GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 90107,
label: 'Najwa Taib',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/05/research_pasteur-photo_ntaib-150x150.jpeg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
var biggest_node_size = 0;
N=7
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 148554,
label: 'PROJECT: ANR-METHEVOL: Characterization of new players and evolutionary transitions in the methane metabolism, a backbone in the evolution of the archaeal domain',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/anr-methevol-characterization-of-new-players-and-evolutionary-transitions-in-the-methane-metabolism-a-backbone-in-the-evolution-of-the-archaeal-domain/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 90107148554,
size: 0.5,
source: 90107,
target: 148554,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 90107) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 14855490107,
size: 0.5,
source: 148554,
target: 90107 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 57997,
label: 'Guillaume Borrel',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/11/research.pasteur.fr_photo-guillaume-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/guillaume-borrel/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 14855457997,
size: 0.5,
source: 148554,
target: 57997 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 148550,
label: 'PROJECT: ANR-VIROMET-Uncovering the VIRome of archaeal METhanogens',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/anr-viromet/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 90107148550,
size: 0.5,
source: 90107,
target: 148550,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4287,
label: 'Mart Krupovic',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/05/research_pasteur-mart_krupovic-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/mart-krupovic/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1485504287,
size: 0.5,
source: 148550,
target: 4287 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 126125,
label: 'Diana Paola Baquero Uriza',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2020/01/research_pasteur-untitled-2-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/diana-paola-baquero-uriza/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 148550126125,
size: 0.5,
source: 148550,
target: 126125 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 57997) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 14855057997,
size: 0.5,
source: 148550,
target: 57997 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 90107) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 14855090107,
size: 0.5,
source: 148550,
target: 90107 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4286,
label: 'Simonetta Gribaldo',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/10/research_pasteur-photo-simo2-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/simonetta-gribaldo/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1485504286,
size: 0.5,
source: 148550,
target: 4286 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 140817,
label: 'COURSE: Introduction to Molecular Phylogenetics – ENS Paris',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/course/introduction-to-molecular-phylogenetics/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 90107140817,
size: 0.5,
source: 90107,
target: 140817,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 7769,
label: 'Catherine Dauga',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_fig34-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/catherine-dauga/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1408177769,
size: 0.5,
source: 140817,
target: 7769 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 2879,
label: 'Olivier Gascuel',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/03/research_pasteur-olivier-gascuel-oliviergascuel-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/olivier-gascuel/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1408172879,
size: 0.5,
source: 140817,
target: 2879 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 37634,
label: 'Julien Guglielmini',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_julien-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/julien-guglielmini/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 14081737634,
size: 0.5,
source: 140817,
target: 37634 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 7759,
label: 'Alexis Criscuolo',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_alexiscriscuolo-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/alexis-criscuolo/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1408177759,
size: 0.5,
source: 140817,
target: 7759 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 57758,
label: 'Frédéric Lemoine',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/11/research_pasteur-frederic-lemoine-lemoine-frederic-26-small-crop-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/frederic-lemoine/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 14081757758,
size: 0.5,
source: 140817,
target: 57758 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 57911,
label: 'Anna Zhukova',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/11/research_pasteur-anna-zhukova-anna3-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/anna-zhukova/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 14081757911,
size: 0.5,
source: 140817,
target: 57911 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 90107) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 14081790107,
size: 0.5,
source: 140817,
target: 90107 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 134788,
label: 'COURSE: Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/course/introduction-a-la-phylogenie-moleculaire-concepts-methodes-et-interpretation/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 90107134788,
size: 0.5,
source: 90107,
target: 134788,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 2879) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1347882879,
size: 0.5,
source: 134788,
target: 2879 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 57758) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 13478857758,
size: 0.5,
source: 134788,
target: 57758 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 37634) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 13478837634,
size: 0.5,
source: 134788,
target: 37634 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 7759) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1347887759,
size: 0.5,
source: 134788,
target: 7759 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 57911) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 13478857911,
size: 0.5,
source: 134788,
target: 57911 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 90107) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 13478890107,
size: 0.5,
source: 134788,
target: 90107 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 7769) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1347887769,
size: 0.5,
source: 134788,
target: 7769 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 76305,
label: 'PROJECT: ANR Fir-OM: Firmicutes with an outer membrane: toward new models to study the diderm/monoderm cell envelope transition',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/12/research.pasteur.fr_diapositive1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/project/anr-fir-om-firmicutes-with-an-outer-membrane-toward-new-models-to-study-the-didermmonoderm-cell-envelope-transition/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 9010776305,
size: 0.5,
source: 90107,
target: 76305,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4335,
label: 'Christophe Beloin',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_christophe2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/christophe-beloin/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 763054335,
size: 0.5,
source: 76305,
target: 4335 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4288,
label: '',
type: 'image',
url: '',
page_url: '',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 763054288,
size: 0.5,
source: 76305,
target: 4288 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 90107) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 7630590107,
size: 0.5,
source: 76305,
target: 90107 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 96437,
label: 'Daniela Megrian',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/10/research_pasteur-application-form-ppu-2016-2017-megrian-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/daniela-megrian/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 7630596437,
size: 0.5,
source: 76305,
target: 96437 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4286) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 763054286,
size: 0.5,
source: 76305,
target: 4286 });
// adding node
var x_node = Math.cos(2 * 5 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 5 * Math.PI / N) * 10;
g.nodes.push({
id: 77304,
label: 'PROJECT: PTR OmNega: A multi-disciplinary investigation of the Negativicutes: atypical Firmicutes with LPS-outer membranes that inhabit the human gut',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/12/research.pasteur.fr_dsm-2008-57-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/project/a-multi-disciplinary-investigation-of-the-negativicutes-atypical-firmicutes-with-lps-outer-membranes-that-inhabit-the-human-gut/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 9010777304,
size: 0.5,
source: 90107,
target: 77304,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4335) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 773044335,
size: 0.5,
source: 77304,
target: 4335 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4288) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 773044288,
size: 0.5,
source: 77304,
target: 4288 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 90107) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 7730490107,
size: 0.5,
source: 77304,
target: 90107 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4286) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 773044286,
size: 0.5,
source: 77304,
target: 4286 });
// adding node
var x_node = Math.cos(2 * 6 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 6 * Math.PI / N) * 10;
g.nodes.push({
id: 24264,
label: 'TEAM: Evolutionary Biology of the Microbial Cell',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/evolutionary-biology-of-the-microbial-cell/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 9010724264,
size: 0.5,
source: 90107,
target: 24264,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 57997) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 2426457997,
size: 0.5,
source: 24264,
target: 57997 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 90107) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 2426490107,
size: 0.5,
source: 24264,
target: 90107 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 102796,
label: 'Nika Pende',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/02/research_pasteur-pende_foto-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/nika-pende/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 24264102796,
size: 0.5,
source: 24264,
target: 102796 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 102806,
label: 'Jerzy Witwinowski',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/02/research_pasteur-jw3-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/jerzy-witwinowski/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 24264102806,
size: 0.5,
source: 24264,
target: 102806 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 104871,
label: 'Courtney Thomas',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/03/research_pasteur-courtney-thomas-img-7636-1-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/courtney-thomas/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 24264104871,
size: 0.5,
source: 24264,
target: 104871 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4102,
label: 'To Nam Tham',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_tham-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/to-nam-tham/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 242644102,
size: 0.5,
source: 24264,
target: 4102 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 113642,
label: 'Caroline Binet',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/10/research_pasteur-njkyody3-2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/caroline-binet/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 24264113642,
size: 0.5,
source: 24264,
target: 113642 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 148650,
label: 'Basile Beaud',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2020/10/research_pasteur-8a951152-5fa0-4920-99f6-30c8a2ec3081-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/fr-basile-beaud/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 24264148650,
size: 0.5,
source: 24264,
target: 148650 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 152389,
label: 'Robert Smith',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/01/research_pasteur-robert-smith-picture-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/robert-smith/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 24264152389,
size: 0.5,
source: 24264,
target: 152389 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 126114,
label: 'Sofia Medvedeva',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/05/research_pasteur-sofia-medvedeva-photo-e1631627744382-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/sofia-medvedeva/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 24264126114,
size: 0.5,
source: 24264,
target: 126114 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 121034,
label: 'Pierre Garcia',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/02/research_pasteur-pierre-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/pierre-garcia/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 24264121034,
size: 0.5,
source: 24264,
target: 121034 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4286) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 242644286,
size: 0.5,
source: 24264,
target: 4286 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 6,
maxNodeSize: 35,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#999',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});