Search anything and hit enter
  • Teams
  • Members
  • Projects
  • Events
  • Calls
  • Jobs
  • publications
  • Software
  • Tools
  • Network
  • Equipment

A little guide for advanced search:

  • Tip 1. You can use quotes "" to search for an exact expression.
    Example: "cell division"
  • Tip 2. You can use + symbol to restrict results containing all words.
    Example: +cell +stem
  • Tip 3. You can use + and - symbols to force inclusion or exclusion of specific words.
    Example: +cell -stem
e.g. searching for members in projects tagged cancer
Search for
Count
IN
OUT
Content 1
  • member
  • team
  • department
  • center
  • program_project
  • nrc
  • whocc
  • project
  • software
  • tool
  • patent
  • Administrative Staff
  • Assistant Professor
  • Associate Professor
  • Clinical Research Assistant
  • Clinical Research Nurse
  • Clinician Researcher
  • Department Manager
  • Dual-education Student
  • Full Professor
  • Honorary Professor
  • Lab assistant
  • Master Student
  • MD-PhD Student
  • Medical Staff
  • Non-permanent Researcher
  • Nursing Staff
  • Permanent Researcher
  • Pharmacist
  • PhD Student
  • Physician
  • Post-doc
  • Prize
  • Project Manager
  • Research Associate
  • Research Engineer
  • Retired scientist
  • Technician
  • Undergraduate Student
  • Veterinary
  • Visiting Scientist
  • Deputy Director of Center
  • Deputy Director of Department
  • Deputy Director of National Reference Center
  • Deputy Head of Facility
  • Director of Center
  • Director of Department
  • Director of Institute
  • Director of National Reference Center
  • Group Leader
  • Head of Facility
  • Head of Operations
  • Head of Structure
  • Honorary President of the Departement
  • Labex Coordinator
Content 2
  • member
  • team
  • department
  • center
  • program_project
  • nrc
  • whocc
  • project
  • software
  • tool
  • patent
  • Administrative Staff
  • Assistant Professor
  • Associate Professor
  • Clinical Research Assistant
  • Clinical Research Nurse
  • Clinician Researcher
  • Department Manager
  • Dual-education Student
  • Full Professor
  • Honorary Professor
  • Lab assistant
  • Master Student
  • MD-PhD Student
  • Medical Staff
  • Non-permanent Researcher
  • Nursing Staff
  • Permanent Researcher
  • Pharmacist
  • PhD Student
  • Physician
  • Post-doc
  • Prize
  • Project Manager
  • Research Associate
  • Research Engineer
  • Retired scientist
  • Technician
  • Undergraduate Student
  • Veterinary
  • Visiting Scientist
  • Deputy Director of Center
  • Deputy Director of Department
  • Deputy Director of National Reference Center
  • Deputy Head of Facility
  • Director of Center
  • Director of Department
  • Director of Institute
  • Director of National Reference Center
  • Group Leader
  • Head of Facility
  • Head of Operations
  • Head of Structure
  • Honorary President of the Departement
  • Labex Coordinator
Search

← Go to Research

Go back
Scroll to top
Share
© Research
Scientific Fields
Diseases
Organisms
Applications
Technique

About

I received a Ph.D. in Biostatistics and Bioinformatics applied to Cancer Research in 2011 from the University Paris Sud XI, I was working at the Curie institute under the supervision of Emmanuel Barillot and François Radvanyi. My Ph.D. was about the unsupervised analysis of cancer transcriptome.  During my postdoctoral time, I worked on the computational and statistical analysis of NGS data.

My areas of interest and expertise include

  • functional genomics
  • human genetics
  • statistical analysis of high-dimensional data
  • normalization, batch-correction, meta-analysis of high-throughput data
  • unsupervised learning, independent component analysis
  • NGS data analysis (RNA-Seq, DNA-Seq, …)
  • analysis of the non-coding genome, transposable elements

Courses

09:00
16
Jan 2017
Course

Introduction to data analysis

This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […]
Bioinformatics and Biostatistics HUB
Stéphane Descorps-Declère
Marie-Agnès Dillies
Gaël Millot
Anne Biton
Stevenn Volant
Quentin Giai Gianetto
Vincent Guillemot
Nicolas Maillet
Blaise Li
Anna Zhukova
Hugo Varet
Amandine Perrin
Eric Deveaud
Bertrand Néron
2017-01-16 09:00:00 2017-02-17 13:00:00 Europe/Paris Introduction to data analysis This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […] 28 Rue du Docteur Roux, Paris, France Add to Calendar
09:00
10
May 2016
Course

Morning session – Introduction to NGS data analysis

The Hub of Bioinformatics and Biostatistics at the Institut Pasteur organizes thematic courses open to everybody. The second session, entitled “Introduction to NGS data analysis” will take place every Tuesday, from the May 10th […]
Claudia Chica
Frédéric Lemoine
Jack Christophe Cossec
Hugo Varet
Anne Biton
Natalia Pietrosemoli
Guilhem Janbon
Rachel Torchet
Pierre Lechat
Amine Ghozlane
Nicolas Maillet
Axel Cournac
2016-05-10 09:00:00 2016-06-28 12:00:00 Europe/Paris Morning session – Introduction to NGS data analysis The Hub of Bioinformatics and Biostatistics at the Institut Pasteur organizes thematic courses open to everybody. The second session, entitled “Introduction to NGS data analysis” will take place every Tuesday, from the May 10th […] 28 Rue du Dr Roux, Paris, France Add to Calendar
09:00
08
Mar 2016
Course

Morning session – Data analysis using R

This course is an introduction to data analysis. It is better to have a minimal knowledge of R. If not, an introductory tutorial is available on the course’s web page and the basics of […]
Bioinformatics and Biostatistics HUB
Marie-Agnès Dillies
Stevenn Volant
Hugo Varet
Anne Biton
2016-03-08 09:00:00 2016-04-12 12:00:00 Europe/Paris Morning session – Data analysis using R This course is an introduction to data analysis. It is better to have a minimal knowledge of R. If not, an introductory tutorial is available on the course’s web page and the basics of […] 28 Rue du Docteur Roux, Paris, France Add to Calendar
09:00
22
Oct 2018
Course

Introduction to Data Analysis

This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […]
Bioinformatics and Biostatistics HUB
Marie-Agnès Dillies
Vincent Guillemot
Emeline Perthame
Hugo Varet
Stevenn Volant
Thomas Obadia
Quentin Giai Gianetto
Anne Biton
Claudia Chica
Christophe Becavin
Gaël Millot
Violaine Saint-André
2018-10-22 09:00:00 2018-11-20 00:00:00 Europe/Paris Introduction to Data Analysis This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […] 28 Rue du Dr Roux, Paris, France Add to Calendar
09:00
08
Jan 2018
Course

Introduction to Data Analysis

This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […]
Bioinformatics and Biostatistics HUB
INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations
Marie-Agnès Dillies
Stéphane Descorps-Declère
Vincent Guillemot
Emeline Perthame
Hugo Varet
Stevenn Volant
Thomas Obadia
Gaël Millot
Quentin Giai Gianetto
Anne Biton
Christophe Becavin
2018-01-08 09:00:00 2018-02-02 00:00:00 Europe/Paris Introduction to Data Analysis This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […] 28 Rue du Docteur Roux, Paris, France Add to Calendar

Projects

Project
Ongoing
15 Members

Bioconvert

Thomas Cokelaer (PI)

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another. Life science uses many different formats. They may be old, or with complex syntax and converting […]
Project
Ongoing
8 Members

MECANICOC

Uwe Maskos (PI)

[Version française]… Cocaine addiction (CocAdd) is a major public health issue affecting 3% of the worlwide population, without validated pharmacotherapy. Nicotinic acetylcholine receptors (nAChRs)have been repeatedly associated in Human and rodent response to cocaine. […]
Project
Ongoing
3 Members

Genomic architecture of normal and pathological human neuroanatomical diversity

Roberto Toro (PI)

Human brain anatomy is strikingly diverse and highly inheritable: genetic factors may explain up to 80% of its variability. Genome-wide scans looking for associations between genomic polymorphism and neuroanatomical variability identify, however, just a […]

CV

Education

Oct. 2007-June 2011: Ph.D. in bioinformatics and biostatistics.
Institut Curie / Inserm U900 / Mines ParisTech and CNRS UMR144, Institut Curie, France. Title: “Independent Component Analysis of Cancer Transcriptome”.
Supervisors: Dr. Emmanuel Barillot and Dr. François Radvanyi

Université Paris-Sud XI d’Orsay, France:
2005 – 2007:  M. Sc. BIBS “Bioinformatics and Biostatistics”.
2004 – 2005:  B. Sc. BIBS “Bioinformatics and Biostatistics”.
2002 – 2004:  DEUG MIAS “Mathematics and Informatics applied to sciences”.

Work Experience 

Since November 2015: Pasteur Institute, Paris, France. 
Bioinformatics Research Scientist.
March 2014 – November 2015: University of California, San Francisco, USA.

Postdoctoral researcher with Dr. Noah Zaitlen. Study of allele-specific expression; data analysis of sequencing data (DNA-Seq, RNA-Seq) from functional genomics experiments, CrispR screens.

August 2011 – February 2014: University of California, Berkeley.

Postdoctoral researcher with Pr. Terry Speed in the Statistics Department. Correction of batch effects in miRNA-Seq and RNA-Seq data, analysis of transposable elements in RNA-Seq data from The Cancer Genome Atlas.

Spring 2007 (6 months): Genomic Science Department, Sanofi-Aventis, Vitry, France. Master internship with Dr. Arne Muller and Dr. Edgardo Ferran: Analysis of transcriptome data from treated cell lines.

Teaching

2007 – 2010:  Université Paris Descartes V, France.
Biomathematics for undergraduate students in pharmaceutic sciences (46h per year): Algebra, Analysis, Probabilities and Statistics.
Biostatistics for undergraduate students in Biology (18h per year): Initiation to descriptive statistics and statistical tests.

From 2015: Institut Pasteur.
Teaching of statistics (multivariate analysis, statistical power, …) with practical sessions in R, RNA-Seq data analysis, and experimental design. Public: PhD students and researchers in biology.

Programming Skills

Progr. languages: python, java, shell scripting
Statistical packages: S-plus/R, Matlab

Softwares

GeneValorization. Java webstart application that gives a clear and handful overview of the bibliography corresponding to one particular gene list.
EMA. R package that proposes an analysis strategy and a selection of tools to investigate microarray gene expression data.
MineICA. R package whose goal is to facilitate the interpretation of an ICA decomposition of genomics data. Available in Bioconductor.

Publications

Download