Jean-Christophe Olivo-Marin is the Head of the Biological Image Analysis unit and the director of the institute Carnot Pasteur Microbes et Santé. He chaired the Cell Biology and Infection Department (2010-2014) and was CTO and Director of the Center for Innovation and Technological Research (2015-2018). Previous to that, he was a staff scientist at the European Molecular Biology Laboratory, Heidelberg, from 1990 to 1998. He received the PhD and HDR degrees in optics and signal processing from the Institut d’Optique Théorique et Appliquée, University of Paris-Orsay, France. He is a Fellow of IEEE and of SPIE, an IEEE Signal Processing Society Distinguished Lecturer, and was Chair of the IEEE SPS Bio Imaging and Signal Processing Technical Committee (BISP-TC). His research interests are in image analysis of multidimensional microscopy images, computer vision and motion analysis for cellular dynamics, and in mathematical approaches for biological imaging.
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2024Sparse Non-Negative Matrix Factorization for Preclinical Bioluminescent Imaging, 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI).
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2024Automatic monitoring of neural activity with single-cell resolution in behaving Hydra, Sci Rep 14, 5083 (2024).
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2024Bridging the Gap: Integrating Cutting-edge Techniques into Biological Imaging with deepImageJ, bioRxiv, 2024.
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2024JDLL: a library to run deep learning models on Java bioimage informatics platforms., Nat Methods 2024 Jan; 21(1): 7-8.
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2023Encystation and Stress Responses under the Control of Ubiquitin-like Proteins in Pathogenic Amoebae, Microorganisms.
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2023Tracking Intermittent Particles with Self-Learned Visual Features, IEEE 20th International Symposium on Biomedical Imaging (ISBI), Cartagena, Colombia, 2023, pp. 1-5.
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2023Intermediate filaments promote glioblastoma cell invasion by controlling cell deformability and mechanosensitive gene expression, 2023.
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2023JDLL: A library to run Deep Learning models on Java bioimage informatics platforms, Electrical Engineering and Systems Science > Image and Video Processing.
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2023Automatic diagnosis and classification of breast surgical samples with dynamic full-field OCT and machine learning, Journal of Medical Imaging, Vol. 10, Issue 3, 034504.
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2023Live Cells Imaging and Comparative Phosphoproteomics Uncover Proteins from the Mechanobiome in Entamoeba histolytica., Int J Mol Sci 2023 May; 24(10): .
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