Timeline
Alexis Criscuolo
Head of Structure
28 Sep 2023
publication
Increasing Prevalence of Artemisinin-Resistant HRP2-Negative Malaria in Eritrea
Read more20 Jun 2023
01 Apr 2023
publication
Paenibacillus auburnensis sp. nov. and Paenibacillus pseudetheri sp. nov., isolated from the rhizosphere of Zea mays
Read more01 Nov 2022
publication
Neobacillus rhizosphaerae sp. nov., isolated from the rhizosphere, and reclassification of Bacillus dielmonensis as Neobacillus dielmonensis comb. nov.
Read more08 Oct 2022
01 Oct 2022
23 Sep 2022
publication
Neonatal acquisition of extended-spectrum beta-lactamase-producing Enterobacteriaceae in the community of a low-income country (NeoLIC): protocol for a household cohort study in Moramanga, Madagascar.
Read more18 Sep 2022
11 Jul 2022
01 Jul 2022
14 Jun 2022
publication
A dual barcoding approach to bacterial strain nomenclature: Genomic taxonomy of Klebsiella pneumoniae strains
Read more09 May 2022
08 May 2022
01 May 2022
publication
Pseudoneobacillus rhizosphaerae gen. nov., sp. nov., isolated from maize root rhizosphere.
Read more26 Mar 2022
publication
In vitro and in silico parameters for precise cgMLST typing of Listeria monocytogenes.
Read more01 Jan 2022
01 Dec 2021
30 Nov 2021
01 Nov 2021
01 Oct 2021
publication
Paenibacillus allorhizosphaerae sp. nov., from soil of the rhizosphere of Zea mays.
Read more15 Sep 2021
05 Sep 2021
05 Sep 2021
01 Aug 2021
publication
Ongoing diphtheria outbreak in Yemen: a cross-sectional and genomic epidemiology study.
Read more17 Jul 2021
publication
Peptoniphilus nemausensis sp. nov. A new Gram-positive anaerobic coccus isolated from human clinical samples, an emendated description of the genus Peptoniphilus and an evaluation of the taxonomic status of Peptoniphilus species with not validly published names.
Read more12 Jun 2021
01 Jun 2021
publication
Author Correction: Emergence and clonal expansion of in vitro artemisinin-resistant Plasmodium falciparum kelch13 R561H mutant parasites in Rwanda.
Read more01 Apr 2021
01 Apr 2021
publication
Reclassification of Haloactinobacterium glacieicola as Occultella glacieicola gen. nov., comb. nov., of Haloactinobacterium album as Ruania alba comb. nov, with an emended description of the genus Ruania, recognition that the genus names Haloactinobacterium and Ruania are heterotypic synonyms and description of Occultella aeris sp. nov., a halotolerant isolate from surface soil sampled at an ancient copper smelter.
Read more16 Mar 2021
publication
Jeotgalicoccus meleagridis sp. nov. isolated from bioaerosol from emissions of a turkey fattening plant and reclassification of Jeotgalicoccus halophilus Liu et al. 2011 as a later heterotypic synonym of Jeotgalicoccus aerolatus Martin et al. 2011.
Read more01 Dec 2020
publication
Flavobacterium salmonis sp. nov. isolated from Atlantic salmon (Salmo salar) and formal proposal to reclassify Flavobacterium spartansii as a later heterotypic synonym of Flavobacterium tructae.
Read more30 Nov 2020
publication
Flavobacterium bizetiae sp. nov., isolated from diseased freshwater fish in Canada at the end of the 1970s.
Read more20 Nov 2020
10 Nov 2020
publication
On the transformation of MinHash-based uncorrected distances into proper evolutionary distances for phylogenetic inference
Read more14 Oct 2020
publication
Halomonas lysinitropha sp. nov., a novel halophilic bacterium isolated from a hypersaline wetland.
Read more09 Oct 2020
publication
Flavobacterium panici sp. nov. isolated from the rhizosphere of the switchgrass Panicum virgatum.
Read more24 Sep 2020
01 Sep 2020
03 Aug 2020
publication
Emergence and clonal expansion of in vitro artemisinin-resistant Plasmodium falciparum kelch13 R561H mutant parasites in Rwanda.
Read more31 Jul 2020
12 Mar 2020
01 Mar 2020
publication
Arthrobacter ulcerisalmonis sp. nov., isolated from an ulcer of a farmed Atlantic salmon (Salmo salar), and emended description of the genus Arthrobacter sensu lato.
Read more01 Mar 2020
publication
Serratia vespertilionis (García-Fraile et al. 2015) is a later heterotypic synonym of Serratia ficaria (Grimont et al. 1981).
Read more09 Nov 2019
05 Oct 2019
publication
Erratum to “Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.” [Res Microbiol 170 (3) (2019) 165-170].
Read more03 Oct 2019
publication
Genus-wide Yersinia core-genome multilocus sequence typing for species identification and strain characterization
Read more02 Aug 2019
01 Aug 2019
08 Jul 2019
publication
Simulation data for the estimation of numerical constants for approximating pairwise evolutionary distances between amino acid sequences
Read more01 Jul 2019
10 Jun 2019
publication
A fast alignment-free bioinformatics procedure to infer accurate distance-based phylogenetic trees from genome assemblies
Read more04 Jun 2019
01 Jun 2019
01 Jun 2019
01 May 2019
publication
Filibacter tadaridae sp. nov., isolated from within a guano pile from a colony of Mexican free-tailed bats Tadarida brasiliensis.
Read more26 Apr 2019
publication
Carriage of a Single Strain of Nontoxigenic Corynebacterium diphtheriae bv. Belfanti (Corynebacterium belfantii) in Four Patients with Cystic Fibrosis
Read more08 Apr 2019
08 Apr 2019
21 Mar 2019
publication
Whole-Genome Sequences of a Cluster of 14 Unidentified Related sp. Strains from Human Clinical Samples and Type Strains of 3 Validated Species
Read more20 Mar 2019
publication
Filibacter tadaridae sp. nov., isolated from within a guano pile from a colony of Mexican free-tailed bats Tadarida brasiliensis.
Read more09 Mar 2019
tool
RΕQ: assessing branch supports oƒ a distance-based phylogenetic tree with the rate oƒ elementary quartets
Read more01 Mar 2019
25 Feb 2019
publication
Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.
Read more28 Jan 2019
25 Jan 2019
publication
Meat and Fish as Sources of Extended-Spectrum β-Lactamase-Producing Escherichia coli, Cambodia
Read more01 Jun 2018
publication
Genomic Sequencing of Bordetella pertussis for Epidemiology and Global Surveillance of Whooping Cough
Read more24 Apr 2018
publication
Outbreak of Invasive Wound Mucormycosis in a Burn Unit Due to Multiple Strains of Mucor circinelloides f. circinelloides Resolved by Whole-Genome Sequencing.
Read more05 Apr 2018
publication
Draft Genome Sequence of the Fish Pathogen Flavobacterium columnare Genomovar III Strain PH-97028 (=CIP 109753).
Read more28 Mar 2018
01 Jan 2018
publication
Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov.
Read more23 Oct 2017
01 Oct 2017
publication
Manual and expert annotation of the nearly complete genome sequence of Staphylococcus sciuri strain ATCC 29059: A reference for the oxidase-positive staphylococci that supports the atypical phenotypic features of the species group.
Read more01 Sep 2017
publication
Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter.
Read more04 Jul 2017
24 May 2017
news
Emerging diseases: a highly mutant strain of the Elizabethkingia bacterium caused an outbreak in Wisconsin
Read more24 May 2017
publication
Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain.
Read more18 May 2017
publication
Proteome remodelling by the stress sigma factor RpoS/σS in Salmonella: identification of small proteins and evidence for post-transcriptional regulation.
Read more06 Apr 2017
publication
Molecular characterization of Chlamydia pneumoniae associated to atherosclerosis
Read more01 Feb 2017
publication
Characterization of Clostridium Baratii Type F Strains Responsible for an Outbreak of Botulism Linked to Beef Meat Consumption in France
Read more10 Oct 2016
news
A population biology study of Listeria ushers in a new era in listeriosis surveillance
Read more10 Oct 2016
publication
Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes.
Read more31 Aug 2016
publication
Phylogenomic analysis supports the ancestral presence of LPS-outer membranes in the Firmicutes.
Read more27 Jul 2016
publication
Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis
Read more02 Jul 2016
publication
Species- and Strain-Specific Adaptation of the HSP70 Super Family in Pathogenic Trypanosomatids.
Read more06 Jun 2016
01 Mar 2016
publication
Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity.
Read more22 Feb 2016
publication
topIb, a phylogenetic hallmark gene of Thaumarchaeota encodes a functional eukaryote-like topoisomerase IB
Read more01 Feb 2016
news
Listeria: identification of hypervirulent strains with placental and cerebral tropism
Read more15 Oct 2015
publication
Whole genome sequencing to investigate an outbreak of mucormycosis in a burn unit
Read more05 Oct 2015
15 Sep 2015
07 Sep 2015
project
ANR TransLeish – Discovery of druggable protein kinases in the protozoan parasite Leishmania donovani using hit compounds identified by phenotypic screening
Read more31 Aug 2015
project
Genomic taxonomy of bacterial strains: universal nomenclatures for epidemiology and population biology
Read more31 Aug 2015
publication
Épidémie de mucormycose dans un centre de traitement des brûlés : des biomarqueurs diagnostiques au séquençage complets des souches
Read more22 Jul 2015
project
Bioinformatics of genome sequencing applied to epidemiological surveillance of infectious agents
Read more16 Jul 2015
11 May 2015
01 Nov 2014
publication
Genomic definition of hypervirulent and multidrug-resistant Klebsiella pneumoniae clonal groups
Read more26 Sep 2014
publication
Development of a multiplex PCR assay for identification of Klebsiella pneumoniae hypervirulent clones of capsular serotype K2
Read more01 Sep 2014
publication
Campylobacter coli cultured from the stools of a patient with immunoproliferative small intestinal disease.
Read more13 May 2014
publication
AlienTrimmer removes adapter oligonucleotides with high sensitivity in short-insert paired-end reads. Commentary on Turner (2014) Assessment of insert sizes and adapter content in FASTQ data from NexteraXT libraries
Read more13 Mar 2014
publication
Draft Genome Sequence of Campylobacter coli Strain IPSID-1 Isolated from a Patient with Immunoproliferative Small Intestinal Disease.
Read more01 Aug 2013
publication
AlienTrimmer: a tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads
Read more06 Jan 2013
publication
Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis
Read more08 Sep 2011
07 Jun 2011
publication
Large-scale phylogenomic analyses indicate a deep origin of primary plastids within cyanobacteria
Read more13 Jul 2010
publication
BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
Read more15 Jun 2010
01 Apr 2010
24 Mar 2009
26 Mar 2008
01 Oct 2007
01 Oct 2006
publication