.
Lire plus17 mai 2022
publication
In Vitro and In Vivo Assessments of Two Newly Isolated Bacteriophages against an ST13 Urinary Tract Infection Klebsiella pneumoniae.
Lire plus27 avr. 2022
publication
Global spatial dynamics and vaccine-induced fitness changes of Bordetella pertussis.
Lire plus27 avr. 2022
publication
Characterization of Klebsiella pneumoniae isolated from patients suspected of pulmonary or bubonic plague during the Madagascar epidemic in 2017.
Lire plus01 avr. 2022
publication
Pertussis surveillance results from a French general practitioner network, France, 2017 to 2020.
Lire plus26 mars 2022
publication
In vitro and in silico parameters for precise cgMLST typing of Listeria monocytogenes.
Lire plus11 mars 2022
publication
A curated collection of Klebsiella metabolic models reveals variable substrate usage and gene essentiality.
Lire plus23 févr. 2022
publication
Multilateral benefit-sharing from digital sequence information will support both science and biodiversity conservation.
Lire plus11 févr. 2022
publication
Klebsiella MALDI TypeR: a web-based tool for Klebsiella identification based on MALDI-TOF mass spectrometry.
Lire plus01 janv. 2022
publication
Genomic evolution of the globally disseminated multidrug-resistant Klebsiella pneumoniae clonal group 147.
Lire plus03 déc. 2021
publication
Emergence and global spread of Listeria monocytogenes main clinical clonal complex.
Lire plus18 nov. 2021
publication
Cutaneous diphtheria: 3 case-reports to discuss determinants of re-emergence in resource-rich settings.
Lire plus09 nov. 2021
publication
Spontaneous and post-surgical/traumatic Klebsiella pneumoniae meningitis: two distinct clinic-microbiological entities.
Lire plus29 oct. 2021
18 oct. 2021
publication
Effect of change in vaccine schedule on pertussis epidemiology in France: a modelling and serological study.
Lire plus15 sept. 2021
01 sept. 2021
publication
Evolution of Bordetella pertussis over a 23-year period in France, 1996 to 2018.
Lire plus01 août 2021
publication
Ongoing diphtheria outbreak in Yemen: a cross-sectional and genomic epidemiology study.
Lire plus09 juil. 2021
09 juil. 2021
05 juil. 2021
project
The SARA project: Surveillance of Antibiotic Resistance in Africa, an integrative project of the Pasteur Network
Lire plus05 juil. 2021
publication
Gastrointestinal carriage of Klebsiella pneumoniae in a general adult population: a cross-sectional study of risk factors and bacterial genomic diversity.
Lire plus01 juil. 2021
publication
A Point Prevalence Survey of Antibiotic Resistance in the Irish Environment, 2018-2019.
Lire plus24 juin 2021
04 juin 2021
17 mai 2021
publication
Circulation of pertussis and poor protection against diphtheria among middle-aged adults in 18 European countries.
Lire plus19 avr. 2021
18 févr. 2021
publication
High-Resolution Typing of Staphylococcus epidermidis Based on Core Genome Multilocus Sequence Typing To Investigate the Hospital Spread of Multidrug-Resistant Clones.
Lire plus09 févr. 2021
publication
Genome of Superficieibacter maynardsmithii, a novel, antibiotic susceptible representative of Enterobacteriaceae.
Lire plus01 janv. 2021
publication
Incidence and severity of pertussis hospitalisations in infants aged less than 1 year in 37 hospitals of six EU/EEA countries, results of PERTINENT sentinel pilot surveillance system, December 2015 to December 2018.
Lire plus27 nov. 2020
publication
Population genomics and antimicrobial resistance in Corynebacterium diphtheriae.
Lire plus01 nov. 2020
publication
Elizabethkingia anophelis meningitis in a traveler returning from the Americas.
Lire plus23 oct. 2020
publication
Corynebacterium diphtheriae Infection in Mahajanga, Madagascar: First Case Report.
Lire plus02 sept. 2020
publication
Klebsiella pneumoniae carriage in low-income countries: antimicrobial resistance, genomic diversity and risk factors.
Lire plus13 août 2020
publication
Genomic background of the Klebsiella pneumoniae NDM-1 outbreak in Poland, 2012-18.
Lire plus01 août 2020
publication
Low Detection Rate of Bordetella pertussis Using the BioFire FilmArray Respiratory Panel 2plus.
Lire plus01 août 2020
publication
Community-acquired infection caused by the uncommon hypervirulent Klebsiella pneumoniae ST66-K2 lineage.
Lire plus22 juil. 2020
project
IS_MIRRI21 – Implementation and Sustainability of Microbial Resource Research Infrastructure for the 21st century
Lire plus03 juil. 2020
publication
Cutaneous ulcers revealing diphtheria: A re-emerging disease imported from Indian Ocean countries?
Lire plus01 juil. 2020
publication
Characterization of Klebsiella pneumoniae isolates from a mother-child cohort in Madagascar.
Lire plus29 juin 2020
18 mai 2020
18 mars 2020
publication
The ZKIR Assay, a Real-Time PCR Method for the Detection of Klebsiella pneumoniae and Closely Related Species in Environmental Samples.
Lire plus28 févr. 2020
publication
Corynebacterium rouxii sp. nov., a novel member of the diphtheriae species complex.
Lire plus31 janv. 2020
publication
Core/Whole Genome Multilocus Sequence Typing and Core Genome SNP-Based Typing of OXA-48-Producing Klebsiella pneumoniae Clinical Isolates From Spain.
Lire plus27 janv. 2020
event
“Doing things differently: the evolution of Bordetella pertussis” Genomes and Genetics with Global Health Departments seminar
Lire plus26 janv. 2020
publication
Determining Factors for Pertussis Vaccination Policy: A Study in Five EU Countries
Lire plus29 oct. 2019
publication
Gene composition as a potential barrier to large recombinations in the bacterial pathogen Klebsiella pneumoniae
Lire plus05 oct. 2019
publication
Erratum to “Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.” [Res Microbiol 170 (3) (2019) 165-170].
Lire plus03 oct. 2019
publication
Genus-wide Yersinia core-genome multilocus sequence typing for species identification and strain characterization
Lire plus03 sept. 2019
01 sept. 2019
06 août 2019
publication
Author Correction: Hypervirulent Listeria monocytogenes clones’ adaptation to mammalian gut accounts for their association with dairy products.
Lire plus01 août 2019
01 juil. 2019
publication
An MLST approach to support tracking of plasmids carrying OXA-48-like carbapenemase.
Lire plus30 juin 2019
publication
Detection of OXA-48-like-producing Enterobacterales in Irish recreational water
Lire plus18 juin 2019
07 juin 2019
06 juin 2019
publication
Hypervirulent Listeria monocytogenes clones’ adaption to mammalian gut accounts for their association with dairy products.
Lire plus03 mai 2019
publication
New Bacteriophages against Emerging Lineages ST23 and ST258 of Klebsiella pneumoniae and Efficacy Assessment in Galleria mellonella Larvae.
Lire plus03 mai 2019
publication
Comparative Analysis of the Two Acinetobacter baumannii Multilocus Sequence Typing (MLST) Schemes.
Lire plus03 avr. 2019
01 avr. 2019
publication
Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance.
Lire plus07 mars 2019
publication
Bordetella parapertussis Bacteremia: Clinical Expression and Bacterial Genomics.
Lire plus25 févr. 2019
publication
Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.
Lire plus01 févr. 2019
publication
LiSEQ – whole-genome sequencing of a cross-sectional survey of Listeria monocytogenes in ready-to-eat foods and human clinical cases in Europe.
Lire plus25 janv. 2019
project
KlebNet: a One Health network bridging science and surveillance on antimicrobial resistant Klebsiella
Lire plus20 janv. 2019
publication
Whole genome sequencing reveals resemblance between ESBL-producing and carbapenem resistant Klebsiella pneumoniae isolates from Austrian rivers and clinical isolates from hospitals
Lire plus01 janv. 2019
publication
Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov.
Lire plus21 déc. 2018
29 oct. 2018
publication
Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae
Lire plus22 août 2018
course
Bacterial strain nomenclatures applied to international epidemiological surveillance: A Theoretical and Hands-on Course
Lire plus09 août 2018
13 juil. 2018
publication
Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination
Lire plus09 juil. 2018
publication
Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations
Lire plus01 juin 2018
publication
Genomic Sequencing of Bordetella pertussis for Epidemiology and Global Surveillance of Whooping Cough
Lire plus24 avr. 2018
publication
Outbreak of Invasive Wound Mucormycosis in a Burn Unit Due to Multiple Strains of Mucor circinelloides f. circinelloides Resolved by Whole-Genome Sequencing.
Lire plus30 janv. 2018
publication
Rhinoscleroma pathogenesis: The type K3 capsule of Klebsiella rhinoscleromatis is a virulence factor not involved in Mikulicz cells formation
Lire plus01 janv. 2018
publication
Identification of Klebsiella pneumoniae, Klebsiella quasipneumoniae, Klebsiella variicola and Related Phylogroups by MALDI-TOF Mass Spectrometry.
Lire plus01 janv. 2018
publication
Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov.
Lire plus05 déc. 2017
15 nov. 2017
publication
Molecular and epidemiological characterization of carbapenemase-producing Enterobacteriaceae in Norway, 2007 to 2014
Lire plus13 nov. 2017
publication
Genomic analysis of endemic clones of toxigenic and non-toxigenic Corynebacterium diphtheriae in Belarus during and after the major epidemic in 1990s
Lire plus02 oct. 2017
publication
Metagenomic assessment of the interplay between the environment and the genetic diversification of Acinetobacter
Lire plus01 sept. 2017
publication
Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter.
Lire plus23 août 2017
27 juil. 2017
publication
In-vivo loss of carbapenem resistance by extensively drug-resistant Klebsiella pneumoniae during treatment via porin expression modification
Lire plus11 juil. 2017
publication
Comparative genomic analysis of Acinetobacter strains isolated from murine colonic crypts
Lire plus04 juil. 2017
24 mai 2017
news
Emerging diseases: a highly mutant strain of the Elizabethkingia bacterium caused an outbreak in Wisconsin
Lire plus24 mai 2017
publication
Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain.
Lire plus26 avr. 2017
publication
Diversity, virulence, and antimicrobial resistance of the KPC-producing Klebsiella pneumoniae ST307 clone
Lire plus03 mars 2017
publication
Metabolic diversity of the emerging pathogenic lineages of Klebsiella pneumoniae
Lire plus09 janv. 2017
publication
Diagnosis in France of a Non-Toxigenic tox Gene-Bearing Strain of Corynebacterium diphtheriae in a Young Male Back From Senegal.
Lire plus01 janv. 2017
07 déc. 2016
publication
Community-acquired meningitis caused by a CG86 hypervirulent Klebsiella pneumoniae strain: first case report in the Caribbean
Lire plus19 nov. 2016
19 oct. 2016
publication
Molecular Epidemiology of Colonizing and Infecting Isolates of Klebsiella pneumoniae
Lire plus10 oct. 2016
news
A population biology study of Listeria ushers in a new era in listeriosis surveillance
Lire plus03 oct. 2016
publication
Erratum: Global phylogeography and evolutionary history of Shigella dysenteriae type 1
Lire plus27 juil. 2016
publication
Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis
Lire plus12 mai 2016
12 mai 2016
01 mars 2016
publication
Liver Abscess Caused by Infection with Community-Acquired Klebsiella quasipneumoniae subsp. quasipneumoniae
Lire plus01 mars 2016
publication
Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity.
Lire plus17 févr. 2016
publication
Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications
Lire plus01 févr. 2016
news
Listeria: identification of hypervirulent strains with placental and cerebral tropism
Lire plus15 oct. 2015
publication
Whole genome sequencing to investigate an outbreak of mucormycosis in a burn unit
Lire plus05 oct. 2015
01 oct. 2015
publication
Clonogrouping, a Rapid Multiplex PCR Method for Identification of Major Clones of Listeria monocytogenes.
Lire plus08 sept. 2015
01 sept. 2015
01 sept. 2015
31 août 2015
project
Genomic taxonomy of bacterial strains: universal nomenclatures for epidemiology and population biology
Lire plus31 août 2015
publication
Épidémie de mucormycose dans un centre de traitement des brûlés : des biomarqueurs diagnostiques au séquençage complets des souches
Lire plus27 août 2015
publication
Phylogenetic lineages, clones and β-lactamases in an international collection of Klebsiella oxytoca isolates non-susceptible to expanded-spectrum cephalosporins
Lire plus27 juil. 2015
27 juil. 2015
22 juil. 2015
project
Bioinformatics of genome sequencing applied to epidemiological surveillance of infectious agents
Lire plus01 juil. 2015
publication
Tracking Nosocomial Klebsiella pneumoniae Infections and Outbreaks by Whole-Genome Analysis: Small-Scale Italian Scenario within a Single Hospital
Lire plus22 juin 2015
publication
Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health
Lire plus11 mai 2015
01 mai 2015
publication
Multilocus sequence analysis of the genus Citrobacter and description of Citrobacter pasteurii sp. nov.
Lire plus09 mars 2015
publication
In silico analysis of usher encoding genes in Klebsiella pneumoniae and characterization of their role in adhesion and colonization
Lire plus28 janv. 2015
publication
Association of tellurite resistance with hypervirulent clonal groups of Klebsiella pneumoniae
Lire plus06 janv. 2015
publication
Acinetobacter seifertii sp. nov., a member of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex isolated from human clinical specimens
Lire plus29 déc. 2014
publication
Exploring the diversity of Listeria monocytogenes biofilm architecture by high-throughput confocal laser scanning microscopy and the predominance of the honeycomb-like morphotype
Lire plus17 déc. 2014
publication
Molecular epidemiology of carbapenem non-susceptible Acinetobacter baumannii in France
Lire plus26 nov. 2014
publication
Klebsiella variicola is a frequent cause of bloodstream infection in the stockholm area, and associated with higher mortality compared to K. pneumoniae
Lire plus10 nov. 2014
publication
Resequencing microarray technology for genotyping human papillomavirus in cervical smears
Lire plus01 nov. 2014
publication
Genomic definition of hypervirulent and multidrug-resistant Klebsiella pneumoniae clonal groups
Lire plus01 oct. 2014
publication
Multiplex PCR for detection of seven virulence factors and K1/K2 capsular serotypes of Klebsiella pneumoniae
Lire plus26 sept. 2014
publication
Development of a multiplex PCR assay for identification of Klebsiella pneumoniae hypervirulent clones of capsular serotype K2
Lire plus23 sept. 2014
publication
Leptospira mayottensis sp. nov., a pathogenic species of the genus Leptospira isolated from humans
Lire plus04 sept. 2014
publication
Differential contribution of AcrAB and OqxAB efflux pumps to multidrug resistance and virulence in Klebsiella pneumoniae
Lire plus01 sept. 2014
publication
Campylobacter coli cultured from the stools of a patient with immunoproliferative small intestinal disease.
Lire plus09 juil. 2014
publication
Characterization of Listeria monocytogenes strains isolated during 2011-2013 from human infections in Switzerland
Lire plus23 juin 2014
publication
Description of Klebsiella quasipneumoniae sp. nov., isolated from human infections, with two subspecies, Klebsiella quasipneumoniae subsp. quasipneumoniae subsp. nov. and Klebsiella quasipneumoniae subsp. similipneumoniae subsp. nov., and demonstration that Klebsiella singaporensis is a junior heterotypic synonym of Klebsiella variicola
Lire plus13 mai 2014
publication
AlienTrimmer removes adapter oligonucleotides with high sensitivity in short-insert paired-end reads. Commentary on Turner (2014) Assessment of insert sizes and adapter content in FASTQ data from NexteraXT libraries
Lire plus21 avr. 2014
publication
Complete nucleotide sequence of two multidrug-resistant IncR plasmids from Klebsiella pneumoniae
Lire plus25 mars 2014
publication
Comparison of widely used Listeria monocytogenes strains EGD, 10403S, and EGD-e highlights genomic variations underlying differences in pathogenicity.
Lire plus14 mars 2014
publication
Carbapenem-resistant Klebsiella pneumoniae exhibit variability in capsular polysaccharide and capsule associated virulence traits
Lire plus13 mars 2014
publication
Draft Genome Sequence of Campylobacter coli Strain IPSID-1 Isolated from a Patient with Immunoproliferative Small Intestinal Disease.
Lire plus31 janv. 2014
publication
Microbial molecular markers and epidemiological surveillance in the era of high throughput sequencing: an update from the IMMEM-10 conference
Lire plus31 déc. 2013
02 oct. 2013
publication
wzi Gene sequencing, a rapid method for determination of capsular type for Klebsiella strains
Lire plus04 sept. 2013
publication
Different factors associated with CTX-M-producing ST131 and non-ST131 Escherichia coli clinical isolates
Lire plus01 août 2013
publication
AlienTrimmer: a tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads
Lire plus24 juil. 2013
publication
Deciphering bartonella diversity, recombination, and host specificity in a rodent community
Lire plus19 juil. 2013
publication
Lactobacillus paracasei comparative genomics: towards species pan-genome definition and exploitation of diversity
Lire plus18 avr. 2013
publication
Neutral genomic microevolution of a recently emerged pathogen, Salmonella enterica serovar Agona
Lire plus10 avr. 2013
publication
Characterization of an extended-spectrum class A β-lactamase from a novel enterobacterial species taxonomically related to Rahnella spp./Ewingella spp
Lire plus01 avr. 2013
publication
A novel murine model of rhinoscleroma identifies Mikulicz cells, the disease signature, as IL-10 dependent derivatives of inflammatory monocytes
Lire plus29 janv. 2013
publication
Development of variable number of tandem repeats typing schemes for Ralstonia solanacearum, the agent of bacterial wilt, banana Moko disease and potato brown rot
Lire plus24 janv. 2013
publication
From molecular to genomic epidemiology: transforming surveillance and control of infectious diseases
Lire plus06 janv. 2013
publication
Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis
Lire plus22 oct. 2012
publication
Complete nucleotide sequence of the first KPC-2- and SHV-12-encoding IncX plasmid, pKpS90, from Klebsiella pneumoniae
Lire plus05 oct. 2012
publication
Population genetic structure of 4,12:a:- Salmonella enterica strains from harbor porpoises
Lire plus04 oct. 2012
publication
The emergence of multidrug-resistant Klebsiella pneumoniae of international clones ST13, ST16, ST35, ST48 and ST101 in a teaching hospital in the Paris region
Lire plus25 sept. 2012
publication
Microbiological and clinical characteristics of bacteraemia caused by the hypermucoviscosity phenotype of Klebsiella pneumoniae in Korea
Lire plus11 juil. 2012
publication
Multilocus sequence typing analysis of Staphylococcus lugdunensis implies a clonal population structure
Lire plus03 juil. 2012
publication
Phylogenetic distribution of CTX-M- and non-extended-spectrum-β-lactamase-producing Escherichia coli isolates: group B2 isolates, except clone ST131, rarely produce CTX-M enzymes
Lire plus03 juil. 2012
publication
Primary liver abscess due to CC23-K1 virulent clone of Klebsiella pneumoniae in France
Lire plus28 juin 2012
publication
Inter-hospital outbreak of Klebsiella pneumoniae producing KPC-2 carbapenemase in Ireland
Lire plus21 juin 2012
publication
Multilocus sequence typing as a replacement for serotyping in Salmonella enterica
Lire plus18 juin 2012
18 mai 2012
publication
CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections
Lire plus07 mai 2012
publication
Detection of OXA-48 carbapenemase in the pandemic clone Escherichia coli O25b:H4-ST131 in the course of investigation of an outbreak of OXA-48-producing Klebsiella pneumoniae
Lire plus05 mars 2012
publication
Klebsiella pneumoniae resistant to third-generation cephalosporins in five African and two Vietnamese major towns: multiclonal population structure with two major international clonal groups, CG15 and CG258
Lire plus23 janv. 2012
publication
Severity of Escherichia coli bacteraemia is independent of the intrinsic virulence of the strains assessed in a mouse model
Lire plus07 déc. 2011
publication
Human leptospira isolates circulating in Mayotte (Indian Ocean) have unique serological and molecular features
Lire plus01 sept. 2011
publication
Evaluation of high-throughput sequencing for identifying known and unknown viruses in biological samples.
Lire plus17 août 2011
publication
Expansion of European vacA and cagA alleles to East-Asian Helicobacter pylori strains in Cambodia
Lire plus19 juil. 2011
publication
Evolutionary history of Helicobacter pylori sequences reflect past human migrations in Southeast Asia
Lire plus01 juil. 2011
publication
Clinical relevance of cagA and vacA gene polymorphisms in Helicobacter pylori isolates from Senegalese patients
Lire plus15 juin 2011
publication
Emerging severe and fatal infections due to Klebsiella pneumoniae in two university hospitals in France
Lire plus08 juin 2011
publication
Characterization of the cryptic Escherichia lineages: rapid identification and prevalence
Lire plus24 mai 2011
publication
PCR-based identification of Klebsiella pneumoniae subsp. rhinoscleromatis, the agent of rhinoscleroma
Lire plus14 mai 2011
publication
Characterization of the novel Listeria monocytogenes PCR serogrouping profile IVb-v1.
Lire plus29 avr. 2011
publication
Widespread carbapenem resistant Acinetobacter baumannii clones in Italian hospitals revealed by a multicenter study
Lire plus28 avr. 2011
01 avr. 2011
publication
Epidemiology of methicillin-susceptible Staphylococcus aureus lineages in five major African towns: high prevalence of Panton-Valentine leukocidin genes
Lire plus13 févr. 2011
publication
Animal and human pathogenic Escherichia coli strains share common genetic backgrounds
Lire plus12 févr. 2011
publication
Genotypic and phenotypic characterization of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex with the proposal of Acinetobacter pittii sp. nov. (formerly Acinetobacter genomic species 3) and Acinetobacter nosocomialis sp. nov. (formerly Acinetobacter genomic species 13TU)
Lire plus12 févr. 2011
publication
Rapid genotyping of Achromobacter xylosoxidans, Acinetobacter baumannii, Klebsiella pneumoniae, Pseudomonas aeruginosa and Stenotrophomonas maltophilia isolates using melting curve analysis of RAPD-generated DNA fragments (McRAPD)
Lire plus01 févr. 2011
publication
Epidemiology of methicillin-resistant Staphylococcus aureus lineages in five major African towns: emergence and spread of atypical clones
Lire plus01 févr. 2011
publication
Multilocus VNTR analysis of Mycobacterium ulcerans strains isolated in Côte d’Ivoire
Lire plus01 févr. 2011
publication
Molecular epidemiological investigation of multidrug-resistant Acinetobacter baumannii strains in four Mediterranean countries with a multilocus sequence typing scheme
Lire plus20 déc. 2010
publication
Reconstructed ancestral sequences improve pathogen identification using resequencing DNA microarrays
Lire plus09 nov. 2010
publication
High prevalence of the arginine catabolic mobile element in carriage isolates of methicillin-resistant Staphylococcus epidermidis
Lire plus08 oct. 2010
15 sept. 2010
publication
Multilocus microsatellite markers for molecular typing of Candida glabrata: application to analysis of genetic relationships between bloodstream and digestive system isolates
Lire plus01 mai 2010
publication
Population genetic structure of Anopheles gambiae and Anopheles arabiensis in Niger
Lire plus07 avr. 2010
publication
The population structure of Acinetobacter baumannii: expanding multiresistant clones from an ancestral susceptible genetic pool
Lire plus24 févr. 2010
publication
Molecular epidemiology of multidrug-resistant Acinetobacter baumannii in a tertiary care hospital in Naples, Italy, shows the emergence of a novel epidemic clone
Lire plus11 janv. 2010
publication
Species delineation and clonal diversity in four Bifidobacterium species as revealed by multilocus sequencing
Lire plus30 sept. 2009
publication
First neisseria gonorrhoeae genotyping analysis in france: identification of a strain cluster with reduced susceptibility to Ceftriaxone
Lire plus21 sept. 2009
publication
Molecular epidemiology of extended-spectrum beta-lactamase-producing Klebsiella pneumoniae strains in a university hospital in Tunis, Tunisia, 1999-2005
Lire plus25 mars 2009
publication
Virulent clones of Klebsiella pneumoniae: identification and evolutionary scenario based on genomic and phenotypic characterization
Lire plus04 mars 2009
publication
Aedes albopictus mosquito: the main vector of the 2007 Chikungunya outbreak in Gabon
Lire plus01 févr. 2009
publication
Polyphasic characterization of xanthomonads pathogenic to members of the Anacardiaceae and their relatedness to species of Xanthomonas
Lire plus16 janv. 2009
publication
Uneven distribution of mating types among genotypes of Candida glabrata isolates from clinical samples
Lire plus16 déc. 2008
publication
From local surveys to global surveillance: three high-throughput genotyping methods for epidemiological monitoring of Xanthomonas citri pv. citri pathotypes
Lire plus03 déc. 2008
publication
Phylogeny and identification of Pantoea species and typing of Pantoea agglomerans strains by multilocus gene sequencing
Lire plus26 nov. 2008
publication
Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains
Lire plus06 oct. 2008
publication
Development of 14 minisatellite markers for the citrus canker bacterium, Xanthomonas citri pv. citri
Lire plus01 oct. 2008
publication
Comparison of PFGE and multilocus sequence typing for analysis of Klebsiella pneumoniae isolates
Lire plus19 sept. 2008
05 sept. 2008
13 mai 2008
publication
Emergence of carbapenem resistance in Acinetobacter baumannii in the Czech Republic is associated with the spread of multidrug-resistant strains of European clone II
Lire plus08 mai 2008
publication
MLVA-NET–a standardised web database for bacterial genotyping and surveillance
Lire plus24 déc. 2007
publication
Comparative phylogenies of Burkholderia, Ralstonia, Comamonas, Brevundimonas and related organisms derived from rpoB, gyrB and rrs gene sequences
Lire plus01 oct. 2007
publication
Guidelines for the validation and application of typing methods for use in bacterial epidemiology
Lire plus17 août 2007
publication
Multilocus sequence typing of Lactobacillus casei reveals a clonal population structure with low levels of homologous recombination
Lire plus10 août 2007
publication
Recombining population structure of Plesiomonas shigelloides (Enterobacteriaceae) revealed by multilocus sequence typing
Lire plus21 juin 2007
01 mai 2007
publication
[Evolutionary history of Salmonella Typhi illustrates a new pattern of epidemiologic dynamics]
Lire plus24 nov. 2006
01 sept. 2006
01 août 2006
publication
Identification of Acinetobacter species and genotyping of Acinetobacter baumannii by multilocus PCR and mass spectrometry
Lire plus23 mai 2006
publication
Genome microevolution of chikungunya viruses causing the Indian Ocean outbreak
Lire plus01 déc. 2005
publication
Variants of the Klebsiella pneumoniae OKP chromosomal beta-lactamase are divided into two main groups, OKP-A and OKP-B
Lire plus01 nov. 2005
01 sept. 2005
publication
Regional occurrence of plasmid-mediated carbapenem-hydrolyzing oxacillinase OXA-58 in Acinetobacter spp. in Europe
Lire plus01 sept. 2005
publication
Repetitive-DNA-element PCR fingerprinting and antibiotic resistance of pan-European multi-resistant Acinetobacter baumannii clone III strains
Lire plus19 août 2005
publication
Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis
Lire plus01 août 2005
01 août 2005
publication
Six groups of the OXY beta-Lactamase evolved over millions of years in Klebsiella oxytoca
Lire plus01 mars 2005
publication
Identification of coagulase-negative staphylococci other than Staphylococcus epidermidis by automated ribotyping
Lire plus22 janv. 2005
publication
Identification and antimicrobial susceptibility of 100 Klebsiella animal clinical isolates
Lire plus01 déc. 2004
publication
Diversity of aminoglycoside-resistance genes and their association with class 1 integrons among strains of pan-European Acinetobacter baumannii clones
Lire plus01 oct. 2004
publication
Species distribution and ribotype diversity of Burkholderia cepacia complex isolates from French patients with cystic fibrosis
Lire plus01 oct. 2004
publication
Development of a rapid identification method for Klebsiella pneumoniae phylogenetic groups and analysis of 420 clinical isolates
Lire plus01 août 2004
publication
Molecular serotyping of Klebsiella species isolates by restriction of the amplified capsular antigen gene cluster
Lire plus01 juil. 2004
publication
Diversity and evolution of the class A chromosomal beta-lactamase gene in Klebsiella pneumoniae
Lire plus01 mars 2004
publication
Identification of a new geographically widespread multiresistant Acinetobacter baumannii clone from European hospitals
Lire plus01 janv. 2004
publication
Discrimination of Klebsiella pneumoniae and Klebsiella oxytoca phylogenetic groups and other Klebsiella species by use of amplified fragment length polymorphism
Lire plus01 nov. 2003
publication
Evaluation of the polymorphisms associated with tandem repeats for Pseudomonas aeruginosa strain typing
Lire plus01 oct. 2003
publication
Identification of Klebsiella oxytoca using a specific PCR assay targeting the polygalacturonase pehX gene
Lire plus13 août 2003
publication
Occurrence and spread of SHV extended-spectrum beta-lactamase-producing Klebsiella pneumoniae isolates in Curacao
Lire plus01 févr. 2003
publication
Evidence for genetic exchange and hybridization in Trypanosoma cruzi based on nucleotide sequences and molecular karyotype
Lire plus01 févr. 2003
publication
Phylogenetic diversity of bat trypanosomes of subgenus Schizotrypanum based on multilocus enzyme electrophoresis, random amplified polymorphic DNA, and cytochrome b nucleotide sequence analyses
Lire plus01 nov. 2002
01 oct. 2002
publication
Evaluation of the Etest ESBL and the BD Phoenix, VITEK 1, and VITEK 2 automated instruments for detection of extended-spectrum beta-lactamases in multiresistant Escherichia coli and Klebsiella spp
Lire plus01 juin 2002
publication
Outbreak of a susceptible strain of Acinetobacter species 13 (sensu Tjernberg and Ursing) in an adult neurosurgical intensive care unit
Lire plus01 juin 2002
01 mai 2002
publication
Comparative evaluation of the BD Phoenix and VITEK 2 automated instruments for identification of isolates of the Burkholderia cepacia complex
Lire plus01 mars 2002
publication
Chromosomal size variation in Trypanosoma cruzi is mainly progressive and is evolutionarily informative
Lire plus01 sept. 2001
publication
Characterisation of large and small subunit rRNA and mini-exon genes further supports the distinction of six Trypanosoma cruzi lineages
Lire plus01 juil. 2001
26 mai 2001
01 mai 2001
publication
Phylogenetic diversity of Klebsiella pneumoniae and Klebsiella oxytoca clinical isolates revealed by randomly amplified polymorphic DNA, gyrA and parC genes sequencing and automated ribotyping
Lire plus01 nov. 2000
publication
Identification of six Trypanosoma cruzi lineages by sequence-characterised amplified region markers
Lire plus01 nov. 2000
publication
Molecular epidemiology of penicillin-resistant Streptococcus pneumoniae colonizing children with community-acquired pneumonia and children attending day-care centres in Fortaleza, Brazil
Lire plus01 oct. 2000
publication
Molecular surveillance of European quinolone-resistant clinical isolates of Pseudomonas aeruginosa and Acinetobacter spp. using automated ribotyping
Lire plus01 juil. 2000
publication
Genomic rearrangements in trypanosomatids: an alternative to the “one gene” evolutionary hypotheses?
Lire plus01 juil. 2000
publication
In vitro potency of moxifloxacin, clinafloxacin and sitafloxacin against 248 genetically defined clinical isolates of Staphylococcus aureus
Lire plus01 mai 2000
publication
Distinguishing species of the Burkholderia cepacia complex and Burkholderia gladioli by automated ribotyping
Lire plus01 mai 2000
publication
Population structure and genetic typing of Trypanosoma cruzi, the agent of Chagas disease: a multilocus enzyme electrophoresis approach
Lire plus01 avr. 2000
publication
In vitro activities of sitafloxacin (DU-6859a) and six other fluoroquinolones against 8,796 clinical bacterial isolates
Lire plus01 janv. 2000
publication
Epidemiology of quinolone resistance of Klebsiella pneumoniae and Klebsiella oxytoca in Europe
Lire plus01 janv. 2000
publication
Identification of six Trypanosoma cruzi phylogenetic lineages by random amplified polymorphic DNA and multilocus enzyme electrophoresis
Lire plus01 déc. 1999
publication
Molecular epidemiology of quinolone resistance and comparative in vitro activities of new quinolones against European Staphylococcus aureus isolates
Lire plus01 oct. 1999
publication
Association of alterations in ParC and GyrA proteins with resistance of clinical isolates of Enterococcus faecium to nine different fluoroquinolones
Lire plus01 août 1999
publication
Comparative in vitro activities of ciprofloxacin, clinafloxacin, gatifloxacin, levofloxacin, moxifloxacin, and trovafloxacin against Klebsiella pneumoniae, Klebsiella oxytoca, Enterobacter cloacae, and Enterobacter aerogenes clinical isolates with alterations in GyrA and ParC proteins
Lire plus01 janv. 1999
publication
A phylogenetic analysis by multilocus enzyme electrophoresis and multiprimer random amplified polymorphic DNA fingerprinting of the Leishmania genome project Friedlin reference strain
Lire plus01 mai 1998
publication
A phylogenetic analysis of the Trypanosoma cruzi genome project CL Brener reference strain by multilocus enzyme electrophoresis and multiprimer random amplified polymorphic DNA fingerprinting
Lire plus01 mai 1998