Timeline

Romain Koszul
Head of Structure
16 Nov 2020
publication

Computer vision for pattern detection in chromosome contact maps.

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21 Jul 2020
software

instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder

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21 Jul 2020
software

Chromosight: A computer vision program for pattern detection in chromosome contact maps

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21 Jul 2020
software

Serpentine: a flexible 2D binning method for differential Hi-C analysis

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21 Jul 2020
project

ERC-2017-COG Synarchic – Investigating the functional architecture of microbial genomes with synthetic approaches

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18 Jun 2020
publication

instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder.

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01 Jun 2020
publication

Serpentine: a flexible 2D binning method for differential Hi-C analysis.

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20 Mar 2020
publication

Chromosome organization by a conserved condensin-ParB system in the actinobacterium Corynebacterium glutamicum.

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28 Jan 2020
publication

Regulation of Cohesin-Mediated Chromosome Folding by Eco1 and Other Partners

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18 Dec 2019
publication

Perspectives on Chromosome Organization

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03 Oct 2019
publication

FACT mediates cohesin function on chromatin

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20 Aug 2019
publication

MetaTOR: A Computational Pipeline to Recover High-Quality Metagenomic Bins From Mammalian Gut Proximity-Ligation (meta3C) Libraries

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30 May 2019
publication

Condensin-Mediated Chromosome Folding and Internal Telomeres Drive Dicentric Severing by Cytokinesis

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21 Feb 2019
event

François Jacob Conference

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05 Feb 2019
publication

Dynamic Processing of Displacement Loops during Recombinational DNA Repair

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15 Oct 2018
publication

Tridimensional infiltration of DNA viruses into the host genome shows preferential contact with active chromatin

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18 Sep 2018
publication

Generation of a Metagenomics Proximity Ligation 3C Library of a Mammalian Gut Microbiota

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03 Aug 2018
publication

Kinetic Signature of Cooperativity in the Irreversible Collapse of a Polymer

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16 Jul 2018
publication

Characterizing meiotic chromosomes’ structure and pairing using a designer sequence optimized for Hi-C

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24 Feb 2018
publication

A Proximity Ligation-Based Method for Quantitative Measurement of D-Loop Extension in S. cerevisiae

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10 Jan 2018
publication

Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins

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20 Jul 2017
publication

Cohesins and condensins orchestrate the 4D dynamics of yeast chromosomes during the cell cycle

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12 Jun 2017
publication

Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes

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10 Mar 2017
publication

3D organization of synthetic and scrambled chromosomes

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10 Mar 2017
publication

Deep functional analysis of synII, a 770-kilobase synthetic yeast chromosome

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17 Feb 2017
publication

Scaffolding bacterial genomes and probing host-virus interactions in gut microbiome by proximity ligation (chromosome capture) assay

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01 Jan 2017
publication

Generation and Analysis of Chromosomal Contact Maps of Bacteria

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08 Jun 2016
publication

Beyond the bounds of evolution: Synthetic chromosomes… How and what for?

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22 Apr 2016
publication

A checkpoint control orchestrates the replication of the two chromosomes of Vibrio cholerae.

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05 Jan 2016
publication

Evidence for actin dual role in regulating chromosome organization and dynamics in yeast

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01 Jan 2016
publication

Generation and Analysis of Chromosomal Contact Maps of Yeast Species

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24 Nov 2015
publication

The 3D folding of metazoan genomes correlates with the association of similar repetitive elements

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19 Nov 2015
publication

Metagenome Analysis Exploiting High-Throughput Chromosome Conformation Capture (3C) Data

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09 Nov 2015
project

ERC-2010-StG Interaction dynamique entre chromosomes eucaryotes : impact sur la stabilité du génome (DICIG)

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01 Oct 2015
publication

Conception et synthèse de néochromosomes

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23 Sep 2015
publication

Spatial reorganization of telomeres in long-lived quiescent cells

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11 Sep 2015
software

GRAAL: genome assembly from chromosome contact frequencies

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02 Sep 2015
publication

Genome-wide replication landscape of Candida glabrata

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21 Aug 2015
publication

Filling the gap: Micro-C accesses the nucleosomal fiber at 100-1000 bp resolution

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15 Jun 2015
software

META3C (MetaHiC), metaTOR

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11 May 2015
team

Spatial Regulation of Genomes

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29 Apr 2015
publication

Contact genomics: scaffolding and phasing (meta)genomes using chromosome 3D physical signatures

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25 Jan 2015
publication

Condensin- and Replication-Mediated Bacterial Chromosome Folding and Origin Condensation Revealed by Hi-C and Super-resolution Imaging

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17 Dec 2014
publication

Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms

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17 Dec 2014
publication

High-quality genome (re)assembly using chromosomal contact data

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01 Jul 2014
publication

Gateway to genetic exchange? DNA double-strand breaks in the bdelloid rotifer Adineta vaga submitted to desiccation

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07 Apr 2014
publication

Filling annotation gaps in yeast genomes using genome-wide contact maps

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27 Mar 2014
publication

Total synthesis of a functional designer eukaryotic chromosome

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26 Mar 2014
publication

Purification of G1 daughter cells from different Saccharomycetes species through an optimized centrifugal elutriation procedure

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21 Jul 2013
publication

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

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30 Aug 2012
publication

Normalization of a chromosomal contact map

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30 Aug 2012
publication

A predictive computational model of the dynamic 3D interphase yeast nucleus

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01 Jun 2012
publication

The chiasmatype theory. A new interpretation of the maturation divisions. 1909

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01 Jun 2012
publication

The centenary of Janssens’s chiasmatype theory

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23 Oct 2009
publication

Dynamic chromosome movements during meiosis: a way to eliminate unwanted connections?

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01 Jan 2009
publication

Real-time imaging of meiotic chromosomes in Saccharomyces cerevisiae

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02 Dec 2008
publication

A prominent role for segmental duplications in modeling eukaryotic genomes

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26 Sep 2008
publication

Csm4, in collaboration with Ndj1, mediates telomere-led chromosome dynamics and recombination during yeast meiosis

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05 Sep 2008
publication

Segmental duplications arise from Pol32-dependent repair of broken forks through two alternative replication-based mechanisms

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27 Jun 2008
publication

Meiotic chromosomes move by linkage to dynamic actin cables with transduction of force through the nuclear envelope

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19 Feb 2006
publication

Stability of large segmental duplications in the yeast genome

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31 Aug 2004
publication

Large-scale exploration of growth inhibition caused by overexpression of genomic fragments in Saccharomyces cerevisiae

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01 Jul 2004
publication

Genome evolution in yeasts

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18 Dec 2003
publication

Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments

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16 Jan 2003
publication

The complete mitochondrial genome sequence of the pathogenic yeast Candida (Torulopsis) glabrata

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