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  • Honorary Professor
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  • Permanent Researcher
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  • PhD Student
  • Physician
  • Post-doc
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  • Research Associate
  • Research Engineer
  • Retired scientist
  • Technician
  • Undergraduate Student
  • Veterinary
  • Visiting Scientist
  • Deputy Director of Center
  • Deputy Director of Department
  • Deputy Director of National Reference Center
  • Deputy Head of Facility
  • Director of Center
  • Director of Department
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About

I am a medical epidemiologist (MD in 1988 at Paris V, specialisation in rheumatology in 1990, Paris V, and DrPH from Harvard School of Public Health in 1993) specialized in infectious diseases epidemiology. After working at WHO at the clinical research unit of the Global Program on AIDS (1993-1994), I spent five years in Ethiopia and two years in the Netherlands working as the Program Manager of the Ethio-Netherlands AIDS Research Project (1994-2001). In 2002, I joined Institut Pasteur to launch the Emerging Diseases Epidemiology unit. There, my focus has been on viral hepatitis C (North-Coordinator of the ANRS research site on viral hepatitis; www.hepnile.org) and emerging infections such as the SARS (Scientific Coordinator of the EPISARS project which aimed prevent the re-emergence of SARS through the control of its animal reservoir) and the MERS-CoV. I also have a strong teaching involvement, as co-Director and founder of the Pasteur-Cnam School of Public Health (http://ecole-pasteur.cnam.fr), and coordinator of a master in public health with strong focus on infectious diseases. In 2014, I was appointed as Director of the newly created Pasteur Centre for Global Health Research and Education.

Courses

09:00
14
Oct 2024
Course

Analyse de données avec Stata (3 sessions)

Ce cours fait partie d’un parcours de formation du Master Specialisé en Santé Publique de l’Ecole Pasteur-Cnam-EHESP. Le cours est composé de trois cours d’une semaine pouvant être suivis indépendamment, et présente les principes […]
Epidemiology of Emerging Diseases
Global Health
Arnaud Fontanet
Laura Schaeffer
Laura Tondeur
Yoann Madec
Lénaig Le Fouler
Monica Sala
Hervé Waxin
Virginie Ponticelli
Sarah Michel-Anfray
2024-10-14 09:00:00 2025-02-21 18:00:00 Europe/Paris Analyse de données avec Stata (3 sessions) Ce cours fait partie d’un parcours de formation du Master Specialisé en Santé Publique de l’Ecole Pasteur-Cnam-EHESP. Le cours est composé de trois cours d’une semaine pouvant être suivis indépendamment, et présente les principes […] Institut Pasteur, Rue du Docteur Roux, Paris, France
09:00
10
Mar 2025
Course

Mother and child dyad: current evidence in a global perspective

This course is an intensive one-week program focused on the key issues surrounding maternal and child health. For more information and program, please, visit the course webpage.
Epidemiology and Modelling of Antibacterial Evasion (EMAE)
Global Health
Bich-Tram Huynh
Yasmine Belkaid
Arnaud Fontanet
Monica Sala
Hervé Waxin
Virginie Ponticelli
Sarah Michel-Anfray
2025-03-10 09:00:00 2025-03-14 18:00:00 Europe/Paris Mother and child dyad: current evidence in a global perspective This course is an intensive one-week program focused on the key issues surrounding maternal and child health. For more information and program, please, visit the course webpage. Institut Pasteur, Rue du Docteur Roux, Paris, France
09:00
14
Apr 2025
Course

Changements climatiques et santé des populations

Ce cours est destiné aux étudiants de master et aux doctorants qui souhaitent comprendre les liens entre changements climatiques et santé publique, et se familiariser avec différents outils permettant de mieux caractériser ces relations. […]
Arnaud Fontanet
Monica Sala
Hervé Waxin
Virginie Ponticelli
2025-04-14 09:00:00 2025-04-18 18:00:00 Europe/Paris Changements climatiques et santé des populations Ce cours est destiné aux étudiants de master et aux doctorants qui souhaitent comprendre les liens entre changements climatiques et santé publique, et se familiariser avec différents outils permettant de mieux caractériser ces relations. […] Institut Pasteur, Rue du Docteur Roux, Paris, France
09:00
28
Apr 2025
Course

Vaccine epidemiology

Each theoretical course is followed by practical sessions to apply the concepts to real-world vaccination program scenarios. For more information and program, please, visit the course webpage.
Arnaud Fontanet
Monica Sala
Hervé Waxin
Virginie Ponticelli
2025-04-28 09:00:00 2025-04-30 18:00:00 Europe/Paris Vaccine epidemiology Each theoretical course is followed by practical sessions to apply the concepts to real-world vaccination program scenarios. For more information and program, please, visit the course webpage. Institut Pasteur, Rue du Docteur Roux, Paris, France
00:00
18
Dec 2023
Course

Viral Outbreaks and Pandemics, A One Health Approach MOOC

Understand why viral outbreaks and pandemics are becoming more frequent and how the world is learning to manage emerging infections in a one health approach. The MOOC is directed by Arnaud Fontanet, Pierre-Emmanuel Ceccaldi, […]
Virus HIV1
Virology
Arnaud Fontanet
Pierre-Emmanuel Ceccaldi
Jean-Pierre Vartanian
Stephan Zientara
Laurie Pinaud
Clementine Schilte
Odile Sismeiro
Emerson Leonardo Alvarez Quinche
2023-12-18 00:00:00 2025-02-12 00:00:00 Europe/Paris Viral Outbreaks and Pandemics, A One Health Approach MOOC Understand why viral outbreaks and pandemics are becoming more frequent and how the world is learning to manage emerging infections in a one health approach. The MOOC is directed by Arnaud Fontanet, Pierre-Emmanuel Ceccaldi, […]
08:00
09
Apr 2024
Course

Viral Hepatitis MOOC

In this MOOC, you will find the latest developments on the intimate structure and pathophysiology of hepatic viruses, as well as the epidemiology and clinical courses of hepatitis. Register on : https://www.fun-mooc.fr/en/courses/viral-hepatitis/  Hepatitis is an […]
Virus HIV1
Virology
Christian Bréchot
Arnaud Fontanet
Pascal Pineau
Yusuke Shimakawa
Muriel Vray
Stefaniia Ivashchenko
2024-04-09 08:00:00 2025-04-08 20:00:00 Europe/Paris Viral Hepatitis MOOC In this MOOC, you will find the latest developments on the intimate structure and pathophysiology of hepatic viruses, as well as the epidemiology and clinical courses of hepatitis. Register on : https://www.fun-mooc.fr/en/courses/viral-hepatitis/  Hepatitis is an […]

Transversal Projects

Emerging Infectious Diseases

Ever since its very early days, the Institut Pasteur has been committed to tackling emerging infections, and its work has left an extraordinary legacy. Many emerging infectious diseases are zoonoses, in which an animal […]

INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations

IINCEPTION Goal The Inception aims to develop a core structure to mobilize data resources, numerical sciences, and fundamental experimental biology in various health issues (Official website here: https://www.inception-program.fr/en). The inception program uses Integrative Biology, […]

The Healthy Human Global Project

Susceptibility to infections, disease progression and severity, and response to medical therapies and vaccines are highly variable from one individual to another. The complexity of individual immune responses is such that it has not […]

LabEx IBEID – Integrative Biology of Emerging Infectious Diseases

Presentation The aim of the Integrative Biology of Emerging Infectious Diseases (IBEID) project, coordinated by Professors Philippe Sansonetti and Pascale Cossart and currently coordinated by Carla Saleh and Philippe Bastin, is to develop a […]

Projects

Project
Ongoing
20 Members

Pasteur-Cnam-EHESP school of public health

Arnaud Fontanet (PI)

The Institut Pasteur, in collaboration with the National Conservatory of Arts and Crafts (Cnam) and the French School of Public Health (EHESP), has pooled its complementary expertise to create the Pasteur-Cnam-EHESP School of Public […]
Project
Ongoing
3 Members

Longitudinal follow-up of a population cohort in a French city with high SARS-CoV-2 circulation in early 2020 : the COVID-Oise cohort

Arnaud Fontanet (PI)

(Last update: 10/10/2023) Context In early 2020, the first French death attributed to the SARS-CoV-2 virus was a teacher from Crépy-en-Valois, a city north of Paris. The intense circulation of the novel coronavirus in […]
Project
Ongoing
6 Members

Quantifying the health impacts of Zika virus infection

Arnaud Fontanet (PI)

Previously considered to cause limited human infection and mild disease, Zika virus (ZIKV) caused several large outbreaks in Yap Island in 2007, in French Polynesia in 2013-2014 and the 2015-2016 epidemic across the Americas […]
Project
Completed
6 Members

ComCor: Study of sociodemographic factors, behaviors and practices associated with SARS-CoV-2 infection

Arnaud Fontanet (PI)

The ComCor study is a nationwide case-control study which aims first to describe the locations and circumstances of recent SARS-CoV-2 infection, and second, to assess the role of different settings and activities in the […]
Project
Ongoing
13 Members

AFRIPOX – A One Health approach of monkeypox in Centrafrican Republic

Arnaud Fontanet (PI)

Monkeypox is an emerging Orthopoxvirus responsible for monkeypox disease, clinically similar to smallpox with a lethality of around 1 to 10%. This disease is a zoonosis initially transmitted from an animal reservoir and then […]
Project
Ongoing
21 Members

Protected: Pasteur Human Genome

Thomas Bourgeron (PI)

There is no excerpt because this is a protected post.
Project
Ongoing
5 Members

ANRS 12332 HepNile: Evaluation of “Real Life” Efficacy and Safety of antiviral treatments including new Direct Antiviral Agents among patients treated for Chronic Hepatitis C at Egyptian National Treatment Centres

Arnaud Fontanet (PI)

Background: Clinical trials are performed under optimal conditions where patients are highly selected without co-morbidities, clinical supervision is provided by specialists, and strict protocols are used to enhance patient compliance. Due to this, results […]
Project
Ongoing
2 Members

HCV research in Egypt

Arnaud Fontanet (PI)

Funding: ANRS & EC. The main research objectives of this multidisciplinary network funded by the ANRS and the EC are the assessment of the burden of HCV infection and disease in Egypt, the study […]
Project
Ongoing
2 Members

Epidemiology of Buruli ulcer in Cameroon

Arnaud Fontanet (PI)

  Funding: ANR, Fondation Raoul Follereau, Fondation SANOFI Espoir. In this new research program, we will conduct for the first time the simultaneous collection of environmental (plants and insects) and human samples in two […]
Project
Ongoing
3 Members

Acute Bacterial Meningitis Project: Investigation of the spatio-temporal dynamics of meningitis epidemics in Niger and the associated ecologic risk factors

Judith Mueller (PI)

  Funding : DCI Monaco. In collaboration with epidemiologists from the Centre de Recherche Médicale et Sanitaire (CERMES) in Niamey, we are using recent advances in Geographic Information Systems and statistical methodology to investigate […]

Publications

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