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  • team
  • department
  • center
  • program_project
  • nrc
  • whocc
  • project
  • software
  • tool
  • patent
  • Administrative Staff
  • Assistant Professor
  • Associate Professor
  • Clinical Research Assistant
  • Full Professor
  • Graduate Student
  • Lab assistant
  • Non-permanent Researcher
  • Permanent Researcher
  • Pharmacist
  • PhD Student
  • Physician
  • Post-doc
  • Project Manager
  • Research Associate
  • Research Engineer
  • Retired scientist
  • Technician
  • Undergraduate Student
  • Veterinary
  • Visiting Scientist
  • Deputy Director of Center
  • Deputy Director of Department
  • Deputy Director of National Reference Center
  • Deputy Head of Facility
  • Director of Center
  • Director of Department
  • Director of Institute
  • Director of National Reference Center
  • Group Leader
  • Head of Facility
  • Head of Operations
  • Head of Structure
  • Honorary President of the Departement
  • Labex Coordinator
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Starting Date
14
Oct 2016
Ending Date
02
Oct 2018
Status
Ongoing
Members
5
Structures
2

About

New Generation Phylogeny.fr: Refactoring Phylogeny.fr for innovative phylogenetic services

Phylogeny.fr is one of the main server available today able to run phylogenetic analysis pipelines. In the context of scientific workflows, none of the workflow systems (such as Taverna, WINGS and Galaxy) and their associated repositories of tools and workflows (e.g., myexperiment.org, Galaxy tool sheds, …) provide runnable phylogenetic workflows.

In this project, we developed NGPhylogeny.fr, which provides a set of pre‐designed phylogenetic workflows adapted to different user needs. These workflows are built, stored and executed on a Galaxy server, and are made of a complete set of phylogenetic analytical tools encapsulated in Galaxy wrappers.

Team
  • C3BI – Institut Pasteur (Olivier Gascuel, Frédéric Lemoine, Olivia Doppelt‐Azeroual, Fabien Mareuil)
  • LRI (Sarah Cohen‐Boulakia)
  • LIRMM (Vincent Lefort)

Fundings