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Cours
Phylogenetics, Molecular Epidemiology and Phylodynamics – Montevideo 2021
This course was a part of IRL IFUMI project. Teachers Paul Bastide (PB ‐ IMAG, Montpellier, France) Gonzalo Bello (GB – Instituto Oswaldo Fiocruz, RJ, Brazil) Miraine Davila Felipe (MDF – UTC, Compiègne, France) […]
2021-12-03 09:00:00
2021-12-10 17:00:00
Europe/Paris
Phylogenetics, Molecular Epidemiology and Phylodynamics – Montevideo 2021
This course was a part of IRL IFUMI project. Teachers Paul Bastide (PB ‐ IMAG, Montpellier, France) Gonzalo Bello (GB – Instituto Oswaldo Fiocruz, RJ, Brazil) Miraine Davila Felipe (MDF – UTC, Compiègne, France) […]
Ave Julio Herrera y Reissig 565, 11300 Montevideo, Departamento de Montevideo, Uruguay
Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation
Ce cours a pour objectif d’enseigner les bases théoriques et pratiques nécessaires à la conduite d’analyses phylogénétiques. Les sessions théoriques seront consacrées aux bases du domaine (représentation et combinatoire des arbres, modèles d’évolution) et […]
2021-12-13 09:00:00
2021-12-17 19:00:00
Europe/Paris
Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation
Ce cours a pour objectif d’enseigner les bases théoriques et pratiques nécessaires à la conduite d’analyses phylogénétiques. Les sessions théoriques seront consacrées aux bases du domaine (représentation et combinatoire des arbres, modèles d’évolution) et […]
28 Rue du Dr Roux, Paris, France
Large phylogenies module (COVEME)
“Large phylogenies” is a half-day module withing the “Bioinformatics Workshop on Virus Evolution and Molecular Epidemiology” (VEME) workshop. This module aims discusses approaches to reconstruct large trees and to perform downstream cluster analyses on […]
2021-09-02 13:00:00
2021-09-02 18:00:00
Europe/Paris
Large phylogenies module (COVEME)
“Large phylogenies” is a half-day module withing the “Bioinformatics Workshop on Virus Evolution and Molecular Epidemiology” (VEME) workshop. This module aims discusses approaches to reconstruct large trees and to perform downstream cluster analyses on […]
Molecular evolution and phylogenetics module (IBT 2021 H3ABioNet)
The Molecular evolution and phylogenetics is a 4-session module of the Introduction to Bioinformatics Training 2021 (IBT) organised by Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3ABioNet) consortium. It […]
2021-09-28 09:00:00
2021-10-07 14:00:00
Europe/Paris
Molecular evolution and phylogenetics module (IBT 2021 H3ABioNet)
The Molecular evolution and phylogenetics is a 4-session module of the Introduction to Bioinformatics Training 2021 (IBT) organised by Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3ABioNet) consortium. It […]
Africa
Molecular evolution and phylogenetics module (IBT 2020 H3ABioNet)
The Molecular evolution and phylogenetics is a 4-session module of the Introduction to Bioinformatics Training 2020 (IBT) organised by Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3ABioNet) consortium. It […]
2020-07-28 09:00:00
2020-08-06 17:00:00
Europe/Paris
Molecular evolution and phylogenetics module (IBT 2020 H3ABioNet)
The Molecular evolution and phylogenetics is a 4-session module of the Introduction to Bioinformatics Training 2020 (IBT) organised by Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3ABioNet) consortium. It […]
Africa
minicourse Introduction to Phylogenetics – CentraleSupélec
The ‘Introduction to Phylogenetics’ was taught as a part of a course on mathematical modeling for biology for CentraleSupélec students. It introduced the mathematics and algorithms used for phylogenetic tree inference (with distance and […]
2018-12-18 13:45:00
2018-12-18 17:00:00
Europe/Paris
minicourse Introduction to Phylogenetics – CentraleSupélec
The ‘Introduction to Phylogenetics’ was taught as a part of a course on mathematical modeling for biology for CentraleSupélec students. It introduced the mathematics and algorithms used for phylogenetic tree inference (with distance and […]
Centralesupélec, Rue Joliot Curie, Gif-sur-Yvette, France
Introduction to Molecular Phylogenetics – ENS Paris
Introduction to Molecular Phylogenetics course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […]
2020-12-14 09:00:00
2020-12-18 18:00:00
Europe/Paris
Introduction to Molecular Phylogenetics – ENS Paris
Introduction to Molecular Phylogenetics course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […]
Ens Ulm, Rue d'Ulm, Paris, France
Behind Evolutionary Trees: Mathematics and Algorithms in Phylogenetics – Montevideo 2019
Evolutionary trees are used in many domains, to reveal the function of genes, study the outbreak of epidemics, and set up inventories of biodiversity and its decline, among other things. Phylogenetic software programs for […]
2019-10-22 09:00:00
2019-10-24 17:00:00
Europe/Paris
Behind Evolutionary Trees: Mathematics and Algorithms in Phylogenetics – Montevideo 2019
Evolutionary trees are used in many domains, to reveal the function of genes, study the outbreak of epidemics, and set up inventories of biodiversity and its decline, among other things. Phylogenetic software programs for […]
Institut Pasteur de Montevideo, Mataojo, Montevideo Montevideo Department, Uruguay
Mathematical and Computational methods for Phylogenetics and Evolutionary Epidemiology – Havana 2019
Mathematical and Computational concepts and models are essentials in new developments of the evolutionary studies related to outbreaks of infectious diseases pandemics. Predicting, assessing and controlling potential outbreaks are key aspects of the worldwide […]
2019-10-14 09:00:00
2019-10-18 16:00:00
Europe/Paris
Mathematical and Computational methods for Phylogenetics and Evolutionary Epidemiology – Havana 2019
Mathematical and Computational concepts and models are essentials in new developments of the evolutionary studies related to outbreaks of infectious diseases pandemics. Predicting, assessing and controlling potential outbreaks are key aspects of the worldwide […]
Institute of Tropical Medicine “Pedro Kourí” (IPK), Havana, Cuba
Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation
Ce cours a pour objectif de donner les bases théoriques et pratiques, ainsi que les bonnes pratiques nécessaires au démarrage de travaux en phylogénie et épidémiologie moléculaires. Les sessions théoriques donneront les bases du […]
2019-10-07 09:30:00
2019-11-11 17:30:00
Europe/Paris
Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation
Ce cours a pour objectif de donner les bases théoriques et pratiques, ainsi que les bonnes pratiques nécessaires au démarrage de travaux en phylogénie et épidémiologie moléculaires. Les sessions théoriques donneront les bases du […]
28 Rue du Dr Roux, Paris, France
Introduction à la phylogénie moléculaire
Ce cours d’introduction à la phylogénie a pour objectif d’apporter les connaissances théoriques et les bonnes pratiques d’analyse de données par les logiciels de phylogénie. Il est ouvert aux formations doctorales et aux professionnels […]
2019-02-18 09:00:00
2019-02-22 17:00:00
Europe/Paris
Introduction à la phylogénie moléculaire
Ce cours d’introduction à la phylogénie a pour objectif d’apporter les connaissances théoriques et les bonnes pratiques d’analyse de données par les logiciels de phylogénie. Il est ouvert aux formations doctorales et aux professionnels […]
28 Rue du Dr Roux, Paris, France
Scientific Programming in Python
The ever growing usage of high throughput technologies in Biology is revolutionizing the life sciences and profoundly changing its practices. Scripting languages are used on a daily basis in life science labs in order […]
2017-03-06 09:30:00
2017-03-18 17:00:00
Europe/Paris
Scientific Programming in Python
The ever growing usage of high throughput technologies in Biology is revolutionizing the life sciences and profoundly changing its practices. Scripting languages are used on a daily basis in life science labs in order […]
25 Rue du Dr Roux, 75015 Paris, France
Introduction to Python Programming
Python is often used to learn programming as it is very readable and easy to write. Python is a very popular language in bioinformatics where many programs and libraries are written in python. This […]
2018-06-04 09:30:00
2018-06-08 17:00:00
Europe/Paris
Introduction to Python Programming
Python is often used to learn programming as it is very readable and easy to write. Python is a very popular language in bioinformatics where many programs and libraries are written in python. This […]
25 Rue du Dr Roux, 75015 Paris, France
Introduction to data analysis
This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […]
2017-01-16 09:00:00
2017-02-17 13:00:00
Europe/Paris
Introduction to data analysis
This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […]
28 Rue du Docteur Roux, Paris, France
C3BI Course: Introduction to Molecular Phylogenetics – Hong Kong 2018
General Information: This introductory course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […]
2018-10-22 08:00:00
2018-10-27 19:00:00
Europe/Paris
C3BI Course: Introduction to Molecular Phylogenetics – Hong Kong 2018
General Information: This introductory course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […]
HKU-Pasteur Research Pole HKJC Building for Interdisciplinary Research 5 Sassoon Road, Pokfulam, Hong Kong
INTRODUCTION À LA PHYLOGÉNIE MOLÉCULAIRE : CONCEPTS, METHODES ET OUTILS
Nous proposons une formation classique à la phylogénie moléculaire avec des cours théoriques portant sur les trois méthodes de construction d’arbres phylogénétiques : distance, parcimonie et maximum de vraisemblance. Nous expliquerons les concepts généraux […]
2017-12-18 09:30:00
2017-12-22 17:30:00
Europe/Paris
INTRODUCTION À LA PHYLOGÉNIE MOLÉCULAIRE : CONCEPTS, METHODES ET OUTILS
Nous proposons une formation classique à la phylogénie moléculaire avec des cours théoriques portant sur les trois méthodes de construction d’arbres phylogénétiques : distance, parcimonie et maximum de vraisemblance. Nous expliquerons les concepts généraux […]
25-28 Rue du Dr Roux, 75015 Paris, France
Projets
Logiciel
CV
(EN)
Experience
since 2015, Paris FR | Research Engineer @ Institut Pasteur | phylodynamics, phylogeography |
2014-15, Bordeaux FR | Postdoc @ IBGC CNRS UMR 5095/U. of Bordeaux | modelling mitochondrial metabolism |
2011-14, Bordeaux FR | Doctoral researcher @ Inria/U. of Bordeaux/CNRS joint project-team MAGNOME | knowledge-based generalization and visualization for metabolic models |
2011, Cambridge, UK | Intern @ EMBL-EBI, Comp. Systems Neurobiology group | Kinetic Simulation Algorithm Ontology (KiSAO) and libKiSAO |
2010, Bordeaux, FR | Intern @ Inria/U. of Bordeaux/CNRS joint project-team MAGNOME | Magus genome annotation system |
2009, Cambridge, UK | Intern @ EMBL-EBI, Functional Genomics group | Experimental Factor Ontology extension of search in ArrayExpress |
2008-10, St. Petersburg, RU | Junior software developer @ SwiftTeams |
Education
2011-14 | PhD, Computer Science | University of Bordeaux, FR |
2005-10 | Specialist (BSc+MSc), Software Engineering & Math | St. Petersburg State University, RU |
2007-09 | Alumna, Software Engineering | Academy of Modern Software Engineering, RU |
Publications
Télécharger-
2024Integrating contact tracing data to enhance outbreak phylodynamic inference: a deep learning approach., Mol Biol Evol 2024 Nov; (): .
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2024Recent evolutionary origin and localized diversity hotspots of mammalian coronaviruses., Elife 2024 Aug; 13(): .
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2024Accurate Detection of Convergent Mutations in Large Protein Alignments with ConDor., Genome Biol Evol 2024 Mar; (): .
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2024The multiplicity of thioredoxin systems meets the specific lifestyles of Clostridia., PLoS Pathog 2024 Feb; 20(2): e1012001.
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2023Fast and Accurate Maximum-Likelihood Estimation of Multi-Type Birth-Death Epidemiological Models from Phylogenetic Trees., Syst Biol 2023 Sep; (): .
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2023Integrating full and partial genome sequences to decipher the global spread of canine rabies virus., Nat Commun 2023 Jul; 14(1): 4247.
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2023Modeling Drug Resistance Emergence and Transmission in HIV-1 in the UK., Viruses 2023 May; 15(6): .
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2022Deep learning from phylogenies to uncover the epidemiological dynamics of outbreaks., Nat Commun 2022 Jul; 13(1): 3896.
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2022BioSimulators: a central registry of simulation engines and services for recommending specific tools., Nucleic Acids Res 2022 May; (): .
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2022Genome-wide diversity of Zika virus: Exploring spatio-temporal dynamics to guide a new nomenclature proposal., Virus Evol 2022 ; 8(1): veac029.
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