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2024Epithelial cells maintain memory of prior infection with Streptococcus pneumoniae through di-methylation of histone H3., Nat Commun 2024 Jul; 15(1): 5545.
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2024Alternative TSS use is widespread in Cryptococcus fungi in response to environmental cues and regulated genome-wide by the transcription factor Tur1., PLoS Biol 2024 Jul; 22(7): e3002724.
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2024Trait selection strategy in multi-trait GWAS: Boosting SNP discoverability., HGG Adv 2024 Jul; 5(3): 100319.
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2024Genomic and epidemiological evidence for the emergence of a L. infantum/L. donovani hybrid with unusual epidemiology in northern Italy., mBio 2024 Jun; (): e0099524.
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2024Metabolic reprogramming during Candida albicans planktonic-biofilm transition is modulated by the transcription factors Zcf15 and Zcf26., PLoS Biol 2024 Jun; 22(6): e3002693.
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2024The RBPome of influenza A virus NP-mRNA reveals a role for TDP-43 in viral replication., Nucleic Acids Res 2024 Apr; (): .
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2024A conserved NR5A1-responsive enhancer regulates SRY in testis-determination., Nat Commun 2024 Mar; 15(1): 2796.
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2024Notch3 is a genetic modifier of NODAL signalling for patterning asymmetry during mouse heart looping, bioRxiv.
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2024Distinct evolution of SARS-CoV-2 Omicron XBB and BA.2.86/JN.1 lineages combining increased fitness and antibody evasion., Nat Commun 2024 Mar; 15(1): 2254.
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2024The multiplicity of thioredoxin systems meets the specific lifestyles of Clostridia., PLoS Pathog 2024 Feb; 20(2): e1012001.
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2024Smoking changes adaptive immunity with persistent effects., Nature 2024 Feb; 626(8000): 827-835.
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2023Parvimonas micra, an oral pathobiont associated with colorectal cancer, epigenetically reprograms human colonocytes., Gut Microbes 2023 Dec; 15(2): 2265138.
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2023Transcriptome profiling of human col\onic cells exposed to the gut pathobiont Streptococcus gallolyticus subsp. gallolyticus., PLoS One 2023 ; 18(11): e0294868.
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2023The Mla system of diderm Firmicute Veillonella parvula reveals an ancestral transenvelope bridge for phospholipid trafficking., Nat Commun 2023 Nov; 14(1): 7642.
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2023Case Series of Primaquine-Induced Haemolytic Events in Controlled Trials with G6PD Screening., Pathogens 2023 Sep; 12(9): .
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2023Fast and Accurate Maximum-Likelihood Estimation of Multi-Type Birth-Death Epidemiological Models from Phylogenetic Trees., Syst Biol 2023 Sep; (): .
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2023Hemostasis defects underlying the hemorrhagic syndrome caused by Mammarenaviruses in a cynomolgus macaque model., Blood 2023 Sep; (): .
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2023Genotype and Phenotype Characterization of Rhinolophus sp. Sarbecoviruses from Vietnam: Implications for Coronavirus Emergence., Viruses 2023 Sep; 15(9): .
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2023BioConvert: a comprehensive format converter for life sciences., NAR Genom Bioinform 2023 Sep; 5(3): lqad074.
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2023Genetic identification and reiterated captures suggest that the Astyanax mexicanus El Pachón cavefish population is closed and declining., Zool Res 2023 Jul; 44(4): 701-711.
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2023Integrating full and partial genome sequences to decipher the global spread of canine rabies virus., Nat Commun 2023 Jul; 14(1): 4247.
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2023Three-dimensional images reveal the impact of the endosymbiont Midichloria mitochondrii on the host mitochondria., Nat Commun 2023 Jul; 14(1): 4133.
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2023Correction to: DNA topoisomerase 1 represses HIV-1 promoter activity through its interaction with a guanine quadruplex present in the LTR sequence., Retrovirology 2023 Jul; 20(1): 12.
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2023Proteogenomic Characterization of Bladder Cancer Reveals Sensitivity to Apoptosis Induced by Tumor Necrosis Factor-related Apoptosis-inducing Ligand in FGFR3-mutated Tumors., Eur Urol 2023 Jun; (): .
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2023Gallocin A, an Atypical Two-Peptide Bacteriocin with Intramolecular Disulfide Bonds Required for Activity., Microbiol Spectr 2023 Mar; (): e0508522.
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2023In-Depth Characterization of Full-Length Archived Viral Genomes after Nine Years of Posttreatment HIV Control., Microbiol Spectr 2023 Feb; 11(1): e0326722.
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2022Interindividual Differences in Cortical Thickness and Their Genomic Underpinnings in Autism Spectrum Disorder., Am J Psychiatry 2022 Mar; 179(3): 242-254.
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2022Genome-wide diversity of Zika virus: Exploring spatio-temporal dynamics to guide a new nomenclature proposal., Virus Evol 2022 ; 8(1): veac029.
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2022The role of glycosylphosphatidylinositol (gpi) anchored proteins in Cryptococcusneoformans., Microbes Infect 2022 ; 24(8): 105016.
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2021Genome instability drives epistatic adaptation in the human pathogen Leishmania., Proc Natl Acad Sci U S A 2021 12; 118(51): .
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2021GIP: an open-source computational pipeline for mapping genomic instability from protists to cancer cells., Nucleic Acids Res 2021 Dec; (): .
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2021Early Transcriptional Changes in Rabies Virus-Infected Neurons and Their Impact on Neuronal Functions., Front Microbiol 2021 ; 12(): 730892.
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2021The oxidative stress response of pathogenic Leptospira is controlled by two peroxide stress regulators which putatively cooperate in controlling virulence., PLoS Pathog 2021 Dec; 17(12): e1009087.
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2021SCHNAPPs – Single Cell sHiNy APPlication(s)., J Immunol Methods 2021 12; 499(): 113176.
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2021Leucobacter soli sp. nov., from soil amended with humic acid., Int J Syst Evol Microbiol 2021 Dec; 71(12): .
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2021How many markers are needed to robustly determine a cell’s type?, iScience 2021 Nov; 24(11): 103292.
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2021Kinetics of the Severe Acute Respiratory Syndrome Coronavirus 2 Antibody Response and Serological Estimation of Time Since Infection., J Infect Dis 2021 Nov; 224(9): 1489-1499.
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2021ELIXIR and Toxicology: a community in development, F1000Research 2021, 10(ELIXIR):1129.
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2021Extracting Dynamical Correlations and Identifying Key Residues for Allosteric Communication in Proteins by correlationplus., J Chem Inf Model 2021 Oct; 61(10): 4832-4838.
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2021Sleeping ribosomes: Bacterial signaling triggers RaiA mediated persistence to aminoglycosides., iScience 2021 Oct; 24(10): 103128.
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2021Dichotomous metabolic networks govern human ILC2 proliferation and function., Nat Immunol 2021 Nov; 22(11): 1367-1374.
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2021Role of the major determinant of polar flagellation FlhG in the endoflagella-containing spirochete Leptospira., Mol Microbiol 2021 Oct; (): .
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2021A new SARS-CoV-2 variant poorly detected by RT-PCR on nasopharyngeal samples, with high lethality: an observational study., Clin Microbiol Infect 2021 Oct; (): .
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2021Paenibacillus allorhizosphaerae sp. nov., from soil of the rhizosphere of Zea mays., Int J Syst Evol Microbiol 2021 Oct; 71(10): .
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2021Cellular anatomy of the mouse primary motor cortex., Nature 2021 10; 598(7879): 159-166.
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2021Comparative cellular analysis of motor cortex in human, marmoset and mouse., Nature 2021 10; 598(7879): 111-119.
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2021A high-risk retinoblastoma subtype with stemness features, dedifferentiated cone states and neuronal/ganglion cell gene expression., Nat Commun 2021 Sep; 12(1): 5578.
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2021Genomic epidemiology and strain taxonomy of Corynebacterium diphtheriae., J Clin Microbiol 2021 Sep; (): JCM0158121.
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2021Investigation of RNA metabolism through large-scale genetic interaction profiling in yeast., Nucleic Acids Res 2021 09; 49(15): 8535-8555.
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2021Attenuation of clinical and immunological outcomes during SARS-CoV-2 infection by ivermectin., EMBO Mol Med 2021 Aug; 13(8): e14122.
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2021Multitrait GWAS to connect disease variants and biological mechanisms., PLoS Genet 2021 Aug; 17(8): e1009713.
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2021Identification of the asymptomatic Plasmodium falciparum and Plasmodium vivax gametocyte reservoir under different transmission intensities., PLoS Negl Trop Dis 2021 08; 15(8): e0009672.
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2021Ongoing diphtheria outbreak in Yemen: a cross-sectional and genomic epidemiology study., Lancet Microbe 2021 Aug; 2(8): e386-e396.
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2021Peptoniphilus nemausensis sp. nov. A new Gram-positive anaerobic coccus isolated from human clinical samples, an emendated description of the genus Peptoniphilus and an evaluation of the taxonomic status of Peptoniphilus species with not validly published names., Syst Appl Microbiol 2021 Jul; 44(5): 126235.
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2021Dynamics of extended-spectrum beta-lactamase-producing Enterobacterales colonization in long-term carriers following travel abroad., Microb Genom 2021 Jul; 7(7): .
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2021Author Correction: Emergence and clonal expansion of in vitro artemisinin-resistant Plasmodium falciparum kelch13 R561H mutant parasites in Rwanda., Nat Med 2021 Jun; 27(6): 1113-1115.
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2021Megakaryocyte production is sustained by direct differentiation from erythromyeloid progenitors in the yolk sac until midgestation., Immunity 2021 May; (): .
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2021Identification of Umbre Orthobunyavirus as a Novel Zoonotic Virus Responsible for Lethal Encephalitis in 2 French Patients With Hypogammaglobulinemia, Clinical Infectious Diseases, 2021, 72 (10), pp.1701-1708. ⟨10.1093/cid/ciaa308⟩.
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2021Functional Genomic and Biochemical Analysis Reveals Pleiotropic Effect of Congo Red on Aspergillus fumigatus., mBio 2021 May; 12(3): .
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2021Ser/Thr Kinase-Dependent Phosphorylation of the Peptidoglycan Hydrolase CwlA Controls Its Export and Modulates Cell Division in Clostridioides difficile., mBio 2021 May; 12(3): .
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2021A third purine biosynthetic pathway encoded by aminoadenine-based viral DNA genomes, Science, 2021, 372 (6541), pp.516-520. ⟨10.1126/science.abe6494⟩.
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2021RNase R is associated in a functional complex with the RhpA DEAD-box RNA helicase in Helicobacter pylori., Nucleic Acids Res 2021 49:5249-5264.
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2021Phylogenetic analysis of Harmonin homology domains., BMC Bioinformatics 2021 Apr; 22(1): 190.
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2021The virome of Rhipicephalus, Dermacentor and Haemaphysalis ticks from Eastern Romania includes novel viruses with potential relevance for public health., Transbound Emerg Dis 2022 May; 69(3): 1387-1403.
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2021Prior infection by seasonal coronaviruses, as assessed by serology, does not prevent SARS-CoV-2 infection and disease in children, France, April to June 2020., Euro Surveill 2021 Apr; 26(13): .
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2021Reclassification of Haloactinobacterium glacieicola as Occultella glacieicola gen. nov., comb. nov., of Haloactinobacterium album as Ruania alba comb. nov, with an emended description of the genus Ruania, recognition that the genus names Haloactinobacterium and Ruania are heterotypic synonyms and description of Occultella aeris sp. nov., a halotolerant isolate from surface soil sampled at an ancient copper smelter., Int J Syst Evol Microbiol 2021 Apr; 71(4): .
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2021Pseudomonas carbonaria sp. nov., isolated from charcoal., Int J Syst Evol Microbiol 2021 Apr; 71(4): .
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2021Estimated impact of tafenoquine for Plasmodium vivax control and elimination in Brazil: A modelling study., PLoS Med 2021 04; 18(4): e1003535.
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