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© Research
Publication : Nature methods

Fiji: an open-source platform for biological-image analysis.

Team: Photonic BioImaging (UTechS PBI)
Team: Image Analysis Hub
Member: Jean-Yves Tinevez
Scientific Fields
Diseases
Organisms
Applications
Technique

Published in Nature methods - 28 Jun 2012

Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez JY, White DJ, Hartenstein V, Eliceiri K, Tomancak P, Cardona A,

Link to Pubmed [PMID] – 22743772

Link to DOI – 10.1038/nmeth.2019

Nat Methods 2012 Jun; 9(7): 676-82

Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.