Jean-Christophe Olivo-Marin is the Head of the Bioimage Analysis unit and the director of the institut Carnot Pasteur Microbes et Santé. He chaired the Cell Biology and Infection Department (2010-2014) and was CTO and Director of the Center for Innovation and Technological Research (2015-2018) at Institut Pasteur. Previous to that, he was a Staff Scientist at the European Molecular Biology Laboratory, Heidelberg, from 1990 to 1998. He received the PhD and HDR degrees in optics and signal processing from the Institut d’Optique Théorique et Appliquée, University of Paris-Orsay, France. He is a Fellow of IEEE, SPIE, OPTICA, and AAIA, and an IEEE Signal Processing Society Distinguished Lecturer. He is the recipient of the Distinguished Service Award from IEEE Engineering in Biology and Medicine Society and of the Prix Thérèse Lebrasseur from Fondation de France. His research interests are in mathematical and machine learning approaches for bioimage analysis, computer vision and biophysics analysis for cellular dynamics.
Click to view graph
Connections
Click to view timeline
Timeline
Courses
Pasteur course Advanced Bioimage Analysis with Artificial Intelligence (AI) – 2026
Topics Both tracks of the course have a specific focus on hands-on and interactive tutorials. They are meant to be convivial and foster a collaborative atmosphere between students and teachers. Each day begin with a […]
2026-06-01 09:00:00
2026-06-05 18:00:00
Europe/Paris
Pasteur course Advanced Bioimage Analysis with Artificial Intelligence (AI) – 2026
Topics Both tracks of the course have a specific focus on hands-on and interactive tutorials. They are meant to be convivial and foster a collaborative atmosphere between students and teachers. Each day begin with a […]
Institut Pasteur, Rue du Docteur Roux, Paris, France
Transversal Projects
Projects
Software
Former Teams
Publications
Download-
2025SAMJ: Fast Image Annotation on ImageJ/Fiji via Segment Anything Model, arXiv:2506.02783.
-
2025SINETRA: A Versatile Framework for Evaluating Single Neuron Tracking in Behaving Animals, ISBI, Houston, TX, USA, 2025, pp. 1-5.
-
2025Statistical analysis of spatial patterns in tumor microenvironment images, Nature Communications volume 16, Article number: 3090 (2025) .
-
2025Statistical analysis of spatial patterns in tumor microenvironment images., Nat Commun 2025 Mar; 16(1): 3090.
-
2025Neural-network model for characterizing stochastic dynamic variability of cellular particles, International Symposium on Biomedical Imaging, 2025..
-
2024Estimation of Stiffness Maps in Deforming Cells Through Optical Flow with Bounded Curvature, IEEE Transactions on Medical Imaging.
-
2024Deep ContourFlow: Advancing Active Contours with Deep Learning, arXiv:2407.10696.
-
2024Fibronectin induces a transition from amoeboid to a fan morphology and modifies migration in Entamoeba histolytica., PLoS Pathog 2024 Jul; 20(7): e1012392.
-
2024Semi-Supervised Segmentation with Topological Penalization for Quantifying Retinal Degeneration in Histological Sections, 2024 IEEE International Symposium on Biomedical Imaging (ISBI).
-
2024Sparse Non-Negative Matrix Factorization for Preclinical Bioluminescent Imaging, 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI).
-
+View full list of publications