Timeline

Jean-Yves Tinevez
Research Engineer
12 Jul 2022
course

Image Processing for Electron Microscopy – CryoTomography

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28 Jun 2022
news

Tracking cells with machine-learning and deep-learning segmentation algorithms in TrackMate

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02 Jun 2022
publication

TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines.

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07 Apr 2022
publication

Best Fit 3D Basilar Membrane Reconstruction to Routinely Assess the Scalar Position of the Electrode Array after Cochlear Implantation.

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23 Mar 2022
publication

Evolutionary conservation of centriole rotational asymmetry in the human centrosome.

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25 Feb 2022
publication

Molecular organization and mechanics of single vimentin filaments revealed by super-resolution imaging.

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05 Oct 2021
publication

Listeriolysin S: A bacteriocin from Listeria monocytogenes that induces membrane permeabilization in a contact-dependent manner.

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11 Aug 2021
course

Bioinformatics program for PhD students 2021-2022

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05 Aug 2021
publication

Dynamic spatiotemporal coordination of neural stem cell fate decisions occurs through local feedback in the adult vertebrate brain.

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02 Jul 2021
publication

LocalZProjector and DeProj: a toolbox for local 2D projection and accurate morphometrics of large 3D microscopy images.

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01 Jan 2021
publication

Highlights from the 2016-2020 NEUBIAS training schools for Bioimage Analysts: a success story and key asset for analysts and life scientists.

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24 Sep 2020
course

Bioinformatics program for PhD students 2020-2021

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05 Aug 2020
event

BioImage Informatics 2020

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01 May 2020
publication

Shigella impairs human T lymphocyte responsiveness by hijacking actin cytoskeleton dynamics and T cell receptor vesicular trafficking.

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11 Feb 2020
course

Microscopy – Principles and Applications of Fluorescence Microscopy

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01 Jan 2020
publication

Automated cell tracking using StarDist and TrackMate.

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01 Nov 2019
publication

Shigella-mediated oxygen depletion is essential for intestinal mucosa colonization.

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18 Oct 2019
publication

The NEMO Dots Assembly: Single-Particle Tracking and Analysis

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05 Jun 2019
event

Amira Software Workshop – Institut Pasteur – 19th of June 2019

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08 Apr 2019
news

Image Analysis Open-Desks – every two Thursdays.

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16 Jan 2019
event

Hands-on Imaris – Microscopy images analysis – 15th of February 2019.

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14 Jan 2019
publication

Altered spinogenesis in iPSC-derived cortical neurons from patients with autism carrying de novo SHANK3 mutations.

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01 Jan 2019
publication

Imaging of Red-Shifted Light From Bioluminescent Tumors Using Fluorescence by Unbound Excitation From Luminescence.

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03 Dec 2018
publication

Bidirectional intraflagellar transport is restricted to two sets of microtubule doublets in the trypanosome flagellum.

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22 Nov 2018
event

PhD program course – Fall 2018 – Introduction to image analysis.

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22 Aug 2018
publication

Anisotropic organization of circumferential actomyosin characterizes hematopoietic stem cells emergence in the zebrafish.

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01 Jun 2018
publication

Fluorescence imaging host pathogen interactions: fifteen years benefit of hindsight….

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28 May 2018
event

Getting started with Icy – User-friendly Bioimage Analysis – 29th of June 2018.

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08 May 2018
publication

TIM-1 Ubiquitination Mediates Dengue Virus Entry.

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19 Apr 2018
publication

MUB40 Binds to Lactoferrin and Stands as a Specific Neutrophil Marker.

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12 Apr 2018
software

MaMuT

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29 Mar 2018
publication

Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb.

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29 Nov 2017
software

TrackMate

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15 Nov 2017
team

Image Analysis Hub

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17 Aug 2017
team

Photonic BioImaging (UTechS PBI)

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01 Mar 2017
publication

The infectious hypoxia: occurrence and causes during Shigella infection.

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27 Feb 2017
event

Luxendo InVi-SPIM microscope demo @ Imagopole – March 13th to the 17th.

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15 Feb 2017
publication

TrackMate: An open and extensible platform for single-particle tracking.

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22 Jun 2016
publication

Object Segmentation and Ground Truth in 3D Embryonic Imaging.

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10 Oct 2015
publication

Three-dimensional Quantification of Dendritic Spines from Pyramidal Neurons Derived from Human Induced Pluripotent Stem Cells.

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07 Sep 2015
project

PTR 496 – Investigating the reciprocal relationship between macrophage inflammasome activity and intracellular Leishmania infection

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23 Jun 2015
publication

Bioimage analysis of Shigella infection reveals targeting of colonic crypts.

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27 Feb 2015
publication

Spatially resolved contrast measurement of diffractive micromirror arrays

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25 Feb 2015
project

Development and Application of new Molecular Probes

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25 Jan 2015
publication

Spatio-angular light control in microscopes using micro mirror arrays

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25 Jan 2015
publication

A new method to achieve tens of nm axial super-localisation based on conical diffraction PSF shaping

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28 Aug 2014
publication

Conical diffraction as a versatile building block to implement new imaging modalities for superresolution in fluorescence microscopy

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01 Apr 2014
publication

Msx1 and Msx2 act as essential activators of Atoh1 expression in the murine spinal cord.

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15 Mar 2014
publication

In vitro characterization of Fluorescence by Unbound Excitation from Luminescence: broadening the scope of energy transfer.

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01 Mar 2014
publication

Objective comparison of particle tracking methods.

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20 Jan 2014
publication

TNF and IL-1 exhibit distinct ubiquitin requirements for inducing NEMO-IKK supramolecular structures.

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01 Jan 2014
publication

Conical diffraction illumination opens the way for low phototoxicity super-resolution imaging.

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01 May 2013
publication

A simple model for the fate of the cytokinesis midbody remnant: implications for remnant degradation by autophagy.

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21 Mar 2013
publication

Crumbs affects protein dynamics in anterior regions of the developing Drosophila embryo.

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08 Mar 2013
publication

Micro mirror arrays as high-resolution spatial light modulators for photoactivation and optogenetics

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28 Jun 2012
publication

Fiji: an open-source platform for biological-image analysis.

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27 Feb 2012
publication

[The mechanics of the cellular division or how to split a sphere into two?]

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01 Jan 2012
publication

A quantitative method for measuring phototoxicity of a live cell imaging microscope.

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15 Sep 2011
publication

Strategies of professional phagocytes in vivo: unlike macrophages, neutrophils engulf only surface-associated microbes.

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07 Aug 2011
publication

Polar actomyosin contractility destabilizes the position of the cytokinetic furrow.

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01 Nov 2009
publication

Harmonin-b, an actin-binding scaffold protein, is involved in the adaptation of mechanoelectrical transduction by sensory hair cells.

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21 Oct 2009
publication

Role of cortical tension in bleb growth.

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01 Mar 2009
publication

Irradiation damage to frog inner ear during synchrotron radiation tomographic investigation

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17 Aug 2007
publication

Unifying the various incarnations of active hair-bundle motility by the vertebrate hair cell

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