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2024Differential stress responsiveness determines intraspecies virulence heterogeneity and host adaptation in Listeria monocytogenes., Nat Microbiol 2024 Dec; 9(12): 3345-3361.
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2024Conservation of antiviral systems across domains of life reveals immune genes in humans., Cell Host Microbe 2024 Aug; (): .
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2024Impact of socioeconomic status on healthy immune responses in humans., Immunol Cell Biol 2024 Aug; 102(7): 618-629.
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2024Lack of association between classical HLA genes and asymptomatic SARS-CoV-2 infection., HGG Adv 2024 Jul; 5(3): 100300.
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2024Higher COVID-19 pneumonia risk associated with anti-IFN-α than with anti-IFN-ω auto-Abs in children., J Exp Med 2024 Feb; 221(2): .
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2024Smoking changes adaptive immunity with persistent effects., Nature 2024 Feb; 626(8000): 827-835.
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2023Environmental variation and genetic diversity contribute to population differences in immune responses to SARS-CoV-2 and COVID-19 risk., Genes Immun 2023 Dec; (): .
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2023Immune-response 3’UTR alternative polyadenylation quantitative trait loci contribute to variation in human complex traits and diseases., Nat Commun 2023 Dec; 14(1): 8347.
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2023Unveiling Candida albicans intestinal carriage in healthy volunteers: the role of micro- and mycobiota, diet, host genetics and immune response., Gut Microbes 2023 Dec; 15(2): 2287618.
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2023Autoantibodies against type I IFNs in humans with alternative NF-κB pathway deficiency., Nature 2023 Nov; 623(7988): 803-813.
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2012Genetics. Gene losses in the human genome, Science 2012 Feb;335(6070):806-7.
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2012Mitochondrial origin of the matrilocal Mosuo people in China, Mitochondrial DNA 2012 Feb;23(1):13-9.
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2011IL28B alleles associated with poor hepatitis C virus (HCV) clearance protect against inflammation and fibrosis in patients infected with non-1 HCV genotypes, Hepatology 2012 Feb;55(2):384-94.
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2011Evolutionary genetic dissection of human interferons, J. Exp. Med. 2011 Dec;208(13):2747-59.
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2011Y-chromosome O3 haplogroup diversity in Sino-Tibetan populations reveals two migration routes into the eastern Himalayas, Ann. Hum. Genet. 2012 Jan;76(1):92-9.
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2011Population variation in NAIP functional copy number confers increased cell death upon Legionella pneumophila infection, Hum. Immunol. 2012 Feb;73(2):196-200.
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2011Recombination networks as genetic markers in a human variation study of the Old World, Hum. Genet. 2012 Apr;131(4):601-13.
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2011Recombination gives a new insight in the effective population size and the history of the old world human populations, Mol. Biol. Evol. 2012 Jan;29(1):25-30.
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2011Human migration through bottlenecks from Southeast Asia into East Asia during Last Glacial Maximum revealed by Y chromosomes, PLoS ONE 2011;6(8):e24282.
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2011Genetic ancestry and indigenous heritage in a Native American descendant community in Bermuda, Am. J. Phys. Anthropol. 2011 Nov;146(3):392-405.
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2011The selective footprints of viral pressures at the human RIG-I-like receptor family, Hum. Mol. Genet. 2011 Nov;20(22):4462-74.
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2011Evolution of the TIR domain-containing adaptors in humans: swinging between constraint and adaptation, Mol. Biol. Evol. 2011 Nov;28(11):3087-97.
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2011Lactase persistence in central Asia: phenotype, genotype, and evolution, Hum. Biol. 2011 Jun;83(3):379-92.
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2011Functional characterization of naturally occurring genetic variants in the human TLR1-2-6 gene family, Hum. Mutat. 2011 Jun;32(6):643-52.
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2011Parallel evolution of genes and languages in the Caucasus region, Mol. Biol. Evol. 2011 Oct;28(10):2905-20.
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2011HTLV-2B strains, similar to those found in several Amerindian tribes, are endemic in central African Bakola Pygmies, J. Infect. Dis. 2011 May;203(9):1316-23.
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2011An updated tree of Y-chromosome Haplogroup O and revised phylogenetic positions of mutations P164 and PK4, Eur. J. Hum. Genet. 2011 Sep;19(9):1013-5.
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2011Evolutionary genetics evidence of an essential, nonredundant role of the IFN-γ pathway in protective immunity, Hum. Mutat. 2011 Jun;32(6):633-42.
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2011Human TLRs and IL-1Rs in host defense: natural insights from evolutionary, epidemiological, and clinical genetics, Annu. Rev. Immunol. 2011;29:447-91.
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2010Positive selection on mitochondrial M7 lineages among the Gelong people in Hainan, J. Hum. Genet. 2011 Mar;56(3):253-6.
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2010The role played by natural selection on Mendelian traits in humans, Ann. N. Y. Acad. Sci. 2010 Dec;1214:1-17.
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2010Influences of history, geography, and religion on genetic structure: the Maronites in Lebanon, Eur. J. Hum. Genet. 2011 Mar;19(3):334-40.
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2010A mitochondrial revelation of early human migrations to the Tibetan Plateau before and after the last glacial maximum, Am. J. Phys. Anthropol. 2010 Dec;143(4):555-69.
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2010Ancient DNA from European early neolithic farmers reveals their near eastern affinities, PLoS Biol. 2010;8(11):e1000536.
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2010Insights into the demographic history of African Pygmies from complete mitochondrial genomes, Mol. Biol. Evol. 2011 Feb;28(2):1099-110.
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2010In the heartland of Eurasia: the multilocus genetic landscape of Central Asian populations, Eur. J. Hum. Genet. 2011 Feb;19(2):216-23.
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2010Genetic heritage and native identity of the Seaconke Wampanoag tribe of Massachusetts, Am. J. Phys. Anthropol. 2010 Aug;142(4):579-89.
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2010Interferon gamma receptor 2 gene variants are associated with liver fibrosis in patients with chronic hepatitis C infection, Gut 2010 Aug;59(8):1120-6.
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2010Formulating a historical and demographic model of recent human evolution based on resequencing data from noncoding regions, PLoS ONE 2010;5(4):e10284.
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2010Strong maternal Khoisan contribution to the South African coloured population: a case of gender-biased admixture, Am. J. Hum. Genet. 2010 Apr;86(4):611-20.
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2010Parkinson’s disease-related LRRK2 G2019S mutation results from independent mutational events in humans, Hum. Mol. Genet. 2010 May;19(10):1998-2004.
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2010Human herpesvirus 8, Southern Siberia, Emerging Infect. Dis. 2010 Mar;16(3):580-2.
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2009Sexual inequality in tuberculosis, PLoS Med. 2009 Dec;6(12):e1000199.
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2009From evolutionary genetics to human immunology: how selection shapes host defence genes, Nat. Rev. Genet. 2010 Jan;11(1):17-30.
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2009Study of human RIG-I polymorphisms identifies two variants with an opposite impact on the antiviral immune response, PLoS ONE 2009;4(10):e7582.
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2009Evolutionary trajectories of primate genes involved in HIV pathogenesis, Mol. Biol. Evol. 2009 Dec;26(12):2865-75.
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2009Genetic diversity and the emergence of ethnic groups in Central Asia, BMC Genet. 2009;10:49.
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2009Geographical structure of the Y-chromosomal genetic landscape of the Levant: a coastal-inland contrast, Ann. Hum. Genet. 2009 Nov;73(Pt 6):568-81.
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2009Evolutionary dynamics of human Toll-like receptors and their different contributions to host defense, PLoS Genet. 2009 Jul;5(7):e1000562.
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2009Genetic and demographic implications of the Bantu expansion: insights from human paternal lineages, Mol. Biol. Evol. 2009 Jul;26(7):1581-9.
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2009Inferring the demographic history of African farmers and pygmy hunter-gatherers using a multilocus resequencing data set, PLoS Genet. 2009 Apr;5(4):e1000448.
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2009Signatures of purifying and local positive selection in human miRNAs, Am. J. Hum. Genet. 2009 Mar;84(3):316-27.
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2009Origins and genetic diversity of pygmy hunter-gatherers from Western Central Africa, Curr. Biol. 2009 Feb;19(4):312-8.
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2009Evolutionary genetics as a tool to target genes involved in phenotypes of medical relevance, Evol Appl 2009 Feb;2(1):71-80.
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2008The genetic legacy of religious diversity and intolerance: paternal lineages of Christians, Jews, and Muslims in the Iberian Peninsula, Am. J. Hum. Genet. 2008 Dec;83(6):725-36.
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2008A novel 154-bp deletion in the human mitochondrial DNA control region in healthy individuals, Hum. Mutat. 2008 Dec;29(12):1387-91.
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2008Identifying genetic traces of historical expansions: Phoenician footprints in the Mediterranean, Am. J. Hum. Genet. 2008 Nov;83(5):633-42.
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2008Dynamic nature of the proximal AZFc region of the human Y chromosome: multiple independent deletion and duplication events revealed by microsatellite analysis, Hum. Mutat. 2008 Oct;29(10):1171-80.
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2008Sex-specific genetic structure and social organization in Central Asia: insights from a multi-locus study, PLoS Genet. 2008;4(9):e1000200.
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2008Maximum-likelihood estimation of site-specific mutation rates in human mitochondrial DNA from partial phylogenetic classification, Genetics 2008 Nov;180(3):1511-24.
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2008Multiple advantageous amino acid variants in the NAT2 gene in human populations, PLoS ONE 2008;3(9):e3136.
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2008Protective role of DC-SIGN (CD209) neck-region alleles with <5 repeat units in HIV-1 transmission, J. Infect. Dis. 2008 Jul;198(1):68-71.
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2008Genetic traces of east-to-west human expansion waves in Eurasia, Am. J. Phys. Anthropol. 2008 Jul;136(3):309-17.
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2008The dawn of human matrilineal diversity, Am. J. Hum. Genet. 2008 May;82(5):1130-40.
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2008Y-chromosomal diversity in Lebanon is structured by recent historical events, Am. J. Hum. Genet. 2008 Apr;82(4):873-82.
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2008Natural selection has driven population differentiation in modern humans, Nat. Genet. 2008 Mar;40(3):340-5.
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2008Maternal traces of deep common ancestry and asymmetric gene flow between Pygmy hunter-gatherers and Bantu-speaking farmers, Proc. Natl. Acad. Sci. U.S.A. 2008 Feb;105(5):1596-601.
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2008Demeter’s legacy: rapid changes to our genome imposed by diet, Trends Ecol. Evol. (Amst.) 2008 Feb;23(2):56-9.
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2007Population genetic diversity of the NAT2 gene supports a role of acetylation in human adaptation to farming in Central Asia, Eur. J. Hum. Genet. 2008 Feb;16(2):243-51.
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2007Immunology in natura: clinical, epidemiological and evolutionary genetics of infectious diseases, Nat. Immunol. 2007 Nov;8(11):1165-71.
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2007Promoter and neck region length variation of DC-SIGN is not associated with susceptibility to tuberculosis in Tunisian patients, Hum. Immunol. 2007 Nov;68(11):908-12.
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2007TLR3 deficiency in patients with herpes simplex encephalitis, Science 2007 Sep;317(5844):1522-7.
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2007The Genographic Project public participation mitochondrial DNA database, PLoS Genet. 2007 Jun;3(6):e104.
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2006Length variation of DC-SIGN and L-SIGN neck-region has no impact on tuberculosis susceptibility, Hum. Immunol. 2007 Feb;68(2):106-12.
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2006DC-SIGNR neck-region polymorphisms and HIV-1 susceptibility: From population stratification to a possible advantage of the 7/5 heterozygous genotype, J. Infect. Dis. 2006 Oct;194(8):1184-5; author reply 1185-7.
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2006Evolutionary insights into the high worldwide prevalence of MBL2 deficiency alleles, Hum. Mol. Genet. 2006 Sep;15(17):2650-8.
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2006Towards a crucial role for DC-SIGN in tuberculosis and beyond, Trends Microbiol. 2006 Sep;14(9):383-7.
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2006Sub-Saharan African coding sequence variation and haplotype diversity at the NAT2 gene, Hum. Mutat. 2006 Jul;27(7):720.
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2006DC-SIGN interacts with Mycobacterium leprae but sequence variation in this lectin is not associated with leprosy in the Pakistani population, Hum. Immunol. 2006 Jan-Feb;67(1-2):102-7.
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2006Horizontal transfer of a virulence operon to the ancestor of Mycobacterium tuberculosis, Mol. Biol. Evol. 2006 Jun;23(6):1129-35.
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2006Deciphering the ancient and complex evolutionary history of human arylamine N-acetyltransferase genes, Am. J. Hum. Genet. 2006 Mar;78(3):423-36.
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2006The matrilineal ancestry of Ashkenazi Jewry: portrait of a recent founder event, Am. J. Hum. Genet. 2006 Mar;78(3):487-97.
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2006Promoter variation in the DC-SIGN-encoding gene CD209 is associated with tuberculosis, PLoS Med. 2006 Feb;3(2):e20.
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2005The heritage of pathogen pressures and ancient demography in the human innate-immunity CD209/CD209L region, Am. J. Hum. Genet. 2005 Nov;77(5):869-86.
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2005The Tyr978X BRCA1 mutation: occurrence in non-Jewish Iranians and haplotype in French-Canadian and non-Ashkenazi Jews, Fam. Cancer 2005;4(2):85-8.
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2004The genetic or mythical ancestry of descent groups: lessons from the Y chromosome, Am. J. Hum. Genet. 2004 Dec;75(6):1113-6.
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2004MtDNA evidence for a genetic bottleneck in the early history of the Ashkenazi Jewish population, Eur. J. Hum. Genet. 2004 May;12(5):355-64.
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2004Where west meets east: the complex mtDNA landscape of the southwest and Central Asian corridor, Am. J. Hum. Genet. 2004 May;74(5):827-45.
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2004Y-chromosomal STR haplotypes in Berber and Arabic-speaking populations from Morocco, Forensic Sci. Int. 2004 Feb;140(1):113-5.
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2004Contrasting patterns of Y chromosome variation in Ashkenazi Jewish and host non-Jewish European populations, Hum. Genet. 2004 Mar;114(4):354-65.
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2004Y chromosome polymorphisms in medicine, Ann. Med. 2004;36(8):573-83.
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2003From surnames to the history of Y chromosomes: the Sardinian population as a paradigm, Eur. J. Hum. Genet. 2003 Oct;11(10):802-7.
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2003Male reproductive function and the human Y chromosome: is selection acting on the Y?, Reprod. Biomed. Online 2003 Jul-Aug;7(1):17-23.
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2003Genetic structure of Mediterranean populations revealed by Y-chromosome haplotype analysis, Am. J. Phys. Anthropol. 2003 Jun;121(2):157-71.
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2003Y chromosome haplogroups: a correlation with testicular dysgenesis syndrome?, APMIS 2003 Jan;111(1):106-13; discussion 114.
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2002Effects of transmission of Y chromosome AZFc deletions, Lancet 2002 Oct;360(9341):1222-4.
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2002The fingerprint of phantom mutations in mitochondrial DNA data, Am. J. Hum. Genet. 2002 Nov;71(5):1150-60.
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2002Y-chromosome analysis in Egypt suggests a genetic regional continuity in Northeastern Africa, Hum. Biol. 2002 Oct;74(5):645-58.
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2001The Human Y Chromosome: The Biological Role of a “Functional Wasteland”, J. Biomed. Biotechnol. 2001;1(1):18-24.