Ligne de temps
Alexis Criscuolo
Responsable de Structure
16 oct. 2025
project
PARADIGM – Personalised phAge therapy against gRam-negAtive multiDrug resIstant orGanisMs
Lire plus01 août 2025
publication
Expanding species diversity in the monotypic genera Thalassoporum and Tumidithrix (Pseudanabaenales, Cyanobacteriota) with the description of Thalassoporum mexicanum sp. nov. and Tumidithrix helvetica sp. nov.
Lire plus24 mai 2025
publication
Microevolution and genomic epidemiology of the diphtheria-causing zoonotic pathogen Corynebacterium ulcerans
Lire plus01 févr. 2025
publication
Insight on the heterocyte patterning and the proheterocyte division in the toxic cyanobacterium Kaarinaea lacus gen. nov., sp. nov., and its genomic potential for natural products.
Lire plus01 févr. 2025
publication
Pseudoalteromonas holothuriae sp. nov., isolated from the sea cucumber Holothuria forskali.
Lire plus08 janv. 2025
02 janv. 2025
24 déc. 2024
publication
Description of Cohnella rhizoplanae sp. nov., isolated from the root surface of soybean (Glycine max).
Lire plus06 déc. 2024
publication
Comment on: Co-occurrence of the cephalosporinase cepA and carbapenemase cfiA genes in a Bacteroides fragilis Division II strain: an unexpected finding
Lire plus28 sept. 2023
publication
Increasing Prevalence of Artemisinin-Resistant HRP2-Negative Malaria in Eritrea
Lire plus20 juin 2023
01 avr. 2023
publication
Paenibacillus auburnensis sp. nov. and Paenibacillus pseudetheri sp. nov., isolated from the rhizosphere of Zea mays
Lire plus01 nov. 2022
publication
Neobacillus rhizosphaerae sp. nov., isolated from the rhizosphere, and reclassification of Bacillus dielmonensis as Neobacillus dielmonensis comb. nov.
Lire plus08 oct. 2022
01 oct. 2022
23 sept. 2022
publication
Neonatal acquisition of extended-spectrum beta-lactamase-producing Enterobacteriaceae in the community of a low-income country (NeoLIC): protocol for a household cohort study in Moramanga, Madagascar.
Lire plus18 sept. 2022
11 juil. 2022
01 juil. 2022
14 juin 2022
publication
A dual barcoding approach to bacterial strain nomenclature: Genomic taxonomy of Klebsiella pneumoniae strains
Lire plus09 mai 2022
08 mai 2022
01 mai 2022
publication
Pseudoneobacillus rhizosphaerae gen. nov., sp. nov., isolated from maize root rhizosphere.
Lire plus26 mars 2022
publication
In vitro and in silico parameters for precise cgMLST typing of Listeria monocytogenes.
Lire plus01 déc. 2021
30 nov. 2021
01 nov. 2021
01 oct. 2021
publication
Paenibacillus allorhizosphaerae sp. nov., from soil of the rhizosphere of Zea mays.
Lire plus15 sept. 2021
05 sept. 2021
05 sept. 2021
01 août 2021
publication
Ongoing diphtheria outbreak in Yemen: a cross-sectional and genomic epidemiology study.
Lire plus17 juil. 2021
publication
Peptoniphilus nemausensis sp. nov. A new Gram-positive anaerobic coccus isolated from human clinical samples, an emendated description of the genus Peptoniphilus and an evaluation of the taxonomic status of Peptoniphilus species with not validly published names.
Lire plus12 juin 2021
01 juin 2021
publication
Author Correction: Emergence and clonal expansion of in vitro artemisinin-resistant Plasmodium falciparum kelch13 R561H mutant parasites in Rwanda.
Lire plus01 avr. 2021
01 avr. 2021
publication
Reclassification of Haloactinobacterium glacieicola as Occultella glacieicola gen. nov., comb. nov., of Haloactinobacterium album as Ruania alba comb. nov, with an emended description of the genus Ruania, recognition that the genus names Haloactinobacterium and Ruania are heterotypic synonyms and description of Occultella aeris sp. nov., a halotolerant isolate from surface soil sampled at an ancient copper smelter.
Lire plus16 mars 2021
publication
Jeotgalicoccus meleagridis sp. nov. isolated from bioaerosol from emissions of a turkey fattening plant and reclassification of Jeotgalicoccus halophilus Liu et al. 2011 as a later heterotypic synonym of Jeotgalicoccus aerolatus Martin et al. 2011.
Lire plus01 déc. 2020
publication
Flavobacterium salmonis sp. nov. isolated from Atlantic salmon (Salmo salar) and formal proposal to reclassify Flavobacterium spartansii as a later heterotypic synonym of Flavobacterium tructae.
Lire plus30 nov. 2020
publication
Flavobacterium bizetiae sp. nov., isolated from diseased freshwater fish in Canada at the end of the 1970s.
Lire plus20 nov. 2020
10 nov. 2020
publication
On the transformation of MinHash-based uncorrected distances into proper evolutionary distances for phylogenetic inference
Lire plus14 oct. 2020
publication
Halomonas lysinitropha sp. nov., a novel halophilic bacterium isolated from a hypersaline wetland.
Lire plus09 oct. 2020
publication
Flavobacterium panici sp. nov. isolated from the rhizosphere of the switchgrass Panicum virgatum.
Lire plus24 sept. 2020
01 sept. 2020
03 août 2020
publication
Emergence and clonal expansion of in vitro artemisinin-resistant Plasmodium falciparum kelch13 R561H mutant parasites in Rwanda.
Lire plus31 juil. 2020
12 mars 2020
01 mars 2020
publication
Serratia vespertilionis (García-Fraile et al. 2015) is a later heterotypic synonym of Serratia ficaria (Grimont et al. 1981).
Lire plus01 mars 2020
publication
Arthrobacter ulcerisalmonis sp. nov., isolated from an ulcer of a farmed Atlantic salmon (Salmo salar), and emended description of the genus Arthrobacter sensu lato.
Lire plus09 nov. 2019
05 oct. 2019
publication
Erratum to “Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.” [Res Microbiol 170 (3) (2019) 165-170].
Lire plus03 oct. 2019
publication
Genus-wide Yersinia core-genome multilocus sequence typing for species identification and strain characterization
Lire plus02 août 2019
01 août 2019
08 juil. 2019
publication
Simulation data for the estimation of numerical constants for approximating pairwise evolutionary distances between amino acid sequences
Lire plus01 juil. 2019
10 juin 2019
publication
A fast alignment-free bioinformatics procedure to infer accurate distance-based phylogenetic trees from genome assemblies
Lire plus04 juin 2019
01 juin 2019
01 mai 2019
publication
Filibacter tadaridae sp. nov., isolated from within a guano pile from a colony of Mexican free-tailed bats Tadarida brasiliensis.
Lire plus26 avr. 2019
publication
Carriage of a Single Strain of Nontoxigenic Corynebacterium diphtheriae bv. Belfanti (Corynebacterium belfantii) in Four Patients with Cystic Fibrosis
Lire plus08 avr. 2019
08 avr. 2019
21 mars 2019
publication
Whole-Genome Sequences of a Cluster of 14 Unidentified Related sp. Strains from Human Clinical Samples and Type Strains of 3 Validated Species
Lire plus09 mars 2019
tool
RΕQ: assessing branch supports oƒ a distance-based phylogenetic tree with the rate oƒ elementary quartets
Lire plus01 mars 2019
25 févr. 2019
publication
Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.
Lire plus28 janv. 2019
25 janv. 2019
publication
Meat and Fish as Sources of Extended-Spectrum β-Lactamase-Producing Escherichia coli, Cambodia.
Lire plus01 juin 2018
publication
Genomic Sequencing of Bordetella pertussis for Epidemiology and Global Surveillance of Whooping Cough
Lire plus24 avr. 2018
publication
Outbreak of Invasive Wound Mucormycosis in a Burn Unit Due to Multiple Strains of Mucor circinelloides f. circinelloides Resolved by Whole-Genome Sequencing.
Lire plus05 avr. 2018
publication
Draft Genome Sequence of the Fish Pathogen Flavobacterium columnare Genomovar III Strain PH-97028 (=CIP 109753).
Lire plus28 mars 2018
01 janv. 2018
publication
Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov.
Lire plus23 oct. 2017
01 oct. 2017
publication
Manual and expert annotation of the nearly complete genome sequence of Staphylococcus sciuri strain ATCC 29059: A reference for the oxidase-positive staphylococci that supports the atypical phenotypic features of the species group.
Lire plus01 sept. 2017
publication
Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter.
Lire plus04 juil. 2017
24 mai 2017
news
Emerging diseases: a highly mutant strain of the Elizabethkingia bacterium caused an outbreak in Wisconsin
Lire plus24 mai 2017
publication
Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain.
Lire plus18 mai 2017
publication
Proteome remodelling by the stress sigma factor RpoS/σS in Salmonella: identification of small proteins and evidence for post-transcriptional regulation.
Lire plus06 avr. 2017
publication
Molecular characterization of Chlamydia pneumoniae associated to atherosclerosis
Lire plus01 févr. 2017
publication
Characterization of Clostridium Baratii Type F Strains Responsible for an Outbreak of Botulism Linked to Beef Meat Consumption in France
Lire plus10 oct. 2016
news
A population biology study of Listeria ushers in a new era in listeriosis surveillance
Lire plus10 oct. 2016
publication
Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes.
Lire plus31 août 2016
publication
Phylogenomic analysis supports the ancestral presence of LPS-outer membranes in the Firmicutes.
Lire plus27 juil. 2016
publication
Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis
Lire plus02 juil. 2016
publication
Species- and Strain-Specific Adaptation of the HSP70 Super Family in Pathogenic Trypanosomatids.
Lire plus06 juin 2016
01 mars 2016
publication
Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity.
Lire plus22 févr. 2016
publication
topIb, a phylogenetic hallmark gene of Thaumarchaeota encodes a functional eukaryote-like topoisomerase IB
Lire plus01 févr. 2016
news
Listeria: identification of hypervirulent strains with placental and cerebral tropism
Lire plus15 oct. 2015
publication
Whole genome sequencing to investigate an outbreak of mucormycosis in a burn unit
Lire plus05 oct. 2015
15 sept. 2015
07 sept. 2015
project
ANR TransLeish – Discovery of druggable protein kinases in the protozoan parasite Leishmania donovani using hit compounds identified by phenotypic screening
Lire plus31 août 2015
project
Genomic taxonomy of bacterial strains: universal nomenclatures for epidemiology and population biology
Lire plus31 août 2015
publication
Épidémie de mucormycose dans un centre de traitement des brûlés : des biomarqueurs diagnostiques au séquençage complets des souches
Lire plus22 juil. 2015
project
Bioinformatics of genome sequencing applied to epidemiological surveillance of infectious agents
Lire plus16 juil. 2015
11 mai 2015
01 nov. 2014
publication
Genomic definition of hypervirulent and multidrug-resistant Klebsiella pneumoniae clonal groups
Lire plus26 sept. 2014
publication
Development of a multiplex PCR assay for identification of Klebsiella pneumoniae hypervirulent clones of capsular serotype K2
Lire plus01 sept. 2014
publication
Campylobacter coli cultured from the stools of a patient with immunoproliferative small intestinal disease.
Lire plus13 mai 2014
publication
AlienTrimmer removes adapter oligonucleotides with high sensitivity in short-insert paired-end reads. Commentary on Turner (2014) Assessment of insert sizes and adapter content in FASTQ data from NexteraXT libraries
Lire plus13 mars 2014
publication
Draft Genome Sequence of Campylobacter coli Strain IPSID-1 Isolated from a Patient with Immunoproliferative Small Intestinal Disease.
Lire plus01 août 2013
publication
AlienTrimmer: a tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads
Lire plus06 janv. 2013
publication
Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis
Lire plus08 sept. 2011
07 juin 2011
publication
Large-scale phylogenomic analyses indicate a deep origin of primary plastids within cyanobacteria
Lire plus13 juil. 2010
publication
BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
Lire plus15 juin 2010
01 avr. 2010
24 mars 2009
26 mars 2008
01 oct. 2007
01 oct. 2006
publication