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  • Master Student
  • MD-PhD Student
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  • PhD Student
  • Physician
  • Post-doc
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  • Technician
  • Undergraduate Student
  • Veterinary
  • Visiting Scientist
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  • Deputy Head of Facility
  • Director of Center
  • Director of Department
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Member: Head of Structure

Jean-Christophe Olivo-Marin

• Biological Image Analysis

Laboratory: Biological Image Analysis

About

Jean-Christophe Olivo-Marin is the Head of the Bioimage Analysis unit and the director of the institut Carnot Pasteur Microbes et Santé. He chaired the Cell Biology and Infection Department (2010-2014) and was CTO and Director of the Center for Innovation and Technological Research (2015-2018) at Institut Pasteur. Previous to that, he was a Staff Scientist at the European Molecular Biology Laboratory, Heidelberg, from 1990 to 1998. He received the PhD and HDR degrees in optics and signal processing from the Institut d’Optique Théorique et Appliquée, University of Paris-Orsay, France. He is a Fellow of IEEE, SPIE, OPTICA, and AAIA, and an IEEE Signal Processing Society Distinguished Lecturer. He is the recipient of the Distinguished Service Award from IEEE Engineering in Biology and Medicine Society and of the Prix Thérèse Lebrasseur from Fondation de France. His research interests are in mathematical and machine learning approaches for bioimage analysis, computer vision and biophysics analysis for cellular dynamics.

Courses

09:00
12
May 2025
Course

NEUBIAS Pasteur course on Bioimage Analysis – 2025

Preliminary schedule: Topics Both tracks of the course have a specific focus on hands-on and interactive tutorials. They are meant to be convivial and foster a collaborative atmosphere between students and teachers. Each day begin […]
Biological Image Analysis
Image Analysis Hub
Photonic BioImaging (UTechS PBI)
Bioinformatics and Biostatistics HUB
Research and Resource Centre for Scientific Informatics
Jean-Christophe Olivo-Marin
Jean-Yves Tinevez
Stéphane Rigaud
Monica Sala
Hervé Waxin
Virginie Ponticelli
2025-05-12 09:00:00 2025-05-16 18:00:00 Europe/Paris NEUBIAS Pasteur course on Bioimage Analysis – 2025 Preliminary schedule: Topics Both tracks of the course have a specific focus on hands-on and interactive tutorials. They are meant to be convivial and foster a collaborative atmosphere between students and teachers. Each day begin […] Institut Pasteur, Rue du Docteur Roux, Paris, France

Transversal Projects

INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations

IINCEPTION Goal The Inception aims to develop a core structure to mobilize data resources, numerical sciences, and fundamental experimental biology in various health issues (Official website here: https://www.inception-program.fr/en). The inception program uses Integrative Biology, […]

The institut Carnot Pasteur MS

Carnot, label of excellence Founded in 2006, the Carnot Label, granted by the French government, was designed to develop partnership-based research, meaning research conducted by public laboratories in partnership with socio-economic players, primarily industry […]

LabEx IBEID – Integrative Biology of Emerging Infectious Diseases

Presentation The aim of the Integrative Biology of Emerging Infectious Diseases (IBEID) project, coordinated by Professors Philippe Sansonetti and Pascale Cossart and currently coordinated by Carla Saleh and Philippe Bastin, is to develop a […]

Projects

Project
Ongoing
4 Members

Next generation of Structured Illumination Microscopy (SIM) for biological imaging

Jean-Christophe Olivo-Marin (PI)
Project
Ongoing
4 Members

Machine learning methods to predict cancerous areas from Full Field Optical Coherence Tomography (FFOCT) and Dynamical FFOCT images

Vannary Meas-Yedid Hardy (PI)
Project
Ongoing
4 Members

Statistical analysis of spatial coupling in bioimaging with SODA

Thibault Lagache (PI)

To understand protein functions and molecular network organisation, it is important to determine the localisation of proteins at subcellular level. The in cellulo probing of molecular assemblies is usually performed with microscopy techniques which […]
Project
Ongoing
7 Members

Endothelium disruption by toxin-induced transcellular tunnels

Emmanuel Lemichez (PI)

Crossing of the epithelium and endothelium barriers by pathogens and their toxins represents essential steps in pejorative evolution of infections. We have discovered that several exotoxins from S. aureus and C. botulinum disrupt epithelium and endothelium barriers by targeting […]
Project
Ongoing
5 Members

DIM ELICIT – Domain of Main Interest “Empowering LIfe sCiences with Innovative Technologies”

Jean-Christophe Olivo-Marin (PI)

The DIM ELICIT (« Empowering LIfe sCiences with Innovative Technologies ») is the network of innovative technologies for biology in Ile-de-France region. Co-leaded by the Institut Pierre Gilles de Gennes for microfluidics (IPGG) and […]
Project
Ongoing
15 Members

Microfluidics@Pasteur

Samy Gobaa (PI)

Welcome to the club! Welcome to Microfluidics@Pasteur! Our goal is to serve as the major entry point to all the scientists on the campus (beginners and experts) interested in undertaking projects where microfluidics is involved. Our […]
Project
Ongoing
21 Members

Protected: Pasteur Human Genome

Thomas Bourgeron (PI)

There is no excerpt because this is a protected post.
Project
Completed
2 Members

Compressive Sensing in biological imaging

Jean-Christophe Olivo-Marin (PI)

We are investigating a new global framework for smart acquisition methods in biological imaging whereby it is possible with mathematical tools to recover a high quality image from very fewer samples than the full […]
Project
Completed
7 Members

Imaging and mathematical modelling of cell morphology and motility

(PI)

Elucidating the mechanisms underlying cell deformation and motility is a topic of major interest in cell biology, for they are strongly involved in cell development, immune responses, cancer and infectious diseases. This projects focuses on the […]
Project
Completed
4 Members

Multiple spot tracking in 3D+t microscopy

Jean-Christophe Olivo-Marin (PI)

We have developed a method to perform the detection and the tracking of microscopic spots directly on four dimensional (3D+t) image data. It extends our previous work by being able to detect with high […]

Software

Software
Ongoing
6 Members

Icy: an open community platform for bioimage informatics

Stéphane Dallongeville (PI)

We started a project for a new open-source image processing software platform dedicated to community work (de Chaumont et al, Nature Methods 2012). It includes a flexible framework designed around and with a native […]
Software
ongoing
1 Member

PG-URE estimator

Jean-Christophe Olivo-Marin (PI)

The PG-URE estimator is a statistical tool that can be used to assess the performance of image denoising algorithms in presence of mixed Poisson-Gaussian noise. In the spirit of reproducible research, the Matlab code […]

Publications

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