• 2024
  Rouard C, Collet L, Njamkepo E, Jenkins C, Sacheli R, Benoit-Cattin T, Figoni J, Weill FX, Long-Distance Spread of a Highly Drug-Resistant Epidemic Cholera Strain., N Engl J Med 2024 Dec; 391(23): 2271-2273.
• 2024
  Hawkey J, Frézal L, Tran Dien A, Zhukova A, Brown D, Chattaway MA, Simon S, Izumiya H, Fields PI, De Lappe N, Kaftyreva L, Xu X, Isobe J, Clermont D, Njamkepo E, Akeda Y, Issenhuth-Jeanjean S, Makarova M, Wang Y, Hunt M, Jenkins BM, Ravel M, Guibert V, Serre E, Matveeva Z, Fabre L, Cormican M, Yue M, Zhu B, Morita M, Iqbal Z, Silva Nodari C, Pardos de la Gandara M, Weill FX, Genomic perspective on the bacillus causing paratyphoid B fever., Nat Commun 2024 Dec; 15(1): 10143.
• 2024
  Gu Q, Draheim M, Planchais C, He Z, Mu F, Gong S, Shen C, Zhu H, Zhivaki D, Shahin K, Collard JM, Su M, Zhang X, Mouquet H, Lo-Man R, Intestinal newborn regulatory B cell antibodies modulate microbiota communities., Cell Host Microbe 2024 Oct; 32(10): 1787-1804.e9.
• 2024
  Rafei R, Osman M, Kassem II, Dabboussi F, Weill FX, Hamze M, Spotlight on the epidemiology and antimicrobial susceptibility profiles of Vibrio species in the MENA region, 2000-2023., Future Microbiol 2024 Sep; (): 1-21.
• 2024
  Rouard C, Greig DR, Tauhid T, Dupke S, Njamkepo E, Amato E, van der Putten B, Naseer U, Blaschitz M, Mandilara GD, Cohen Stuart J, Indra A, Noël H, Sideroglou T, Heger F, van den Beld M, Wester AL, Quilici ML, Scholz HC, Fröding I, Jenkins C, Weill FX, Genomic analysis of Vibrio cholerae O1 isolates from cholera cases, Europe, 2022., Euro Surveill 2024 Sep; 29(36): .
• 2024
  Rouard C, Njamkepo E, Quilici ML, Nguyen S, Knight-Connoni V, Šafránková R, Weill FX, Vibrio cholerae serogroup O5 was responsible for the outbreak of gastroenteritis in Czechoslovakia in 1965., Microb Genom 2024 Sep; 10(9): .
• 2024
  Abou Fayad A, Rafei R, Njamkepo E, Ezzeddine J, Hussein H, Sinno S, Gerges JR, Barada S, Sleiman A, Assi M, Baakliny M, Hamedeh L, Mahfouz R, Dabboussi F, Feghali R, Mohsen Z, Rady A, Ghosn N, Abiad F, Abubakar A, Barakat A, Wauquier N, Quilici ML, Hamze M, Weill FX, Matar GM, An unusual two-strain cholera outbreak in Lebanon, 2022-2023: a genomic epidemiology study., Nat Commun 2024 Aug; 15(1): 6963.
• 2024
  Jalalizadeh F, Njamkepo E, Weill FX, Goodarzi F, Rahnamaye-Farzami M, Sabourian R, Bakhshi B, Genetic approach toward linkage of Iran 2012-2016 cholera outbreaks with 7th pandemic Vibrio cholerae., BMC Microbiol 2024 Jan; 24(1): 33.
• 2024
  De Bene AF, Russini V, Corradini C, Vita S, Pecchi S, De Marchis ML, Terracciano G, Focardi C, Montemaggiori A, Zuffi MAL, Weill FX, Bossù T, An extremely rare serovar of Salmonella enterica (Yopougon) discovered in a Western Whip Snake (Hierophis viridiflavus) from Montecristo Island, Italy: case report and review., Arch Microbiol 2024 Jan; 206(1): 49.
• 2023
  Cui S, Xia T, Zhao J, Ren X, Wu T, Kameni M, Guo X, He L, Guo J, Duperray-Susini A, Levillayer F, Collard JM, Zhong J, Pan L, Tangy F, Vidalain PO, Zhou D, Jiu Y, Faure M, Wei Y, NDP52 mediates an antiviral response to hepatitis B virus infection through Rab9-dependent lysosomal degradation pathway., Nat Commun 2023 Dec; 14(1): 8440.
• 2023
  Yassine I, Rafei R, Pardos de la Gandara M, Osman M, Fabre L, Dabboussi F, Hamze M, Weill FX, Genomic analysis of Shigella isolates from Lebanon reveals marked genetic diversity and antimicrobial resistance., Microb Genom 2023 Dec; 9(12): .
• 2023
  De Silva PM, Bennett RJ, Kuhn L, Ngondo P, Debande L, Njamkepo E, Ho B, Weill FX, Marteyn BS, Jenkins C, Baker KS, Escherichia coli killing by epidemiologically successful sublineages of Shigella sonnei is mediated by colicins., EBioMedicine 2023 Nov; 97(): 104822.
• 2023
  Devred I, Rambliere L, Herindrainy P, Andriamarohasina L, Harimanana A, Randrianirina F, Ratsima EH, Hivernaud D, Kermorvant-Duchemin E, Andrianirina ZZ, Abdou AY, Delarocque-Astagneau E, Guillemot D, Crucitti T, Collard JM, Huynh BT, Incidence and risk factors of neonatal bacterial infections: a community-based cohort from Madagascar (2018-2021)., BMC Infect Dis 2023 Oct; 23(1): 658.
• 2023
  Lassalle F, Al-Shalali S, Al-Hakimi M, Njamkepo E, Bashir IM, Dorman MJ, Rauzier J, Blackwell GA, Taylor-Brown A, Beale MA, Cazares A, Al-Somainy AA, Al-Mahbashi A, Almoayed K, Aldawla M, Al-Harazi A, Quilici ML, Weill FX, Dhabaan G, Thomson NR, Genomic epidemiology reveals multidrug resistant plasmid spread between Vibrio cholerae lineages in Yemen., Nat Microbiol 2023 Oct; 8(10): 1787-1798.
• 2023
  Jones G, Mariani-Kurkdjian P, Cointe A, Bonacorsi S, Lefèvre S, Weill FX, Le Strat Y, Sporadic Shiga Toxin-Producing Escherichia coli-Associated Pediatric Hemolytic Uremic Syndrome, France, 2012-2021., Emerg Infect Dis 2023 Oct; 29(10): 2054-2064.
• 2023
  Zhou X, Kang X, Chen J, Song Y, Jia C, Teng L, Tang Y, Jiang Z, Peng X, Tao X, Xu Y, Huang L, Xu X, Xu Y, Zhang T, Yu S, Gong J, Wang S, Liu Y, Zhu G, Kehrenberg C, Weill FX, Barrow P, Li Y, Zhao G, Yue M, Genome degradation promotes Salmonella pathoadaptation by remodeling fimbriae-mediated proinflammatory response., Natl Sci Rev 2023 Oct; 10(10): nwad228.
• 2023
  Shahin K, Soleimani-Delfan A, He Z, Sansonetti P, Collard JM, Metagenomics revealed a correlation of gut phageome with autism spectrum disorder., Gut Pathog 2023 Aug; 15(1): 39.
• 2023
  Razanajatovo IM, Andrianomiadana L, Habib A, Randrianarisoa MM, Razafimanjato H, Rakotondrainipiana M, Andriantsalama P, Randriamparany R, Andriamandimby SF, Vonaesch P, Sansonetti PJ, Lacoste V, Randremanana RV, Collard JM, Heraud JM, On Behalf Of The Afribiota Investigators, Factors Associated with Carriage of Enteropathogenic and Non-Enteropathogenic Viruses: A Reanalysis of Matched Case-Control Data from the AFRIBIOTA Site in Antananarivo, Madagascar., Pathogens 2023 Aug; 12(8): .
• 2023
  Gay N, Rabenandrasana MAN, Panandiniaina HP, Rakotoninidrina MF, Ramahatafandry IT, Enouf V, Roger F, Collard JM, Cardinale E, Rieux A, Loire E, One Health compartment analysis of ESBL-producing Escherichia coli reveals multiple transmission events in a rural area of Madagascar., J Antimicrob Chemother 2023 Aug; 78(8): 1848-1858.
• 2023
  Smith AM, Sekwadi P, Erasmus LK, Lee CC, Stroika SG, Ndzabandzaba S, Alex V, Nel J, Njamkepo E, Thomas J, Weill FX, Imported Cholera Cases, South Africa, 2023., Emerg Infect Dis 2023 Aug; 29(8): 1687-1690.
• 2023
  Cuypers WL, Meysman P, Weill FX, Hendriksen RS, Beyene G, Wain J, Nair S, Chattaway MA, Perez-Sepulveda BM, Ceyssens PJ, de Block T, Lee WWY, Pardos de la Gandara M, Kornschober C, Moran-Gilad J, Veldman KT, Cormican M, Torpdahl M, Fields PI, Černý T, Hardy L, Tack B, Mellor KC, Thomson N, Dougan G, Deborggraeve S, Jacobs J, Laukens K, Van Puyvelde S, A global genomic analysis of Salmonella Concord reveals lineages with high antimicrobial resistance in Ethiopia., Nat Commun 2023 Jun; 14(1): 3517.
• 2023
  Ardillon A, Ramblière L, Kermorvant-Duchemin E, Sok T, Zo AZ, Diouf JB, Long P, Lach S, Sarr FD, Borand L, Cheysson F, Collard JM, Herindrainy P, de Lauzanne A, Vray M, Delarocque-Astagneau E, Guillemot D, Huynh BT, Inappropriate antibiotic prescribing and its determinants among outpatient children in 3 low- and middle-income countries: A multicentric community-based cohort study., PLoS Med 2023 Jun; 20(6): e1004211.
• 2023
  Rambliere L, de Lauzanne A, Diouf JB, Zo AZ, Landau M, Herindrainy P, Hivernaud D, Sarr FD, Sok T, Vray M, Collard JM, Borand L, Delarocque-Astagneau E, Guillemot D, Kermorvant-Duchemin E, Huynh BT, Stillbirths and neonatal mortality in LMICs: A community-based mother-infant cohort study., J Glob Health 2023 Apr; 13(): 04031.
• 2023
  Mason LCE, Greig DR, Cowley LA, Partridge SR, Martinez E, Blackwell GA, Chong CE, Malaka De Silva P, Bengtsson RJ, Draper JL, Ginn AN, Sandaradura I, Sim EM, Iredell JR, Sintchenko V, Ingle DJ, Howden BP, Lefèvre S, Njampeko E, Weill FX ,Ceyssens PJ, Jenkins C & Baker KS, The evolution and international spread of extensively drug resistant Shigella sonnei, Nat Commun 14, 1983 (2023).
• 2023
  Verrier F, de Lauzanne A, Diouf JN, Zo AZ, Ramblière L, Herindrainy P, Sarr FD, Sok T, Vray M, Collard JM, Borand L, Kermorvant-Duchemin E, Delarocque-Astagneau E, Guillemot D, Huynh BT, Vaccination Coverage and Risk Factors Associated With Incomplete Vaccination Among Children in Cambodia, Madagascar, and Senegal., Open Forum Infect Dis 2023 Apr; 10(4): ofad136.
• 2023
  Nodari CS, Opazo-Capurro A, Castillo-Ramirez S, Mattioni Marchetti V, , Editorial: Mobile genetic elements as dissemination drivers of multidrug-resistant Gram-negative bacteria., Front Cell Infect Microbiol 2023 ; 13(): 1180510.
• 2023
  Yassine I, Hansen EE, Lefèvre S, Ruckly C, Carle I, Lejay-Collin M, Fabre L, Rafei R, Pardos de la Gandara M, Daboussi F, Shahin A, Weill FX, ShigaPass: an in silico tool predicting Shigella serotypes from whole-genome sequencing assemblies., Microb Genom 2023 Mar; 9(3): .
• 2023
  Lefèvre S, Njamkepo E, Feldman S, Ruckly C, Carle I, Lejay-Collin M, Fabre L, Yassine I, Frézal L, Pardos de la Gandara M, Fontanet A, Weill FX, Rapid emergence of extensively drug-resistant Shigella sonnei in France., Nat Commun 2023 Jan; 14(1): 462.
• 2023
  Munk P, Brinch C, Møller FD, Petersen TN, Hendriksen RS, Seyfarth AM, Kjeldgaard JS, Svendsen CA, van Bunnik B, Berglund F, , Larsson DGJ, Koopmans M, Woolhouse M, Aarestrup FM, Author Correction: Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance., Nat Commun 2023 Jan; 14(1): 178.
• 2023
  Pardos de la Gandara M, Fournet N, Bonifait L, Lefèvre S, Chemaly M, Grastilleur C, Cadel-Six S, Fach P, Pignault A, Brisabois A, Jourdan-Da Silva N, Weill FX, Countrywide multi-serotype outbreak of Salmonella Bovismorbificans ST142 and monophasic Salmonella Typhimurium ST34 associated with dried pork sausages in France, September 2020* to January 2021., Euro Surveill 2023 Jan; 28(2): .
• 2023
  Vonaesch P, Billy V, Mann AE, Morien E, Habib A, Collard JM, Dédé M, Kapel N, Sansonetti PJ, Parfrey LW, The eukaryome of African children is influenced by geographic location, gut biogeography, and nutritional status., Microlife 2023 ; 4(): uqad033.
• 2023
  Hounmanou YMG, Njamkepo E, Rauzier J, Gallandat K, Jeandron A, Kamwiziku G, Porten K, Luquero F, Abedi AA, Rumedeka BB, Miwanda B, Michael M, Okitayemba PW, Saidi JM, Piarroux R, Weill FX, Dalsgaard A, Quilici ML, Genomic Microevolution of Vibrio cholerae O1, Lake Tanganyika Basin, Africa., Emerg Infect Dis 2023 Jan; 29(1): 149-153.
• 2023
  Guillo L, Flachaire B, Avouac J, Dong C, Nachury M, Bouguen G, Buisson A, Caillo L, Fumery M, Gilletta C, Hébuterne X, Lafforgue P, Laharie D, Mahé E, Marotte H, Nancey S, Ottaviani S, Salmon JH, Savoye G, Serrero M, Uzzan M, Viguier M, Richez C, Peyrin-Biroulet L, Seksik P, Pham T, Efficacy and safety of combination targeted therapies in immune-mediated inflammatory disease: the COMBIO study., Dig Liver Dis 2023 Jan; 55(1): 61-68.
• 2022
  Munk P, Brinch C, Møller FD, Petersen TN, Hendriksen RS, Seyfarth AM, Kjeldgaard JS, Svendsen CA, van Bunnik B, Berglund F, , Larsson DGJ, Koopmans M, Woolhouse M, Aarestrup FM, Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance., Nat Commun 2022 Dec; 13(1): 7251.
• 2022
  Li Y, Teng L, Xu X, Li X, Peng X, Zhou X, Du J, Tang Y, Jiang Z, Wang Z, Jia C, Müller A, Kehrenberg C, Wang H, Wu B, Weill FX, Yue M, A nontyphoidal Salmonella serovar domestication accompanying enhanced niche adaptation., EMBO Mol Med 2022 Nov; 14(11): e16366.
• 2022
  Vonaesch P, Araújo JR, Gody JC, Mbecko JR, Sanke H, Andrianonimiadana L, Naharimanananirina T, Ningatoloum SN, Vondo SS, Gondje PB, Rodriguez-Pozo A, Rakotondrainipiana M, Kandou KJE, Nestoret A, Kapel N, Djorie SG, Finlay BB, Wegener Parfrey L, Collard JM, Randremanana RV, Sansonetti PJ, Stunted children display ectopic small intestinal colonization by oral bacteria, which cause lipid malabsorption in experimental models., Proc Natl Acad Sci U S A 2022 Oct; 119(41): e2209589119.
• 2022
  de Lauzanne A, Sreng N, Foucaud E, Sok T, Chon T, Yem C, Hak V, Heng S, Soda M, Gouali M, Nadimpalli M, Inghammar M, Rabenandrasana MAN, Collard JM, Vray M, Hello SL, Kerleguer A, Piola P, Delarocque-Astagneau E, Guillemot D, Huynh BT, Borand L, Prevalence and factors associated with faecal carriage of extended-spectrum β-lactamase-producing Enterobacterales among peripartum women in the community in Cambodia., J Antimicrob Chemother 2022 Sep; 77(10): 2658-2666.
• 2022
  Harimanana A, Rakotondrasoa A, Rivoarilala LO, Criscuolo A, Opatowski L, Rakotomanana EFN, Herindrainy P, Collard JM, Crucitti T, Huynh BT, Neonatal acquisition of extended-spectrum beta-lactamase-producing Enterobacteriaceae in the community of a low-income country (NeoLIC): protocol for a household cohort study in Moramanga, Madagascar., BMJ Open 2022 Sep; 12(9): e061463.
• 2022
  Williams DJ, Grimont PAD, Cazares A, Grimont F, Ageron E, Pettigrew KA, Cazares D, Njamkepo E, Weill FX, Heinz E, Holden MTG, Thomson NR, Coulthurst SJ, The genus Serratia revisited by genomics., Nat Commun 2022 Sep; 13(1): 5195.
• 2022
  Falay D, Hardy L, Tanzito J, Lunguya O, Bonebe E, Peeters M, Mattheus W, Van Geet C, Verheyen E, Akaibe D, Katuala P, Ngbonda D, Weill FX, Pardos de la Gandara M, Jacobs J, Urban rats as carriers of invasive Salmonella Typhimurium sequence type 313, Kisangani, Democratic Republic of Congo., PLoS Negl Trop Dis 2022 Sep; 16(9): e0010740.
• 2022
  De Sousa Violante M, Podeur G, Michel V, Guillier L, Radomski N, Lailler R, Le Hello S, Weill FX, Mistou MY, Mallet L, A retrospective and regional approach assessing the genomic diversity of Salmonella Dublin., NAR Genom Bioinform 2022 Sep; 4(3): lqac047.
• 2022
  Vonaesch P, Winkel M, Kapel N, Nestoret A, Barbot-Trystram L, Pontoizeau C, Barouki R, Rakotondrainipiana M, Kandou K, Andriamanantena Z, Andrianonimiadana L, Habib A, Rodriguez-Pozo A, Hasan M, Vigan-Womas I, Collard JM, Gody JC, Djorie S, Sansonetti PJ, Randremanana RV, On Behalf Of The Afribiota Investigators, Putative Biomarkers of Environmental Enteric Disease Fail to Correlate in a Cross-Sectional Study in Two Study Sites in Sub-Saharan Africa., Nutrients 2022 Aug; 14(16): .
• 2022
  Randrianarisoa MM, Rakotondrainipiana M, Randriamparany R, Andriantsalama PV, Randrianarijaona A, Habib A, Robinson A, Raharimalala L, Hunald FA, Etienne A, Collard JM, Randrianirina F, Barouki R, Pontoizeau C, Nestoret A, Kapel N, Sansonetti P, Vonaesch P, Randremanana RV, Factors associated with anaemia among preschool- age children in underprivileged neighbourhoods in Antananarivo, Madagascar., BMC Public Health 2022 Jul; 22(1): 1320.
• 2022
  Benamrouche N, Belkader C, Njamkepo E, Zemam SS, Sadat S, Saighi K, Boutabba DT, Mechouet F, Benhadj-Slimani R, Zmit FZ, Rauzier J, Kias F, Zouagui S, Ruckly C, Yousfi M, Zertal A, Chouikrat R, Quilici ML, Weill FX, Outbreak of Imported Seventh Pandemic Vibrio cholerae O1 El Tor, Algeria, 2018., Emerg Infect Dis 2022 Jun; 28(6): 1241-1245.
• 2022
  Rouard C, Njamkepo E, Quilici ML, Weill FX, Contribution of microbial genomics to cholera epidemiology., C R Biol 2022 May; 345(1): 37-56.
• 2022
  Collard JM, Andrianonimiadana L, Habib A, Rakotondrainipiana M, Andriantsalama P, Randriamparany R, Rabenandrasana MAN, Weill FX, Sauvonnet N, Randremanana RV, Guillemot V, Vonaesch P, Sansonetti PJ, High prevalence of small intestine bacteria overgrowth and asymptomatic carriage of enteric pathogens in stunted children in Antananarivo, Madagascar., PLoS Negl Trop Dis 2022 May; 16(5): e0009849.
• 2022
  Rakotondrasoa A, Andrianonimiadana LM, Rahajandraibe S, Razafimahatratra S, Andrianaivoarimanana V, Rahelinirina S, Crucitti T, Brisse S, Jeannoda V, Rajerison M, Collard JM, Characterization of Klebsiella pneumoniae isolated from patients suspected of pulmonary or bubonic plague during the Madagascar epidemic in 2017., Sci Rep 2022 Apr; 12(1): 6871.
• 2022
  Larkin L, Pardos de la Gandara M, Hoban A, Pulford C, Jourdan-Da Silva N, de Valk H, Browning L, Falkenhorst G, Simon S, Lachmann R, Dryselius R, Karamehmedovic N, Börjesson S, van Cauteren D, Laisnez V, Mattheus W, Pijnacker R, van den Beld M, Mossong J, Ragimbeau C, Vergison A, Thorstensen Brandal L, Lange H, Garvey P, Nielsen CS, Herrera León S, Varela C, Chattaway M, Weill FX, Brown D, McKeown P, Investigation of an international outbreak of multidrug-resistant monophasic Salmonella Typhimurium associated with chocolate products, EU/EEA and United Kingdom, February to April 2022., Euro Surveill 2022 Apr; 27(15): .
• 2022
  Rambliere L, Kermorvant-Duchemin E, de Lauzanne A, Collard JM, Herindrainy P, Vray M, Garin B, Zo AZ, Rasoanaivo F, Rakotoarimanana Feno Manitra J, Raheliarivao TB, Diouf JN, Ngo V, Lach S, Long P, Borand L, Sok T, Abdou AY, Padget M, Madec Y, Guillemot D, Delarocque-Astagneau E, Huynh BT, , Excess risk of subsequent infection in hospitalized children from a community cohort study in Cambodia and Madagascar., Int J Epidemiol 2022 Oct; 51(5): 1421-1431.
• 2022
  Cherchame E, Guillier L, Lailler R, Vignaud ML, Jourdan-Da Silva N, Le Hello S, Weill FX, Cadel-Six S, Salmonella enterica subsp. enterica Welikade: guideline for phylogenetic analysis of serovars rarely involved in foodborne outbreaks., BMC Genomics 2022 Mar; 23(1): 217.
• 2022
  Shahin K, Zhang L, Mehraban MH, Collard JM, Hedayatkhah A, Mansoorianfar M, Soleimani-Delfan A, Wang R, Clinical and experimental bacteriophage studies: Recommendations for possible approaches for standing against SARS-CoV-2., Microb Pathog 2022 Mar; 164(): 105442.
• 2022
  Yassine I, Lefèvre S, Hansen EE, Ruckly C, Carle I, Lejay-Collin M, Fabre L, Rafei R, Clermont D, de la Gandara MP, Dabboussi F, Thomson NR, Weill FX, , Population structure analysis and laboratory monitoring of Shigella by core-genome multilocus sequence typing., Nat Commun 2022 Jan; 13(1): 551.
• 2022
  Razafimahatratra SL, Menezes A, Wesolowski A, Rafetrarivony L, Cauchemez S, Razafindratsimandresy R, Harimanana A, Crucitti T, Collard JM, Metcalf CJE, , Leveraging serology to titrate immunisation programme functionality for diphtheria in Madagascar., Epidemiol Infect 2022 Jan; 150(): e39.
• 2022
  Zo Andriamanantena, Fanirisoa Randrianarisaona, Maheninasy Rakotondrainipiana, Prisca Andriantsalama, Ravaka Randriamparany, Rindra Randremanana, Frédérique Randrianirina, Sophie Novault, Darragh Duffy, François Huetz, Milena Hasan, Matthieu Schoenhals, Philippe Sansonetti, Pascale Vonaesch, Inès Vigan‑womas, The Afribiota Investigators, Changes in Systemic Regulatory T Cells, Effector T Cells, and Monocyte Populations Associated With Early-Life Stunting, Frontiers in Immunology, 2022, 13, pp.864084. ⟨10.3389/fimmu.2022.864084⟩.
• 2021
  Bizot E, Cointe A, Bidet P, Mariani-Kurkdjian P, Hobson CA, Courroux C, Liguori S, Bridier-Nahmias A, Magnan M, Merimèche M, Caméléna F, Berçot B, Weill FX, Lefèvre S, Bonacorsi S, Birgy A, , Azithromycin resistance in Shiga-toxin Producing Escherichia coli in France between 2004 and 2020 and detection of mef(C)-mph(G) genes., Antimicrob Agents Chemother 2021 Dec; (): AAC0194921.
• 2021
  Smith AM, Weill FX, Njamkepo E, Ngomane HM, Ramalwa N, Sekwadi P, Thomas J, Emergence of Vibrio cholerae O1 Sequence Type 75, South Africa, 2018-2020., Emerg Infect Dis 2021 Nov; 27(11): 2927-2931.
• 2021
  Bizot E, Cointe A, Smadja N, Sergentet D, Lefèvre S, Weill FX, Levy C, Cohen R, Mariani-Kurkdjian P, Bonacorsi S, , Improved molecular diagnosis and culture of the emerging heteropathotype enterohemorrhagic Escherichia coli O80:H2 using its non-melibiose-fermenting and antibiotic-resistance properties., J Clin Microbiol 2021 Sep; (): JCM0153021.
• 2021
  Cointe A, Bizot E, Delannoy S, Fach P, Bidet P, Birgy A, Weill FX, Lefèvre S, Mariani-Kurkdjian P, Bonacorsi S, , Emergence of New ST301 Shiga Toxin-Producing Escherichia coli Clones Harboring Extra-Intestinal Virulence Traits in Europe., Toxins (Basel) 2021 Sep; 13(10): .
• 2021
  Huynh BT, Kermorvant-Duchemin E, Chheang R, Randrianirina F, Seck A, Hariniaina Ratsima E, Andrianirina ZZ, Diouf JB, Abdou AY, Goyet S, Ngo V, Lach S, Pring L, Sok T, Padget M, Sarr FD, Borand L, Garin B, Collard JM, Herindrainy P, de Lauzanne A, Vray M, Delarocque-Astagneau E, Guillemot D, , , Severe bacterial neonatal infections in Madagascar, Senegal, and Cambodia: A multicentric community-based cohort study., PLoS Med 2021 Sep; 18(9): e1003681.
• 2021
  Pascale Vonaesch, Serge Ghislain Djorie, Kaleb Jephté Estimé Kandou, Maheninasy Rakotondrainipiana, Laura Schaeffer, Prisca Vega Andriatsalama, Ravaka Randriamparany, Bolmbaye Privat Gondje, Synthia Nigatoloum, Sonia Sandrine Vondo, Aurélie Etienne, Annick Robinson, Francis Allen Hunald, Lisette Raharimalala, Tamara Giles-Vernick, Laura Tondeur, Frédérique Randrianirina, Alexandra Bastaraud, Jean-Chrysostome Gody, Philippe Jean Sansonetti, Rindra Vatosoa Randremanana, The Afribiota Investigators, Factors Associated with Stunted Growth in Children Under Five Years in Antananarivo, Madagascar and Bangui, Central African Republic., Maternal and Child Health Journal, 2021, 25 (10), pp.1626-1637. ⟨10.1007/s10995-021-03201-8⟩.
• 2021
  Hawkey J, Paranagama K, Baker KS, Bengtsson RJ, Weill FX, Thomson NR, Baker S, Cerdeira L, Iqbal Z, Hunt M, Ingle DJ, Dallman TJ, Jenkins C, Williamson DA, Holt KE, Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei., Nat Commun 2021 May; 12(1): 2684.
• 2021
  Collard JM, Sansonetti P, Papon N, , Taurine Makes Our Microbiota Stronger., Trends Endocrinol Metab 2021 May; 32(5): 259-261.
• 2021
  Azimdine Habib, Lova Andrianonimiadana, Maheninasy Rakotondrainipiana, Prisca Andriantsalama, Ravaka Randriamparany, Rindra Vatosoa Randremanana, Rado Rakotoarison, Inès Vigan‑womas, Armand Rafalimanantsoa, Pascale Vonaesch, Philippe J. Sansonetti, Jean-Marc Collard, The Afribiota Investigators, High prevalence of intestinal parasite infestations among stunted and control children aged 2 to 5 years old in two neighborhoods of Antananarivo, Madagascar, PLoS Neglected Tropical Diseases, 2021, 15 (4), pp.e0009333. ⟨10.1371/journal.pntd.0009333⟩.
• 2021
  Pulford CV, Perez-Sepulveda BM, Canals R, Bevington JA, Bengtsson RJ, Wenner N, Rodwell EV, Kumwenda B, Zhu X, Bennett RJ, Stenhouse GE, Malaka De Silva P, Webster HJ, Bengoechea JA, Dumigan A, Tran-Dien A, Prakash R, Banda HC, Alufandika L, Mautanga MP, Bowers-Barnard A, Beliavskaia AY, Predeus AV, Rowe WPM, Darby AC, Hall N, Weill FX, Gordon MA, Feasey NA, Baker KS, Hinton JCD, , Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa., Nat Microbiol 2021 Mar; 6(3): 327-338.
• 2021
  Breurec S, Franck T, Njamkepo E, Mbecko JR, Rauzier J, Sanke-Waïgana H, Kamwiziku G, Piarroux R, Quilici ML, Weill FX, , Seventh Pandemic Vibrio cholerae O1 Sublineages, Central African Republic., Emerg Infect Dis 2021 Jan; 27(1): 262-266.
• 2020
  Osman M, Papon N, Weill FX, , Endocannabinoids Attenuate the Virulence of Certain Enteropathogenic Bacteria., Trends Microbiol 2020 Dec; (): .
• 2020
  Razafimahatratra SL, Wesolowski A, Rafetrarivony L, Heraud JM, Jones FK, Cauchemez S, Razafindratsimandresy R, Raharinantoanina SJ, Harimanana A, Collard JM, Metcalf CJE, Seroprevalence of pertussis in Madagascar and implications for vaccination., Epidemiol Infect 2020 Nov; 148(): e283.
• 2020
  Oprea* M, Njamkepo* E, Cristea* D, Zhukova* A, Clark CG, Kravetz AN, Monakhova E, Ciontea AS, Cojocaru R, Rauzier J, Damian M, Gascuel O, Quilici ML, Weill FX, , The seventh pandemic of cholera in Europe revisited by microbial genomics., Nat Commun 2020 10; 11(1): 5347.
• 2020
  Chaguza C, Yang M, Cornick JE, du Plessis M, Gladstone RA, Kwambana-Adams BA, Lo SW, Ebruke C, Tonkin-Hill G, Peno C, Senghore M, Obaro SK, Ousmane S, Pluschke G, Collard JM, Sigaùque B, French N, Klugman KP, Heyderman RS, McGee L, Antonio M, Breiman RF, von Gottberg A, Everett DB, Kadioglu A, Bentley SD, Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism., Commun Biol 2020 Oct; 3(1): 559.
• 2020
  Huynh BT, Passet V, Rakotondrasoa A, Diallo T, Kerleguer A, Hennart M, Lauzanne A, Herindrainy P, Seck A, Bercion R, Borand L, Pardos de la Gandara M, Delarocque-Astagneau E, Guillemot D, Vray M, Garin B, Collard JM, Rodrigues C, Brisse S, Klebsiella pneumoniae carriage in low-income countries: antimicrobial resistance, genomic diversity and risk factors., Gut Microbes 2020 Sep; 11(5): 1287-1299.
• 2020
  Mashe T, Domman D, Tarupiwa A, Manangazira P, Phiri I, Masunda K, Chonzi P, Njamkepo E, Ramudzulu M, Mtapuri-Zinyowera S, Smith AM, Weill FX, , Highly Resistant Cholera Outbreak Strain in Zimbabwe., N. Engl. J. Med. 2020 08; 383(7): 687-689.
• 2020
  Huus KE, Rodriguez-Pozo A, Kapel N, Nestoret A, Habib A, Dede M, Manges A, Collard JM, Sansonetti PJ, Vonaesch P, Finlay BB, Immunoglobulin recognition of fecal bacteria in stunted and non-stunted children: findings from the Afribiota study., Microbiome 2020 Jul; 8(1): 113.
• 2020
  Rakotondrasoa A, Passet V, Herindrainy P, Garin B, Kermorvant-Duchemin E, Delarocque-Astagneau E, Guillemot D, Huynh BT, Brisse S, Collard JM, Characterization of Klebsiella pneumoniae isolates from a mother-child cohort in Madagascar., J Antimicrob Chemother 2020 Jul; 75(7): 1736-1746.
• 2020
  Castellanos LR, van der Graaf-van Bloois L, Donado-Godoy P, Veldman K, Duarte F, Acuña MT, Jarquín C, Weill FX, Mevius DJ, Wagenaar JA, Hordijk J, Zomer AL, , Antimicrobial Resistance in Salmonella enterica Serovar Paratyphi B Variant Java in Poultry from Europe and Latin America., Emerging Infect. Dis. 2020 Jun; 26(6): 1164-1173.
• 2020
  Tchuinte PLS, Rabenandrasana MAN, Ramparany L, Ratsima E, Enouf V, Randrianirina F, Collard JM, Genome-based insights into the resistomes and mobilomes of two Providencia rettgeri strains isolated from wound infections in Madagascar., J Glob Antimicrob Resist 2020 Mar; 20(): 178-182.
• 2020
  Zhou Z, Alikhan NF, Mohamed K, Fan Y, , Achtman M, , The EnteroBase user’s guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity., Genome Res. 2020 01; 30(1): 138-152.
• 2019
  Breurec S, Reynaud Y, Frank T, Farra A, Costilhes G, Weill FX, Le Hello S, , Serotype distribution and antimicrobial resistance of human Salmonella enterica in Bangui, Central African Republic, from 2004 to 2013., PLoS Negl Trop Dis 2019 12; 13(12): e0007917.
• 2019
  Chung The H, Boinett C, Pham Thanh D, Jenkins C, Weill FX, Howden BP, Valcanis M, De Lappe N, Cormican M, Wangchuk S, Bodhidatta L, Mason CJ, Nguyen TNT, Ha Thanh T, Voong VP, Duong VT, Nguyen PHL, Turner P, Wick R, Ceyssens PJ, Thwaites G, Holt KE, Thomson NR, Rabaa MA, Baker S, , Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei., Nat Commun 2019 10; 10(1): 4828.
• 2019
  Pouzol S, Tanmoy AM, Ahmed D, Khanam F, Brooks WA, Bhuyan GS, Fabre L, Bryant JE, Gustin MP, Vanhems P, Carman B, Weill FX, Qadri F, Saha S, Endtz H, , Clinical Evaluation of a Multiplex PCR for the Detection of Salmonella enterica Serovars Typhi and Paratyphi A from Blood Specimens in a High-Endemic Setting., Am. J. Trop. Med. Hyg. 2019 09; 101(3): 513-520.
• 2019
  Pulford CV, Perez-Sepulveda BM, Rodwell EV, Weill FX, Baker KS, Hinton JCD, , Salmonella enterica Serovar Panama, an Understudied Serovar Responsible for Extraintestinal Salmonellosis Worldwide., Infect. Immun. 2019 09; 87(9): .
• 2019
  Rabenandrasana MAN, Rafetrarivony LF, Rivoarilala LO, Enouf V, Robinson AL, Rakotozanany A, Vanhomwegen J, Caro V, Von Platen C, Manuguerra JC, Collard JM, Draft Genome Sequence of a Chryseobacterium indologenes Strain Isolated from a Blood Culture of a Hospitalized Child in Antananarivo, Madagascar., Microbiol Resour Announc 2019 Aug; 8(35): .
• 2019
  Criscuolo A, Issenhuth-Jeanjean S, Didelot X, Thorell K, Hale J, Parkhill J, Thomson NR, Weill FX, Falush D, Brisse S, , The speciation and hybridization history of the genus Salmonella., Microb Genom 2019 08; 5(8): .
• 2019
  Hawkey J, Le Hello S, Doublet B, Granier SA, Hendriksen RS, Fricke WF, Ceyssens PJ, Gomart C, Billman-Jacobe H, Holt KE, Weill FX, , Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198., Microb Genom 2019 07; 5(7): .
• 2019
  Bonneault M, Andrianoelina VH, Herindrainy P, Rabenandrasana MAN, Garin B, Breurec S, Delarocque-Astagneau E, Guillemot D, Andrianirina ZZ, Collard JM, Huynh BT, Opatowski L, Transmission Routes of Extended-Spectrum Beta-Lactamase-Producing Enterobacteriaceae in a Neonatology Ward in Madagascar., Am J Trop Med Hyg 2019 Jun; 100(6): 1355-1362.
• 2019
  Cooper LV, Robson A, Trotter CL, Aseffa A, Collard JM, Daugla DM, Diallo A, Hodgson A, Jusot JF, Omotara B, Sow S, Hassan-King M, Manigart O, Nascimento M, Woukeu A, Chandramohan D, Borrow R, Maiden MCJ, Greenwood B, Stuart JM, Risk factors for acquisition of meningococcal carriage in the African meningitis belt., Trop Med Int Health 2019 Apr; 24(4): 392-400.
• 2019
  Frémeaux-Bacchi V, Sellier-Leclerc AL, Vieira-Martins P, Limou S, Kwon T, Lahoche A, Novo R, Llanas B, Nobili F, Roussey G, Cailliez M, Ulinski T, Deschênes G, Alberti C, Weill FX, Mariani P, Loirat C, , Complement Gene Variants and Shiga Toxin-Producing Escherichia coli-Associated Hemolytic Uremic Syndrome: Retrospective Genetic and Clinical Study., Clin J Am Soc Nephrol 2019 03; 14(3): 364-377.
• 2019
  Ouattara M, Whaley MJ, Jenkins LT, Schwartz SB, Traoré RO, Diarra S, Collard JM, Sacchi CT, Wang X, Triplex real-time PCR assay for the detection of Streptococcus pneumoniae, Neisseria meningitidis and Haemophilus influenzae directly from clinical specimens without extraction of DNA., Diagn Microbiol Infect Dis 2019 Mar; 93(3): 188-190.
• 2019
  Nadimpalli M, Fabre L, Yith V, Sem N, Gouali M, Delarocque-Astagneau E, Sreng N, Le Hello S, CTX-M-55-type ESBL-producing Salmonella enterica are emerging among retail meats in Phnom Penh, Cambodia., J Antimicrob Chemother 2019 Feb; 74(2): 342-348.
• 2019
  Nadimpalli M, Vuthy Y, de Lauzanne A, Fabre L, Criscuolo A, Gouali M, Huynh BT, Naas T, Phe T, Borand L, Jacobs J, Kerléguer A, Piola P, Guillemot D, Le Hello S, Delarocque-Astagneau E, Meat and Fish as Sources of Extended-Spectrum β-Lactamase-Producing Escherichia coli, Cambodia., Emerg Infect Dis 2019 Jan; 25(1): 126-31.
• 2019
  Weill FX, Domman D, Njamkepo E, Almesbahi AA, Naji M, Nasher SS, Rakesh A, Assiri AM, Sharma NC, Kariuki S, Pourshafie MR, Rauzier J, Abubakar A, Carter JY, Wamala JF, Seguin C, Bouchier C, Malliavin T, Bakhshi B, Abulmaali HHN, Kumar D, Njoroge SM, Malik MR, Kiiru J, Luquero FJ, Azman AS, Ramamurthy T, Thomson NR, Quilici ML, , Genomic insights into the 2016-2017 cholera epidemic in Yemen., Nature 2019 01; 565(7738): 230-233.
• 2019
  Ung A, Baidjoe AY, Van Cauteren D, Fawal N, Fabre L, Guerrisi C, Danis K, Morand A, Donguy MP, Lucas E, Rossignol L, Lefèvre S, Vignaud ML, Cadel-Six S, Lailler R, Jourdan-Da Silva N, Le Hello S, , Disentangling a complex nationwide Salmonella Dublin outbreak associated with raw-milk cheese consumption, France, 2015 to 2016., Euro Surveill 2019 Jan; 24(3): .
• 2019
  Guyomard-Rabenirina S, Weill FX, Le Hello S, Bastian S, Berger F, Ferdinand S, Legreneur P, Loraux C, Malpote E, Muanza B, Richard V, Talarmin A, Breurec S, , Reptiles in Guadeloupe (French West Indies) are a reservoir of major human Salmonella enterica serovars., PLoS ONE 2019 ; 14(7): e0220145.
• 2019
  Ramamurthy T, Mutreja A, Weill FX, Das B, Ghosh A, Nair GB, , Revisiting the Global Epidemiology of Cholera in Conjuction With the Genomics of Vibrio cholerae., Front Public Health 2019 ; 7(): 203.
• 2019
  Simo Tchuinte PL, Rabenandrasana MAN, Kowalewicz C, Andrianoelina VH, Rakotondrasoa A, Andrianirina ZZ, Enouf V, Ratsima EH, Randrianirina F, Collard JM, Phenotypic and molecular characterisations of carbapenem-resistant Acinetobacter baumannii strains isolated in Madagascar., Antimicrob Resist Infect Control 2019 ; 8(): 31.
• 2018
  Vonaesch P, Morien E, Andrianonimiadana L, Sanke H, Mbecko JR, Huus KE, Naharimanananirina T, Gondje BP, Nigatoloum SN, Vondo SS, Kaleb Kandou JE, Randremanana R, Rakotondrainipiana M, Mazel F, Djorie SG, Gody JC, Finlay BB, Rubbo PA, Wegener Parfrey L, Collard JM, Sansonetti PJ, Stunted childhood growth is associated with decompartmentalization of the gastrointestinal tract and overgrowth of oropharyngeal taxa., Proc Natl Acad Sci U S A 2018 Sep; 115(36): E8489-E8498.
• 2018
  Zhou Z, Lundstrøm I, Tran-Dien A, Duchêne S, Alikhan NF, Sergeant MJ, Langridge G, Fotakis AK, Nair S, Stenøien HK, Hamre SS, Casjens S, Christophersen A, Quince C, Thomson NR, Weill FX, Ho SYW, Gilbert MTP, Achtman M, Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia, Curr Biol. 2018 Aug 6;28(15):2420-2428.e10.
• 2018
  Vonaesch P, Randremanana R, Gody JC, Collard JM, Giles-Vernick T, Doria M, Vigan-Womas I, Rubbo PA, Etienne A, Andriatahirintsoa EJ, Kapel N, Brown E, Huus KE, Duffy D, Finlay BB, Hasan M, Hunald FA, Robinson A, Manirakiza A, Wegener-Parfrey L, Vray M, Sansonetti PJ, Identifying the etiology and pathophysiology underlying stunting and environmental enteropathy: study protocol of the AFRIBIOTA project., BMC Pediatr 2018 Jul; 18(1): 236.
• 2018
  Breurec S, Rafaï C, Onambele M, Frank T, Farra A, Legrand A, Weill FX., Serotype Distribution and Antimicrobial Resistance of Shigella Species in Bangui, Central African Republic, from 2002 to 2013., Am J Trop Med Hyg. 2018 Aug;99(2):283-286..
• 2018
  Baker S, Thomson N, Weill FX, Holt KE, Genomic insights into the emergence and spread of antimicrobial-resistant bacterial pathogens, Science 2018 05;360(6390):733-738.
• 2018
  Baker KS, Dallman TJ, Field N, Childs T, Mitchell H, Day M, Weill FX, Lefèvre S, Tourdjman M, Hughes G, Jenkins C, Thomson N, Genomic epidemiology of Shigella in the United Kingdom shows transmission of pathogen sublineages and determinants of antimicrobial resistance, Sci Rep 2018 May;8(1):7389.
• 2018
  Baker KS, Dallman TJ, Field N, Childs T, Mitchell H, Day M, Weill FX, Lefèvre S, Tourdjman M, Hughes G, Jenkins C, Thomson N, Horizontal antimicrobial resistance transfer drives epidemics of multiple Shigella species, Nat Commun 2018 Apr;9(1):1462.
• 2018
  Rakotondrasoa A, Issack MI, Garin B, Biot F, Valade E, Wattiau P, Allou N, Belmonte O, Bibi J, Price EP, Collard JM, Melioidosis in the Western Indian Ocean and the Importance of Improving Diagnosis, Surveillance, and Molecular Typing., Trop Med Infect Dis 2018 Mar; 3(1): .
• 2018
  Nadimpalli M, Delarocque-Astagneau E, Love DC, Price LB, Huynh BT, Collard JM, Lay KS, Borand L, Ndir A, Walsh TR, Guillemot D, Combating Global Antibiotic Resistance: Emerging One Health Concerns in Lower- and Middle-Income Countries., Clin Infect Dis 2018 Mar; 66(6): 963-969.
• 2018
  Herindrainy P, Rabenandrasana MAN, Andrianirina ZZ, Rakotoarimanana FMJ, Padget M, de Lauzanne A, Ndir A, Kermorvant-Duchemin E, Garin B, Piola P, Collard JM, Guillemot D, Huynh BT, Delarocque-Astagneau E, Acquisition of extended spectrum beta-lactamase-producing enterobacteriaceae in neonates: A community based cohort in Madagascar., PLoS One 2018 ; 13(3): e0193325.
• 2018
  Diallo K, Coulibaly MD, Rebbetts LS, Harrison OB, Lucidarme J, Gamougam K, Tekletsion YK, Bugri A, Toure A, Issaka B, Dieng M, Trotter C, Collard JM, Sow SO, Wang X, Mayer LW, Borrow R, Greenwood BM, Maiden MCJ, Manigart O, Development of a PCR algorithm to detect and characterize Neisseria meningitidis carriage isolates in the African meningitis belt., PLoS One 2018 ; 13(12): e0206453.
• 2017
  Tran-Dien A, Le Hello S, Bouchier C, Weill FX, Early transmissible ampicillin resistance in zoonotic Salmonella enterica serotype Typhimurium in the late 1950s: a retrospective, whole-genome sequencing study, Lancet Infect Dis 2018 Feb;18(2):207-214.
• 2017
  Domman D, Quilici ML, Dorman MJ, Njamkepo E, Mutreja A, Mather AE, Delgado G, Morales-Espinosa R, Grimont PAD, Lizárraga-Partida ML, Bouchier C, Aanensen DM, Kuri-Morales P, Tarr CL, Dougan G, Parkhill J, Campos J, Cravioto A, Weill FX, Thomson NR, Integrated view of Vibrio cholerae in the Americas, Science 2017 11;358(6364):789-793.
• 2017
  Weill FX, Domman D, Njamkepo E, Tarr C, Rauzier J, Fawal N, Keddy KH, Salje H, Moore S, Mukhopadhyay AK, Bercion R, Luquero FJ, Ngandjio A, Dosso M, Monakhova E, Garin B, Bouchier C, Pazzani C, Mutreja A, Grunow R, Sidikou F, Bonte L, Breurec S, Damian M, Njanpop-Lafourcade BM, Sapriel G, Page AL, Hamze M, Henkens M, Chowdhury G, Mengel M, Koeck JL, Fournier JM, Dougan G, Grimont PAD, Parkhill J, Holt KE, Piarroux R, Ramamurthy T, Quilici ML, Thomson NR, Genomic history of the seventh pandemic of cholera in Africa, Science 2017 11;358(6364):785-789.
• 2017
  Kuijpers LMF, Phe T, Veng CH, Lim K, Ieng S, Kham C, Fawal N, Fabre L, Le Hello S, Vlieghe E, Weill FX, Jacobs J, Peetermans WE, The clinical and microbiological characteristics of enteric fever in Cambodia, 2008-2015, PLoS Negl Trop Dis 2017 Sep;11(9):e0005964.
• 2017
  Raharimalala FN, Andrianinarivomanana TM, Rakotondrasoa A, Collard JM, Boyer S, Usefulness and accuracy of MALDI-TOF mass spectrometry as a supplementary tool to identify mosquito vector species and to invest in development of international database., Med Vet Entomol 2017 Sep; 31(3): 289-298.
• 2017
  Mahy P, Collard JM, Gala JL, Herman P, Groof D, Quoilin S, Sneyers M, Health crises due to infectious and communicable diseases : European preparedness and response tools in an international context., J Bus Contin Emer Plan 2017 Jun; 10(4): 353-366.
• 2017
  Jusot JF, Neill DR, Waters EM, Bangert M, Collins M, Bricio Moreno L, Lawan KG, Moussa MM, Dearing E, Everett DB, Collard JM, Kadioglu A, Airborne dust and high temperatures are risk factors for invasive bacterial disease., J Allergy Clin Immunol 2017 Mar; 139(3): 977-986.e2.
• 2017
  Cornick JE, Tastan Bishop Ö, Yalcin F, Kiran AM, Kumwenda B, Chaguza C, Govindpershad S, Ousmane S, Senghore M, du Plessis M, Pluschke G, Ebruke C, McGee L, Sigaùque B, Collard JM, Bentley SD, Kadioglu A, Antonio M, von Gottberg A, French N, Klugman KP, Heyderman RS, Alderson M, Everett DB, The global distribution and diversity of protein vaccine candidate antigens in the highly virulent Streptococcus pnuemoniae serotype 1., Vaccine 2017 Feb; 35(6): 972-980.
• 2017
  Gay N, Belmonte O, Collard JM, Halifa M, Issack MI, Mindjae S, Palmyre P, Ibrahim AA, Rasamoelina H, Flachet L, Filleul L, Cardinale E, Review of Antibiotic Resistance in the Indian Ocean Commission: A Human and Animal Health Issue., Front Public Health 2017 ; 5(): 162.
• 2017
  Cooper LV, Boukary RM, Aseffa A, Mihret W, Collard JM, Daugla D, Hodgson A, Sokhna C, Omotara B, Sow S, Quaye SL, Diallo K, Manigart O, Maiden MCJ, Findlow H, Borrow R, Stuart JM, Greenwood BM, Trotter CL, Investigation of correlates of protection against pharyngeal carriage of Neisseria meningitidis genogroups W and Y in the African meningitis belt., PLoS One 2017 ; 12(8): e0182575.
• 2016
  , Household transmission of Neisseria meningitidis in the African meningitis belt: a longitudinal cohort study., Lancet Glob Health 2016 Dec; 4(12): e989-e995.
• 2016
  Duchêne S, Holt KE, Weill FX, Le Hello S, Hawkey J, Edwards DJ, Fourment M, Holmes EC, Genome-scale rates of evolutionary change in bacteria, Microb Genom 2016 Nov;2(11):e000094.
• 2016
  Kuijpers LM, Le Hello S, Fawal N, Fabre L, Tourdjman M, Dufour M, Sar D, Kham C, Phe T, Vlieghe E, Bouchier C, Jacobs J, Weill FX, Genomic analysis of Salmonella enterica serotype Paratyphi A during an outbreak in Cambodia, 2013-2015, Microb Genom 2016 Nov;2(11):e000092.
• 2016
  Padget M, Tamarelle J, Herindrainy P, Ndir A, Diene Sarr F, Richard V, Piola P, Guillemot D, Delarocque-Astagneau E, A community survey of antibiotic consumption among children in Madagascar and Senegal: the importance of healthcare access and care quality., J Antimicrob Chemother 2017 Feb; 72(2): 564-573.
• 2016
  Chaguza C, Cornick JE, Harris SR, Andam CP, Bricio-Moreno L, Yang M, Yalcin F, Ousmane S, Govindpersad S, Senghore M, Ebruke C, Du Plessis M, Kiran AM, Pluschke G, Sigauque B, McGee L, Klugman KP, Turner P, Corander J, Parkhill J, Collard JM, Antonio M, von Gottberg A, Heyderman RS, French N, Kadioglu A, Hanage WP, Everett DB, Bentley SD, Understanding pneumococcal serotype 1 biology through population genomic analysis., BMC Infect Dis 2016 Nov; 16(1): 649.
• 2016
  Azman AS, Parker LA, Rumunu J, Tadesse F, Grandesso F, Deng LL, Lino RL, Bior BK, Lasuba M, Page AL, Ontweka L, Llosa AE, Cohuet S, Pezzoli L, Sodjinou DV, Abubakar A, Debes AK, Mpairwe AM, Wamala JF, Jamet C, Lessler J, Sack DA, Quilici ML, Ciglenecki I, Luquero FJ, Effectiveness of one dose of oral cholera vaccine in response to an outbreak: a case-cohort study, Lancet Glob Health 2016 Nov;4(11):e856-e863.
• 2016
  Wong VK, Baker S, Connor TR, Pickard D, Page AJ, Dave J, Murphy N, Holliman R, Sefton A, Millar M, Dyson ZA, Dougan G, Holt KE,, An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid, Nat Commun 2016 Oct;7:12827.
• 2016
  Njamkepo E, Fawal N, Tran-Dien A, Hawkey J, Strockbine N, Jenkins C, Talukder KA, Bercion R, Kuleshov K, Kolínská R, Russell JE, Kaftyreva L, Accou-Demartin M, Karas A, Vandenberg O, Mather AE, Mason CJ, Page AJ, Ramamurthy T, Bizet C, Gamian A, Carle I, Sow AG, Bouchier C, Wester AL, Lejay-Collin M, Fonkoua MC, Le Hello S, Blaser MJ, Jernberg C, Ruckly C, Mérens A, Page AL, Aslett M, Roggentin P, Fruth A, Denamur E, Venkatesan M, Bercovier H, Bodhidatta L, Chiou CS, Clermont D, Colonna B, Egorova S, Pazhani GP, Ezernitchi AV, Guigon G, Harris SR, Izumiya H, Korzeniowska-Kowal A, Lutyńska A, Gouali M, Grimont F, Langendorf C, Marejková M, Peterson LA, Perez-Perez G, Ngandjio A, Podkolzin A, Souche E, Makarova M, Shipulin GA, Ye C, Žemličková H, Herpay M, Grimont PA, Parkhill J, Sansonetti P, Holt KE, Brisse S, Thomson NR, Weill FX, Erratum: Global phylogeography and evolutionary history of Shigella dysenteriae type 1, Nat Microbiol 2016 10;1(11):16209.
• 2016
  Wong VK, Holt KE, Okoro C, Baker S, Pickard DJ, Marks F, Page AJ, Olanipekun G, Munir H, Alter R, Fey PD, Feasey NA, Weill FX, Le Hello S, Hart PJ, Kariuki S, Breiman RF, Gordon MA, Heyderman RS, Jacobs J, Lunguya O, Msefula C, MacLennan CA, Keddy KH, Smith AM, Onsare RS, De Pinna E, Nair S, Amos B, Dougan G, Obaro S, Molecular Surveillance Identifies Multiple Transmissions of Typhoid in West Africa, PLoS Negl Trop Dis 2016 Sep;10(9):e0004781.
• 2016
  Baker KS, Dallman TJ, Behar A, Weill FX, Gouali M, Sobel J, Fookes M, Valinsky L, Gal-Mor O, Connor TR, Nissan I, Bertrand S, Parkhill J, Jenkins C, Cohen D, Thomson NR, Travel- and Community-Based Transmission of Multidrug-Resistant Shigella sonnei Lineage among International Orthodox Jewish Communities, Emerging Infect. Dis. 2016 Sep;22(9):1545-53.
• 2016
  Dallman T, Inns T, Jombart T, Ashton P, Loman N, Chatt C, Messelhaeusser U, Rabsch W, Simon S, Nikisins S, Bernard H, le Hello S, Jourdan da-Silva N, Kornschober C, Mossong J, Hawkey P, de Pinna E, Grant K, Cleary P, Phylogenetic structure of European Salmonella Enteritidis outbreak correlates with national and international egg distribution network, Microb Genom 2016 Aug;2(8):e000070.
• 2016
  Connor TR, Owen SV, Langridge G, Connell S, Nair S, Reuter S, Dallman TJ, Corander J, Tabing KC, Le Hello S, Fookes M, Doublet B, Zhou Z, Feltwell T, Ellington MJ, Herrera S, Gilmour M, Cloeckaert A, Achtman M, Parkhill J, Wain J, De Pinna E, Weill FX, Peters T, Thomson N, What’s in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B, MBio 2016;7(4).
• 2016
  Feasey NA, Hadfield J, Keddy KH, Dallman TJ, Jacobs J, Deng X, Wigley P, Barquist Barquist L, Langridge GC, Feltwell T, Harris SR, Mather AE, Fookes M, Aslett M, Msefula C, Kariuki S, Maclennan CA, Onsare RS, Weill FX, Le Hello S, Smith AM, McClelland M, Desai P, Parry CM, Cheesbrough J, French N, Campos J, Chabalgoity JA, Betancor L, Hopkins KL, Nair S, Humphrey TJ, Lunguya O, Cogan TA, Tapia MD, Sow SO, Tennant SM, Bornstein K, Levine MM, Lacharme-Lora L, Everett DB, Kingsley RA, Parkhill J, Heyderman RS, Dougan G, Gordon MA, Thomson NR, Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings, Nat. Genet. 2016 Aug;.
• 2016
  Bale J, Meunier D, Weill FX, dePinna E, Peters T, Nair S, Characterisation of new Salmonella serovars by whole genome sequencing and traditional typing techniques, J. Med. Microbiol. 2016 Aug;.
• 2016
  Céline M. Gossner, Simon Le Hello, Birgitta de Jong, Per Rolfhamre, Daniel Faensen, François-Xavier Weill, Johan Giesecke, Around the World in 1,475 Salmonella Geo-serotypes, Emerg Infect Dis, 2016 Jul; 22(7):1298-1302.
• 2016
  Diallo K, Trotter C, Timbine Y, Tamboura B, Sow SO, Issaka B, Dano ID, Collard JM, Dieng M, Diallo A, Mihret A, Ali OA, Aseffa A, Quaye SL, Bugri A, Osei I, Gamougam K, Mbainadji L, Daugla DM, Gadzama G, Sambo ZB, Omotara BA, Bennett JS, Rebbetts LS, Watkins ER, Nascimento M, Woukeu A, Manigart O, Borrow R, Stuart JM, Greenwood BM, Maiden MCJ, Pharyngeal carriage of Neisseria species in the African meningitis belt., J Infect 2016 Jun; 72(6): 667-677.
• 2016
  Njamkepo E, Fawal N, Tran-Dien A, Hawkey J, Strockbine N, Jenkins C, Talukder KA, Bercion R, Kuleshov K, Kolínská R, Russell JE, Kaftyreva L, Accou-Demartin M, Karas A, Vandenberg O, Mather AE, Mason CJ, Page AJ, Ramamurthy T, Bizet C, Gamian A, Carle I, Sow AG, Bouchier C, Wester AL, Lejay-Collin M, Fonkoua MC, Le Hello S, Blaser MJ, Jernberg C, Ruckly C, Mérens A, Page AL, Aslett M, Roggentin P, Fruth A, Denamur E, Venkatesan M, Bercovier H, Bodhidatta L, Chiou CS, Clermont D, Colonna B, Egorova S, Pazhani GP, Ezernitchi AV, Guigon G, Harris SR, Izumiya H, Korzeniowska-Kowal A, Lutyńska A, Gouali M, Grimont F, Langendorf C, Marejková M, Peterson LA, Perez-Perez G, Ngandjio A, Podkolzin A, Souche E, Makarova M, Shipulin GA, Ye C, Žemličková H, Herpay M, Grimont PA, Parkhill J, Sansonetti P, Holt KE, Brisse S, Thomson NR, Weill FX, , Global phylogeography and evolutionary history of Shigella dysenteriae type 1., Nat Microbiol 2016 03; 1(): 16027.
• 2016
  Leekitcharoenphon P, Hendriksen RS, Le Hello S, Weill FX, Baggesen DL, Jun SR, Ussery DW, Lund O, Crook DW, Wilson DJ, Aarestrup FM, Global genomic epidemiology of Salmonella Typhimurium DT104, Appl. Environ. Microbiol. 2016 Mar;.
• 2016
  Makendi C, Page AJ, Wren BW, Le Thi Phuong T, Clare S, Hale C, Goulding D, Klemm EJ, Pickard D, Okoro C, Hunt M, Thompson CN, Phu Huong Lan N, Tran Do Hoang N, Thwaites GE, Le Hello S, Brisabois A, Weill FX, Baker S, Dougan G, A Phylogenetic and Phenotypic Analysis of Salmonella enterica Serovar Weltevreden, an Emerging Agent of Diarrheal Disease in Tropical Regions, PLoS Negl Trop Dis 2016 Feb;10(2):e0004446.
• 2016
  Commereuc M, Weill FX, Loukiadis E, Gouali M, Gleizal A, Kormann R, Ridel C, Frémeaux-Bacchi V, Rondeau E, Hertig A, Recurrent Hemolytic and Uremic Syndrome Induced by Escherichia Coli, Medicine (Baltimore) 2016 Jan;95(1):e2050.
• 2016
  Manigart O, Trotter C, Findlow H, Assefa A, Mihret W, Moti Demisse T, Yeshitela B, Osei I, Hodgson A, Quaye SL, Sow S, Coulibaly M, Diallo K, Traore A, Collard JM, Moustapha Boukary R, Djermakoye O, Mahamane AE, Jusot JF, Sokhna C, Alavo S, Doucoure S, Ba el H, Dieng M, Diallo A, Daugla DM, Omotara B, Chandramohan D, Hassan-King M, Nascimento M, Woukeu A, Borrow R, Stuart JM, Greenwood B, A Seroepidemiological Study of Serogroup A Meningococcal Infection in the African Meningitis Belt., PLoS One 2016 ; 11(2): e0147928.
• 2016
  Vuong J, Collard JM, Whaley MJ, Bassira I, Seidou I, Diarra S, Ouédraogo RT, Kambiré D, Taylor TH, Sacchi C, Mayer LW, Wang X, Development of Real-Time PCR Methods for the Detection of Bacterial Meningitis Pathogens without DNA Extraction., PLoS One 2016 ; 11(2): e0147765.
• 2016
  Manigart O, Trotter C, Findlow H, Aseffa A, Mihret W, Moti Demisse T, Yeshitela B, Osei I, Hodgson A, Quaye SL, Sow S, Coulibaly M, Diallo K, Traore A, Collard JM, Moustapha Boukary R, Djermakoye O, Mahamane AE, Jusot JF, Sokhna C, Alavo S, Doucoure S, Ba EH, Dieng M, Diallo A, Daugla DM, Omotara B, Chandramohan D, Hassan-King M, Nascimento M, Woukeu A, Borrow R, Stuart JM, Greenwood B, Correction: A Seroepidemiological Study of Serogroup A Meningococcal Infection in the African Meningitis Belt., PLoS One 2016 ; 11(7): e0158938.
• 2015
  Diomandé FV, Djingarey MH, Daugla DM, Novak RT, Kristiansen PA, Collard JM, Gamougam K, Kandolo D, Mbakuliyemo N, Mayer L, Stuart J, Clark T, Tevi-Benissan C, Perea WA, Preziosi MP, Marc LaForce F, Caugant D, Messonnier N, Walker O, Greenwood B, Public Health Impact After the Introduction of PsA-TT: The First 4 Years., Clin Infect Dis 2015 Nov; 61 Suppl 5(Suppl 5): S467-72.
• 2015
  Yue M, Han X, De Masi L, Zhu C, Ma X, Zhang J, Wu R, Schmieder R, Kaushik RS, Fraser GP, Zhao S, McDermott PF, Weill FX, Mainil JG, Arze C, Fricke WF, Edwards RA, Brisson D, Zhang NR, Rankin SC, Schifferli DM, Allelic variation contributes to bacterial host specificity, Nat Commun 2015;6:8754.
• 2015
  , The Diversity of Meningococcal Carriage Across the African Meningitis Belt and the Impact of Vaccination With a Group A Meningococcal Conjugate Vaccine., J Infect Dis 2015 Oct; 212(8): 1298-307.
• 2015
  Deshayes S, Daurel C, Cattoir V, Parienti JJ, Quilici ML, de La Blanchardière A, Non-O1, non-O139 Vibrio cholerae bacteraemia: case report and literature review, Springerplus 2015;4:575.
• 2015
  Zhu C, Yue M, Rankin S, Weill FX, Frey J, Schifferli DM, One-step identification of five prominent chicken Salmonella serovars and biotypes, J. Clin. Microbiol. 2015 Sep;.
• 2015
  Ktari S, Le Hello S, Ksibi B, Courdavault L, Mnif B, Maalej S, Fabre L, Hammami A, Weill FX, Carbapenemase-producing Salmonella enterica serotype Kentucky ST198, North Africa, J. Antimicrob. Chemother. 2015 Sep;.
• 2015
  Connor TR, Barker CR, Baker KS, Weill FX, Talukder KA, Smith AM, Baker S, Gouali M, Pham Thanh D, Jahan Azmi I, Dias da Silveira W, Semmler T, Wieler LH, Jenkins C, Cravioto A, Faruque SM, Parkhill J, Wook Kim D, Keddy KH, Thomson NR, Species-wide whole genome sequencing reveals historical global spread and recent local persistence in Shigella flexneri, Elife 2015;4:e07335.
• 2015
  Cornick JE, Chaguza C, Harris SR, Yalcin F, Senghore M, Kiran AM, Govindpershad S, Ousmane S, Plessis MD, Pluschke G, Ebruke C, McGee L, Sigaùque B, Collard JM, Antonio M, von Gottberg A, French N, Klugman KP, Heyderman RS, Bentley SD, Everett DB, For The PAGe Consortium, Region-specific diversification of the highly virulent serotype 1 Streptococcus pneumoniae., Microb Genom 2015 Aug; 1(2): e000027.
• 2015
  Van Cauteren D, De Valk H, Sommen C, King LA, Jourdan-Da Silva N, Weill FX, Hello SL, Mégraud F, Vaillant V, Desenclos JC, Community Incidence of Campylobacteriosis and Nontyphoidal Salmonellosis, France, 2008-2013, Foodborne Pathog. Dis. 2015 Aug;12(8):664-9.
• 2015
  Kriem MR, Banni B, El Bouchtaoui H, Hamama A, El Marrakchi A, Chaouqy N, Robert-Pillot A, Quilici ML, Prevalence of Vibrio spp. in raw shrimps (Parapenaeus longirostris) and performance of a chromogenic medium for the isolation of Vibrio strains, Lett. Appl. Microbiol. 2015 Sep;61(3):224-30.
• 2015
  Alio Sanda A, Granger Farbos A, Hamidou AA, Vonaesch P, Jusot JF, Koeck JL, Collard JM, MLVA-typing on Streptococcus pneumoniae serotype 1 isolated from meningitis cases in Niger before the introduction of PCV-13 revealed a low genetic diversity., Trans R Soc Trop Med Hyg 2015 Jul; 109(7): 477-80.
• 2015
  Rossi O, Baker KS, Phalipon A, Weill FX, Citiulo F, Sansonetti P, Gerke C, Thomson NR, Draft genomes of Shigella strains used by the STOPENTERICS consortium, Gut Pathog 2015;7:14.
• 2015
  Le Hello S, Maillard F, Mallet HP, Daudens E, Levy M, Roy V, Branaa P, Bertrand S, Fabre L, Weill FX, Salmonella enterica serotype enteritidis in French Polynesia, South Pacific, 2008-2013, Emerging Infect. Dis. 2015 Jun;21(6):1045-8.
• 2015
  Wong VK, Baker S, Pickard DJ, Parkhill J, Page AJ, Feasey NA, Kingsley RA, Thomson NR, Keane JA, Weill FX, Edwards DJ, Hawkey J, Harris SR, Mather AE, Cain AK, Hadfield J, Hart PJ, Thieu NT, Klemm EJ, Glinos DA, Breiman RF, Watson CH, Kariuki S, Gordon MA, Heyderman RS, Okoro C, Jacobs J, Lunguya O, Edmunds WJ, Msefula C, Chabalgoity JA, Kama M, Jenkins K, Dutta S, Marks F, Campos J, Thompson C, Obaro S, MacLennan CA, Dolecek C, Keddy KH, Smith AM, Parry CM, Karkey A, Mulholland EK, Campbell JI, Dongol S, Basnyat B, Dufour M, Bandaranayake D, Naseri TT, Singh SP, Hatta M, Newton P, Onsare RS, Isaia L, Dance D, Davong V, Thwaites G, Wijedoru L, Crump JA, De Pinna E, Nair S, Nilles EJ, Thanh DP, Turner P, Soeng S, Valcanis M, Powling J, Dimovski K, Hogg G, Farrar J, Holt KE, Dougan G, Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events, Nat. Genet. 2015 Jun;47(6):632-9.
• 2015
  Mazi W, Sangal V, Saeed A, Sandstrom G, Weill FX, Yu J, Rapid Genotyping of Shigella sonnei by Use of Multiplex High-Resolution Melting, J. Clin. Microbiol. 2015 Jul;53(7):2389-91.
• 2015
  Baker KS, Dallman TJ, Ashton PM, Day M, Hughes G, Crook PD, Gilbart VL, Zittermann S, Allen VG, Howden BP, Tomita T, Valcanis M, Harris SR, Connor TR, Sintchenko V, Howard P, Brown JD, Petty NK, Gouali M, Thanh DP, Keddy KH, Smith AM, Talukder KA, Faruque SM, Parkhill J, Baker S, Weill FX, Jenkins C, Thomson NR, Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study, Lancet Infect Dis 2015 Aug;15(8):913-21.
• 2015
  Baltazar M, Ngandjio A, Holt KE, Lepillet E, Pardos de la Gandara M, Collard JM, Bercion R, Nzouankeu A, Le Hello S, Dougan G, Fonkoua MC, Weill FX, Multidrug-resistant Salmonella enterica serotype Typhi, Gulf of Guinea Region, Africa., Emerg Infect Dis 2015 Apr; 21(4): 655-9.
• 2015
  Langendorf C, Le Hello S, Moumouni A, Gouali M, Mamaty AA, Grais RF, Weill FX, Page AL, Enteric bacterial pathogens in children with diarrhea in Niger: diversity and antimicrobial resistance, PLoS ONE 2015;10(3):e0120275.
• 2015
  Sola C, Abadia E, Le Hello S, Weill FX, High-Throughput CRISPR Typing of Mycobacterium tuberculosis Complex and Salmonella enterica Serotype Typhimurium, Methods Mol. Biol. 2015;1311:91-109.
• 2015
  Mattheus W, Hanquet G, Collard JM, Vanhoof R, Bertrand S, Changes in Meningococcal Strains in the Era of a Serogroup C Vaccination Campaign: Trends and Evolution in Belgium during the Period 1997-2012., PLoS One 2015 ; 10(10): e0139615.
• 2014
  Bialek-Davenet S, Criscuolo A, Ailloud F, Passet V, Jones L, Delannoy-Vieillard AS, Garin B, Le Hello S, Arlet G, Nicolas-Chanoine MH, Decré D, Brisse S, Genomic definition of hypervirulent and multidrug-resistant Klebsiella pneumoniae clonal groups, Emerging Infect. Dis. 2014 Nov;20(11):1812-20.
• 2014
  Pedersen K, Sørensen G, Szabo I, Hächler H, Le Hello S, Repeated isolation of Salmonella enterica Goverdhan, a very rare serovar, from Danish poultry surveillance samples, Vet. Microbiol. 2014 Dec;174(3-4):596-9.
• 2014
  Zhou Z, McCann A, Weill FX, Blin C, Nair S, Wain J, Dougan G, Achtman M, Transient Darwinian selection in Salmonella enterica serovar Paratyphi A during 450 years of global spread of enteric fever, Proc. Natl. Acad. Sci. U.S.A. 2014 Aug;111(33):12199-204.
• 2014
  Robert-Pillot A, Copin S, Himber C, Gay M, Quilici ML, Occurrence of the three major Vibrio species pathogenic for human in seafood products consumed in France using real-time PCR, Int. J. Food Microbiol. 2014 Oct;189:75-81.
• 2014
  Issenhuth-Jeanjean S, Roggentin P, Mikoleit M, Guibourdenche M, de Pinna E, Nair S, Fields PI, Weill FX, Supplement 2008-2010 (no. 48) to the White-Kauffmann-Le Minor scheme, Res. Microbiol. 2014 Sep;165(7):526-30.
• 2014
  Jusot V, Aberrane S, Alé F, Laouali B, Moussa I, Alio SA, Adehossi E, Collard JM, Grais RF, Prevalence of Bordetella infection in a hospital setting in niamey, niger., J Trop Pediatr 2014 Jun; 60(3): 223-30.
• 2014
  Luquero FJ, Grout L, Ciglenecki I, Sakoba K, Traore B, Heile M, Diallo AA, Itama C, Page AL, Quilici ML, Mengel MA, Eiros JM, Serafini M, Legros D, Grais RF, Use of Vibrio cholerae vaccine in an outbreak in Guinea, N. Engl. J. Med. 2014 May;370(22):2111-20.
• 2014
  Paireau J, Maïnassara HB, Jusot JF, Collard JM, Idi I, Moulia-Pelat JP, Mueller JE, Fontanet A, Spatio-temporal factors associated with meningococcal meningitis annual incidence at the health centre level in Niger, 2004-2010., PLoS Negl Trop Dis 2014 May; 8(5): e2899.
• 2014
  Ley B, Le Hello S, Lunguya O, Lejon V, Muyembe JJ, Weill FX, Jacobs J, Invasive Salmonella enterica serotype typhimurium infections, Democratic Republic of the Congo, 2007-2011, Emerging Infect. Dis. 2014 Apr;20(4):701-4.
• 2014
  Page AL, Jusot V, Mamaty AA, Adamou L, Kaplon J, Pothier P, Djibo A, Manzo ML, Toure B, Langendorf C, Collard JM, Grais RF, Rotavirus surveillance in urban and rural areas of Niger, April 2010-March 2012., Emerg Infect Dis 2014 Apr; 20(4): 573-80.
• 2014
  Gay N, Le Hello S, Weill FX, de Thoisy B, Berger F, Salmonella serotypes in reptiles and humans, French Guiana, Vet. Microbiol. 2014 May;170(1-2):167-71.
• 2014
  Fabre L, Le Hello S, Roux C, Issenhuth-Jeanjean S, Weill FX, CRISPR is an optimal target for the design of specific PCR assays for salmonella enterica serotypes Typhi and Paratyphi A, PLoS Negl Trop Dis 2014;8(1):e2671.
• 2014
  Baucheron S, Monchaux I, Le Hello S, Weill FX, Cloeckaert A, Lack of efflux mediated quinolone resistance in Salmonella enterica serovars Typhi and Paratyphi A, Front Microbiol 2014;5:12.
• 2014
  Jones G, Le Hello S, Jourdan-da Silva N, Vaillant V, de Valk H, Weill F, Le Strat Y, The French human Salmonella surveillance system: evaluation of timeliness of laboratory reporting and factors associated with delays, 2007 to 2011, Euro Surveill. 2014 Jan;19(1).
• 2014
  Collard JM, Wang X, Mahamane AE, Idi I, Issaka B, Ousseni M, Mayer LW, Nato F, Moulia-Pelat JP, A five-year field assessment of rapid diagnostic tests for meningococcal meningitis in Niger by using the combination of conventional and real-time PCR assays as a gold standard., Trans R Soc Trop Med Hyg 2014 Jan; 108(1): 6-12.
• 2013
  Le Hello S, Bekhit A, Granier SA, Barua H, Beutlich J, Zając M, Münch S, Sintchenko V, Bouchrif B, Fashae K, Pinsard JL, Sontag L, Fabre L, Garnier M, Guibert V, Howard P, Hendriksen RS, Christensen JP, Biswas PK, Cloeckaert A, Rabsch W, Wasyl D, Doublet B, Weill FX, The global establishment of a highly-fluoroquinolone resistant Salmonella enterica serotype Kentucky ST198 strain, Front Microbiol 2013;4:395.
• 2013
  Collard JM, Issaka B, Zaneidou M, Hugonnet S, Nicolas P, Taha MK, Greenwood B, Jusot JF, Epidemiological changes in meningococcal meningitis in Niger from 2008 to 2011 and the impact of vaccination., BMC Infect Dis 2013 Dec; 13(): 576.
• 2013
  Bierry G, Lefevre S, Dietemann JL, Jehl F, In vivo macrophage imaging using MR targeted contrast agent for longitudinal evaluation of septic arthritis, J Vis Exp 2013 Oct;(80):e50296.
• 2013
  Compain F, Poisson A, Le Hello S, Branger C, Weill FX, Arlet G, Decré D, Targeting relaxase genes for classification of the predominant plasmids in Enterobacteriaceae, Int. J. Med. Microbiol. 2014 May;304(3-4):236-42.
• 2013
  Tourdjman M, Le Hello S, Gossner C, Delmas G, Tubiana S, Fabre L, Kerléguer A, Tarantola A, Fruth A, Friesema I, Thorstensen Brandal L, Lawrence J, Fisher I, Dufour M, Weill FX, de Valk H, Unusual increase in reported cases of paratyphoid A fever among travellers returning from Cambodia, January to September 2013, Euro Surveill. 2013 Sep;18(39).
• 2013
  Harrois D, Breurec S, Seck A, Delauné A, Le Hello S, Pardos de la Gándara M, Sontag L, Perrier-Gros-Claude JD, Sire JM, Garin B, Weill FX, Prevalence and characterization of extended-spectrum β-lactamase-producing clinical Salmonella enterica isolates in Dakar, Senegal, from 1999 to 2009, Clin. Microbiol. Infect. 2014 Feb;20(2):O109-16.
• 2013
  Larsson JT, Torpdahl M, , Møller Nielsen E, Proof-of-concept study for successful inter-laboratory comparison of MLVA results, Euro Surveill. 2013 Aug;18(35):20566.
• 2013
  Nadon CA, Trees E, Ng LK, Møller Nielsen E, Reimer A, Maxwell N, Kubota KA, Gerner-Smidt P, , Development and application of MLVA methods as a tool for inter-laboratory surveillance, Euro Surveill. 2013 Aug;18(35):20565.
• 2013
  Martinez-Pino I, Luquero FJ, Sakoba K, Sylla S, Haile M, Grais RF, Ciglenecki I, Quilici ML, Page AL, Use of a cholera rapid diagnostic test during a mass vaccination campaign in response to an epidemic in Guinea, 2012, PLoS Negl Trop Dis 2013;7(8):e2366.
• 2013
  Kerouanton A, Rose V, Weill FX, Granier SA, Denis M, Genetic diversity and antimicrobial resistance profiles of Salmonella enterica serotype derby isolated from pigs, pork, and humans in France, Foodborne Pathog. Dis. 2013 Nov;10(11):977-84.
• 2013
  Zając M, Wasyl D, Hoszowski A, Le Hello S, Szulowski K, Genetic lineages of Salmonella enterica serovar Kentucky spreading in pet reptiles, Vet. Microbiol. 2013 Oct;166(3-4):686-9.
• 2013
  Sire JM, Garin B, Chartier L, Fall NK, Tall A, Seck A, Weill FX, Breurec S, Vray M, Community-acquired infectious diarrhoea in children under 5 years of age in Dakar, Senegal, Paediatr Int Child Health 2013 Aug;33(3):139-44.
• 2013
  , Meningococcal carriage in the African meningitis belt., Trop Med Int Health 2013 Aug; 18(8): 968-78.
• 2013
  Baucheron S, Le Hello S, Doublet B, Giraud E, Weill FX, Cloeckaert A, ramR mutations affecting fluoroquinolone susceptibility in epidemic multidrug-resistant Salmonella enterica serovar Kentucky ST198, Front Microbiol 2013;4:213.
• 2013
  Terrade A, Collard JM, Nato F, Taha MK, Laboratory evaluation of a rapid diagnostic test for Neisseria meningitidis serogroup A., Trans R Soc Trop Med Hyg 2013 Jul; 107(7): 460-1.
• 2013
  Rahman MZ, Akter S, Azmuda N, Sultana M, Weill FX, Khan SI, Grimont PA, Birkeland NK, Serological cross-reaction between O-antigens of Shigella dysenteriae type 4 and an environmental Escherichia albertii isolate, Curr. Microbiol. 2013 Nov;67(5):590-5.
• 2013
  Le Hello S, Harrois D, Bouchrif B, Sontag L, Elhani D, Guibert V, Zerouali K, Weill FX, Highly drug-resistant Salmonella enterica serotype Kentucky ST198-X1: a microbiological study, Lancet Infect Dis 2013 Aug;13(8):672-9.
• 2013
  Argemi X, Hansmann Y, Christmann D, Lefebvre S, Jaulhac B, Jehl F, In vitro activity of daptomycin against Enterococcus faecalis under various conditions of growth-phases, inoculum and pH, PLoS ONE 2013;8(5):e64218.
• 2013
  Jusot JF, Tohon Z, Yazi AA, Collard JM, Significant sequelae after bacterial meningitis in Niger: a cohort study., BMC Infect Dis 2013 May; 13(): 228.
• 2013
  Altmann D, Aseffa A, Bash M, Basta N, Borrow R, Broome C, Caugant D, Clark T, Collard JM, Djingarey M, Goldblatt D, Greenwood B, Griffiths U, Hajjeh R, Hassan-King M, Hugonnet S, Kimball AM, LaForce M, MacLennan C, Maiden MC, Manigart O, Mayer L, Messonnier N, Moisi J, Moore K, Moto DD, Mueller J, Nascimento M, Obaro S, Ouedraogo R, Page AL, Perea W, Pluschke G, Preziosi MP, Sow S, Stephens D, Stuart J, Thomson M, Tiendrebeogo S, Trape JF, Vernet G, Priorities for research on meningococcal disease and the impact of serogroup A vaccination in the African meningitis belt., Vaccine 2013 Mar; 31(11): 1453-7.
• 2013
  Lindstedt BA, Torpdahl M, Vergnaud G, Le Hello S, Weill FX, Tietze E, Malorny B, Prendergast DM, Ní Ghallchoir E, Lista RF, Schouls LM, Söderlund R, Börjesson S, Åkerström S, Use of multilocus variable-number tandem repeat analysis (MLVA) in eight European countries, 2012, Euro Surveill. 2013 Jan;18(4):20385.
• 2013
  Grad YH, Godfrey P, Cerquiera GC, Mariani-Kurkdjian P, Gouali M, Bingen E, Shea TP, Haas BJ, Griggs A, Young S, Zeng Q, Lipsitch M, Waldor MK, Weill FX, Wortman JR, Hanage WP, Comparative genomics of recent Shiga toxin-producing Escherichia coli O104:H4: short-term evolution of an emerging pathogen, MBio 2013;4(1):e00452-12.
• 2013
  Gouali M, Ruckly C, Carle I, Lejay-Collin M, Weill FX, Evaluation of CHROMagar STEC and STEC O104 chromogenic agar media for detection of Shiga Toxin-producing Escherichia coli in stool specimens, J. Clin. Microbiol. 2013 Mar;51(3):894-900.
• 2013
  Basta NE, Stuart JM, Nascimento MC, Manigart O, Trotter C, Hassan-King M, Chandramohan D, Sow SO, Berthe A, Bedru A, Tekletsion YK, Collard JM, Jusot JF, Diallo A, Basséne H, Daugla DM, Gamougam K, Hodgson A, Forgor AA, Omotara BA, Gadzama GB, Watkins ER, Rebbetts LS, Diallo K, Weiss NS, Halloran ME, Maiden MC, Greenwood B, Methods for identifying Neisseria meningitidis carriers: a multi-center study in the African meningitis belt., PLoS One 2013 ; 8(10): e78336.
• 2013
  Collard JM, Alio Sanda AK, Jusot JF, Determination of pneumococcal serotypes in meningitis cases in Niger, 2003-2011., PLoS One 2013 ; 8(3): e60432.
• 2012
  Grad YH, Lipsitch M, Griggs AD, Haas BJ, Shea TP, McCowan C, Montmayeur A, FitzGerald M, Wortman JR, Krogfelt KA, Bingen E, Weill FX, Tietze E, Flieger A, Lander ES, Nusbaum C, Birren BW, Hung DT, Hanage WP, Reply to Guy et al.: Support for a bottleneck in the 2011 Escherichia coli O104:H4 outbreak in Germany, Proc. Natl. Acad. Sci. U.S.A. 2012 Dec;109(52):E3629-30.
• 2012
  Heraud JM, Njouom R, Rousset D, Kadjo H, Caro V, Ndiaye MN, Victoir K, Collard JM, Orelle A, Yekwa EL, Ekaza E, Razanajatovo NH, Adamou L, Biscornet L, Enouf V, van der Werf S, Diop OM, Spatiotemporal circulation of influenza viruses in 5 African countries during 2008-2009: a collaborative study of the Institut Pasteur International Network., J Infect Dis 2012 Dec; 206 Suppl 1(Suppl 1): S5-13.
• 2012
  Gouali M, Weill FX, [Enterohemorragic Escherichia coli (EHEC): topical enterobacteriaceae], Presse Med 2013 Jan;42(1):68-75.
• 2012
  Sangal V, Holt KE, Yuan J, Brown DJ, Filliol-Toutain I, Weill FX, Kim DW, da Silveira WD, Pickard D, Thomson NR, Parkhill J, Yu J, Global phylogeny of Shigella sonnei strains from limited single nucleotide polymorphisms (SNPs) and development of a rapid and cost-effective SNP-typing scheme for strain identification by high-resolution melting analysis, J. Clin. Microbiol. 2013 Jan;51(1):303-5.
• 2012
  Haase JK, Brown DJ, Weill FX, Mather H, Foster G, Brisse S, Wain J, Achtman M, Population genetic structure of 4,12:a:- Salmonella enterica strains from harbor porpoises, Appl. Environ. Microbiol. 2012 Dec;78(24):8829-33.
• 2012
  Raguenaud ME, Le Hello S, Salah S, Weill FX, Brisabois A, Delmas G, Germonneau P, Epidemiological and microbiological investigation of a large outbreak of monophasic Salmonella Typhimurium 4,5,12:i:- in schools associated with imported beef in Poitiers, France, October 2010, Euro Surveill. 2012 Oct;17(40):20289.
• 2012
  Kermas R, Touati A, Brasme L, Le Magrex-Debar E, Mehrane S, Weill FX, De Champs C, Characterization of extended-spectrum beta-lactamase-producing Salmonella enterica serotype Brunei and Heidelberg at the Hussein Dey hospital in Algiers (Algeria), Foodborne Pathog. Dis. 2012 Sep;9(9):803-8.
• 2012
  Holt KE, Baker S, Weill FX, Holmes EC, Kitchen A, Yu J, Sangal V, Brown DJ, Coia JE, Kim DW, Choi SY, Kim SH, da Silveira WD, Pickard DJ, Farrar JJ, Parkhill J, Dougan G, Thomson NR, Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe, Nat. Genet. 2012 Sep;44(9):1056-9.
• 2012
  Saleh M, Lefèvre S, Acar N, Bourcier T, Marcellin L, Prévost G, Subilia A, Gaucher D, Jehl F, Efficacy of intravitreal administrations of linezolid in an experimental model of S. aureus-related endophthalmitis, Invest. Ophthalmol. Vis. Sci. 2012 Jul;53(8):4832-41.
• 2012
  Le Hello S, Weill FX, Guibert V, Praud K, Cloeckaert A, Doublet B, Early strains of multidrug-resistant Salmonella enterica serovar Kentucky sequence type 198 from Southeast Asia harbor Salmonella genomic island 1-J variants with a novel insertion sequence, Antimicrob. Agents Chemother. 2012 Oct;56(10):5096-102.
• 2012
  Achtman M, Wain J, Weill FX, Nair S, Zhou Z, Sangal V, Krauland MG, Hale JL, Harbottle H, Uesbeck A, Dougan G, Harrison LH, Brisse S,, Multilocus sequence typing as a replacement for serotyping in Salmonella enterica, PLoS Pathog. 2012;8(6):e1002776.
• 2012
  Traoré SG, Bonfoh B, Krabi R, Odermatt P, Utzinger J, Rose KN, Tanner M, Frey J, Quilici ML, Koussémon M, Risk of Vibrio transmission linked to the consumption of crustaceans in coastal towns of Côte d’Ivoire, J. Food Prot. 2012 Jun;75(6):1004-11.
• 2012
  Page AL, Alberti KP, Mondonge V, Rauzier J, Quilici ML, Guerin PJ, Evaluation of a rapid test for the diagnosis of cholera in the absence of a gold standard, PLoS ONE 2012;7(5):e37360.
• 2012
  Fabre L, Zhang J, Guigon G, Le Hello S, Guibert V, Accou-Demartin M, de Romans S, Lim C, Roux C, Passet V, Diancourt L, Guibourdenche M, Issenhuth-Jeanjean S, Achtman M, Brisse S, Sola C, Weill FX, CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections, PLoS ONE 2012;7(5):e36995.
• 2012
  Rosec JP, Causse V, Cruz B, Rauzier J, Carnat L, The international standard ISO/TS 21872-1 to study the occurence of total and pathogenic Vibrio parahaemolyticus and Vibrio cholerae in seafood: ITS improvement by use of a chromogenic medium and PCR, Int. J. Food Microbiol. 2012 Jul;157(2):189-94.
• 2012
  Haus-Cheymol R, Theodose R, Quilici ML, Chevallier G, Liautaud B, Ktari F, Garcia J, de Laval F, Migliani R, A cluster of acute diarrhea suspected to be cholera in French travelers in Haiti, December 2010, J Travel Med 2012 May-Jun;19(3):189-91.
• 2012
  Boumart Z, Roche SM, Lalande F, Virlogeux-Payant I, Hennequet-Antier C, Menanteau P, Gabriel I, Weill FX, Velge P, Chemaly M, Heterogeneity of persistence of Salmonella enterica serotype Senftenberg strains could explain the emergence of this serotype in poultry flocks, PLoS ONE 2012;7(4):e35782.
• 2012
  Vanhoof R, Gillis P, Stévart O, Boland C, Vandenberg O, Fux F, Collard JM, Bertrand S, Transmission of multiple resistant Salmonella Concord from internationally adopted children to their adoptive families and social environment: proposition of guidelines., Eur J Clin Microbiol Infect Dis 2012 Apr; 31(4): 491-7.
• 2012
  King LA, Nogareda F, Weill FX, Mariani-Kurkdjian P, Loukiadis E, Gault G, Jourdan-DaSilva N, Bingen E, Macé M, Thevenot D, Ong N, Castor C, Noël H, Van Cauteren D, Charron M, Vaillant V, Aldabe B, Goulet V, Delmas G, Couturier E, Le Strat Y, Combe C, Delmas Y, Terrier F, Vendrely B, Rolland P, de Valk H, Outbreak of Shiga toxin-producing Escherichia coli O104:H4 associated with organic fenugreek sprouts, France, June 2011, Clin. Infect. Dis. 2012 Jun;54(11):1588-94.
• 2012
  Jusot JF, Adamou L, Collard JM, Influenza transmission during a one-year period (2009-2010) in a Sahelian city: low temperature plays a major role., Influenza Other Respir Viruses 2012 Mar; 6(2): 87-9.
• 2012
  Lefèvre S, Saleh M, Marcellin L, Subilia A, Bourcier T, Prévost G, Jehl F, Daptomycin versus vancomycin in a methicillin-resistant Staphylococcus aureus endophthalmitis rabbit model: bactericidal effect, safety, and ocular pharmacokinetics, Antimicrob. Agents Chemother. 2012 May;56(5):2485-92.
• 2012
  Grad YH, Lipsitch M, Feldgarden M, Arachchi HM, Cerqueira GC, Fitzgerald M, Godfrey P, Haas BJ, Murphy CI, Russ C, Sykes S, Walker BJ, Wortman JR, Young S, Zeng Q, Abouelleil A, Bochicchio J, Chauvin S, Desmet T, Gujja S, McCowan C, Montmayeur A, Steelman S, Frimodt-Møller J, Petersen AM, Struve C, Krogfelt KA, Bingen E, Weill FX, Lander ES, Nusbaum C, Birren BW, Hung DT, Hanage WP, Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011, Proc. Natl. Acad. Sci. U.S.A. 2012 Feb;109(8):3065-70.
• 2012
  Gossner CM, van Cauteren D, Le Hello S, Weill FX, Terrien E, Tessier S, Janin C, Brisabois A, Dusch V, Vaillant V, Jourdan-da Silva N, Nationwide outbreak of Salmonella enterica serotype 4,[5],12:i:- infection associated with consumption of dried pork sausage, France, November to December 2011, Euro Surveill. 2012 Feb;17(5).
• 2012
  Hendriksen RS, Le Hello S, Bortolaia V, Pulsrikarn C, Nielsen EM, Pornruangmong S, Chaichana P, Svendsen CA, Weill FX, Aarestrup FM, Characterization of isolates of Salmonella enterica serovar Stanley, a serovar endemic to Asia and associated with travel, J. Clin. Microbiol. 2012 Mar;50(3):709-20.
• 2012
  Le Hello S, Brisabois A, Accou-Demartin M, Josse A, Marault M, Francart S, Da Silva NJ, Weill FX, Foodborne outbreak and nonmotile Salmonella enterica variant, France, Emerging Infect. Dis. 2012 Jan;18(1):132-4.
• 2012
  Copin S, Robert-Pillot A, Malle P, Quilici ML, Gay M, Evaluation of most-probable-number-PCR method with internal amplification control for the counting of total and pathogenic Vibrio parahaemolyticus in frozen shrimps, J. Food Prot. 2012 Jan;75(1):150-3.
• 2012
  Paireau J, Girond F, Collard JM, Maïnassara HB, Jusot JF, Analysing spatio-temporal clustering of meningococcal meningitis outbreaks in Niger reveals opportunities for improved disease control., PLoS Negl Trop Dis 2012 ; 6(3): e1577.
• 2011
  Collard JM, Maman Z, Abani A, Mainasara HB, Djibo S, Yacouba H, Maitournam R, Sidikou F, Nicolas P, Rocourt J, Jusot JF, Microbiological and epidemiological investigation of the Neisseria meningitidis serogroup A epidemic in Niger in 2009: last wave before the introduction of the serogroup A meningococcal conjugate vaccine?, Epidemiol Infect 2011 Nov; 139(11): 1656-60.
• 2011
  Monecke S, Mariani-Kurkdjian P, Bingen E, Weill FX, Balière C, Slickers P, Ehricht R, Presence of enterohemorrhagic Escherichia coli ST678/O104:H4 in France prior to 2011, Appl. Environ. Microbiol. 2011 Dec;77(24):8784-6.
• 2011
  Mariani-Kurkdjian P, Bingen E, Gault G, Jourdan-Da Silva N, Weill FX, Escherichia coli O104:H4 south-west France, June 2011, Lancet Infect Dis 2011 Oct;11(10):732-3.
• 2011
  Le Hello S, Hendriksen RS, Doublet B, Fisher I, Nielsen EM, Whichard JM, Bouchrif B, Fashae K, Granier SA, Jourdan-Da Silva N, Cloeckaert A, Threlfall EJ, Angulo FJ, Aarestrup FM, Wain J, Weill FX, International spread of an epidemic population of Salmonella enterica serotype Kentucky ST198 resistant to ciprofloxacin, J. Infect. Dis. 2011 Sep;204(5):675-84.
• 2011
  Holt KE, Phan MD, Baker S, Duy PT, Nga TV, Nair S, Turner AK, Walsh C, Fanning S, Farrell-Ward S, Dutta S, Kariuki S, Weill FX, Parkhill J, Dougan G, Wain J, Emergence of a globally dominant IncHI1 plasmid type associated with multiple drug resistant typhoid, PLoS Negl Trop Dis 2011 Jul;5(7):e1245.
• 2011
  Bertrand S, Van Meervenne E, De Baere T, Vanhoof R, Collard JM, Ruckly C, Taha M, Carion F, Detection of a geographical and endemic cluster of hyper-invasive meningococcal strains., Microbes Infect 2011 Jul; 13(7): 684-90.
• 2011
  Bugarel M, Granier SA, Weill FX, Fach P, Brisabois A, A multiplex real-time PCR assay targeting virulence and resistance genes in Salmonella enterica serotype Typhimurium, BMC Microbiol. 2011;11:151.
• 2011
  Page AL, Alberti KP, Guénolé A, Mondongue V, Lonlas Mayele S, Guerin PJ, Quilici ML, Use of filter paper as a transport medium for laboratory diagnosis of cholera under field conditions, J. Clin. Microbiol. 2011 Aug;49(8):3021-3.
• 2011
  Accou-Demartin M, Gaborieau V, Song Y, Roumagnac P, Marchou B, Achtman M, Weill FX, Salmonella enterica Serotype Typhi with nonclassical quinolone resistance phenotype, Emerging Infect. Dis. 2011 Jun;17(6):1091-4.
• 2011
  Saleh M, Lefevre S, Bourcier T, Prevost G, Gaucher D, Speeg-Schatz C, Jehl F, Ocular penetration of linezolid after oral administration in rabbits, J Ocul Pharmacol Ther 2011 Jun;27(3):243-6.
• 2011
  Lefevre S, Ruimy D, Jehl F, Neuville A, Robert P, Sordet C, Ehlinger M, Dietemann JL, Bierry G, Septic arthritis: monitoring with USPIO-enhanced macrophage MR imaging, Radiology 2011 Mar;258(3):722-8.
• 2011
  Pardos de la Gándara M, Seral C, Castillo García J, Rubio Calvo C, Weill FX, Prevalence and characterization of extended-spectrum beta-lactamases-producing Salmonella enterica isolates in Saragossa, Spain (2001-2008), Microb. Drug Resist. 2011 Jun;17(2):207-13.
• 2011
  Cazorla C, Guigon A, Noel M, Quilici ML, Lacassin F, Fatal Vibrio vulnificus infection associated with eating raw oysters, New Caledonia, Emerging Infect. Dis. 2011 Jan;17(1):136-7.
• 2010
  Weill FX, [Typhoid fever: facing the challenge of resistant strains], Med Sci (Paris) 2010 Nov;26(11):969-75.
• 2010
  Quilici ML, Massenet D, Gake B, Bwalki B, Olson DM, Vibrio cholerae O1 variant with reduced susceptibility to ciprofloxacin, Western Africa, Emerging Infect. Dis. 2010 Nov;16(11):1804-5.
• 2010
  Sangal V, Harbottle H, Mazzoni CJ, Helmuth R, Guerra B, Didelot X, Paglietti B, Rabsch W, Brisse S, Weill FX, Roumagnac P, Achtman M, Evolution and population structure of Salmonella enterica serovar Newport, J. Bacteriol. 2010 Dec;192(24):6465-76.
• 2010
  Collard JM, Maman Z, Yacouba H, Djibo S, Nicolas P, Jusot JF, Rocourt J, Maitournam R, Increase in Neisseria meningitidis serogroup W135, Niger, 2010., Emerg Infect Dis 2010 Sep; 16(9): 1496-8.
• 2010
  Robert-Pillot A, Copin S, Gay M, Malle P, Quilici ML, Total and pathogenic Vibrio parahaemolyticus in shrimp: fast and reliable quantification by real-time PCR, Int. J. Food Microbiol. 2010 Oct;143(3):190-7.
• 2010
  Pignato S, Coniglio MA, Faro G, Lefevre M, Weill FX, Giammanco G, Molecular epidemiology of ampicillin resistance in Salmonella spp. and Escherichia coli from wastewater and clinical specimens, Foodborne Pathog. Dis. 2010 Aug;7(8):945-51.
• 2010
  Petsaris O, Nousbaum JB, Quilici ML, Le Coadou G, Payan C, Abalain ML, Non-O1, non-O139 Vibrio cholerae bacteraemia in a cirrhotic patient, J. Med. Microbiol. 2010 Oct;59(Pt 10):1260-2.
• 2010
  Bone A, Noel H, Le Hello S, Pihier N, Danan C, Raguenaud ME, Salah S, Bellali H, Vaillant V, Weill FX, Jourdan-da Silva N, Nationwide outbreak of Salmonella enterica serotype 4,12:i:- infections in France, linked to dried pork sausage, March-May 2010, Euro Surveill. 2010 Jun;15(24).
• 2010
  Bierry G, Jehl F, Neuville A, Lefevre S, Robert P, Kremer S, Dietemann JL, MRI of macrophages in infectious knee synovitis, AJR Am J Roentgenol 2010 Jun;194(6):W521-6.
• 2010
  Vandenberg O, Nyarukweba DZ, Ndeba PM, Hendriksen RS, Barzilay EJ, Schirvel C, Bisimwa BB, Collard JM, Aidara Kane A, Aarestrup FM, Microbiologic and clinical features of Salmonella species isolated from bacteremic children in eastern Democratic Republic of Congo., Pediatr Infect Dis J 2010 Jun; 29(6): 504-10.
• 2010
  Song Y, Roumagnac P, Weill FX, Wain J, Dolecek C, Mazzoni CJ, Holt KE, Achtman M, A multiplex single nucleotide polymorphism typing assay for detecting mutations that result in decreased fluoroquinolone susceptibility in Salmonella enterica serovars Typhi and Paratyphi A, J. Antimicrob. Chemother. 2010 Aug;65(8):1631-41.
• 2010
  Lefèvre S, Cocquerelle V, Riegel P, Scheftel JM, Jaulhac B, Jehl F, [Comparative study of Vitek-2™ AIX versus Vitek-2™ PC: phenotypic resistance of enterobacteriaceae to β-lactams], Pathol. Biol. 2012 Apr;60(2):78-83.
• 2010
  Vezzulli L, Previati M, Pruzzo C, Marchese A, Bourne DG, Cerrano C,, Vibrio infections triggering mass mortality events in a warming Mediterranean Sea, Environ. Microbiol. 2010 Jul;12(7):2007-19.
• 2010
  Saleh M, Jehl F, Dory A, Lefevre S, Prevost G, Gaucher D, Sauer A, Speeg-Schatz C, Bourcier T, Ocular penetration of topically applied linezolid in a rabbit model, J Cataract Refract Surg 2010 Mar;36(3):488-92.
• 2010
  Bertrand S, Dierick K, Heylen K, De Baere T, Pochet B, Robesyn E, Lokietek S, Van Meervenne E, Imberechts H, De Zutter L, Collard JM, Lessons learned from the management of a national outbreak of Salmonella ohio linked to pork meat processing and distribution., J Food Prot 2010 Mar; 73(3): 529-34.
• 2010
  Yde M, Botteldoorn N, Bertrand S, Collard J, Dierick K, Microbiological and molecular investigation of an increase of human listeriosis in Belgium, 2006-2007., Euro Surveill 2010 Feb; 15(6): .
• 2009
  Doublet B, Robin F, Casin I, Fabre L, Le Fleche A, Bonnet R, Weill FX, Molecular and biochemical characterization of the natural chromosome-encoded class A beta-lactamase from Pseudomonas luteola, Antimicrob. Agents Chemother. 2010 Jan;54(1):45-51.
• 2009
  Weill FX, Le Hello S, Clerc M, Scribans C, de Barbeyrac B, Serological reactivity and bacterial genotypes in Chlamydia trachomatis urogenital infections in Guadeloupe, French West Indies, Sex Transm Infect 2010 Apr;86(2):101-5.
• 2009
  Guibourdenche M, Roggentin P, Mikoleit M, Fields PI, Bockemühl J, Grimont PA, Weill FX, Supplement 2003-2007 (No. 47) to the White-Kauffmann-Le Minor scheme, Res. Microbiol. 2010 Jan-Feb;161(1):26-9.
• 2009
  Bouchrif B, Le Hello S, Pardos M, Karraouan B, Perrier-Gros-Claude JD, Ennaji MM, Timinouni M, Weill FX, Ceftazidime-resistant Salmonella enterica, Morocco, Emerging Infect. Dis. 2009 Oct;15(10):1693-5.
• 2009
  Hendriksen RS, Mikoleit M, Carlson VP, Karlsmose S, Vieira AR, Jensen AB, Seyfarth AM, DeLong SM, Weill FX, Lo Fo Wong DM, Angulo FJ, Wegener HC, Aarestrup FM, WHO Global Salm-Surv external quality assurance system for serotyping of Salmonella isolates from 2000 to 2007, J. Clin. Microbiol. 2009 Sep;47(9):2729-36.
• 2009
  Vezzulli L, Pezzati E, Moreno M, Fabiano M, Pane L, Pruzzo C,, Benthic ecology of Vibrio spp. and pathogenic Vibrio species in a coastal Mediterranean environment (La Spezia Gulf, Italy), Microb. Ecol. 2009 Nov;58(4):808-18.
• 2009
  Fisher IS, Jourdan-Da Silva N, Hächler H, Weill FX, Schmid H, Danan C, Kérouanton A, Lane CR, Dionisi AM, Luzzi I, Human infections due to Salmonella Napoli: a multicountry, emerging enigma recognized by the Enter-net international surveillance network, Foodborne Pathog. Dis. 2009 Jun;6(5):613-9.
• 2009
  Vrints M, Mairiaux E, Van Meervenne E, Collard JM, Bertrand S, Surveillance of antibiotic susceptibility patterns among Shigella sonnei strains isolated in Belgium during the 18-year period 1990 to 2007., J Clin Microbiol 2009 May; 47(5): 1379-85.
• 2009
  Fabre L, Delauné A, Espié E, Nygard K, Pardos de la Gandara M, Polomack L, Guesnier F, Galimand M, Lassen J, Weill FX, Chromosomal integration of the extended-spectrum beta-lactamase gene blaCTX-M-15 in Salmonella enterica serotype Concord isolates from internationally adopted children, Antimicrob. Agents Chemother. 2009 05;53(5):1808-16.
• 2009
  Doublet B, Granier SA, Robin F, Bonnet R, Fabre L, Brisabois A, Cloeckaert A, Weill FX, Novel plasmid-encoded ceftazidime-hydrolyzing CTX-M-53 extended-spectrum beta-lactamase from Salmonella enterica serotypes Westhampton and Senftenberg, Antimicrob. Agents Chemother. 2009 May;53(5):1944-51.
• 2009
  Lizárraga-Partida ML, Quilici ML, Molecular analyses of Vibrio cholerae O1 clinical strains, including new nontoxigenic variants isolated in Mexico during the Cholera epidemic years between 1991 and 2000, J. Clin. Microbiol. 2009 May;47(5):1364-71.
• 2009
  Dominguez M, Jourdan-Da Silva N, Vaillant V, Pihier N, Kermin C, Weill FX, Delmas G, Kerouanton A, Brisabois A, de Valk H, Outbreak of Salmonella enterica serotype Montevideo infections in France linked to consumption of cheese made from raw milk, Foodborne Pathog. Dis. 2009 Jan-Feb;6(1):121-8.
• 2009
  Ngandjio A, Tejiokem M, Wouafo M, Ndome I, Yonga M, Guenole A, Lemee L, Quilici ML, Fonkoua MC, Antimicrobial resistance and molecular characterization of Vibrio cholerae O1 during the 2004 and 2005 outbreak of cholera in Cameroon, Foodborne Pathog. Dis. 2009 Jan-Feb;6(1):49-56.
• 2008
  Doublet B, Praud K, Weill FX, Cloeckaert A, Association of IS26-composite transposons and complex In4-type integrons generates novel multidrug resistance loci in Salmonella genomic island 1, J. Antimicrob. Chemother. 2009 Feb;63(2):282-9.
• 2008
  Hendriksen RS, Seyfarth AM, Jensen AB, Whichard J, Karlsmose S, Joyce K, Mikoleit M, Delong SM, Weill FX, Aidara-Kane A, Lo Fo Wong DM, Angulo FJ, Wegener HC, Aarestrup FM, Results of use of WHO Global Salm-Surv external quality assurance system for antimicrobial susceptibility testing of Salmonella isolates from 2000 to 2007, J. Clin. Microbiol. 2009 Jan;47(1):79-85.
• 2008
  Grandesso F, Jourdan-da Silva N, Le Hello S, Roussel S, Rasson S, Rousseau C, Wyndels K, Robemanpianina I, Bourdeau I, Peyron C, Gehin R, Moyano M, Vogeleisen C, Excess of infections due to a multi-drug sensitive Salmonella enterica serotype Typhimurium in France in June 2008, Euro Surveill. 2008 Oct;13(44):pii: 19022.
• 2008
  Jourdan N, Le Hello S, Delmas G, Clouzeau J, Manteau C, Desaubliaux B, Chagnon V, Thierry-Bled F, Demare N, Weill F, de Valk H, Nationwide outbreak of Salmonella enterica serotype gives infections in infants in France, linked to infant milk formula, September 2008, Euro Surveill. 2008 Sep;13(39).
• 2008
  Doublet B, Praud K, Bertrand S, Collard JM, Weill FX, Cloeckaert A, Novel insertion sequence- and transposon-mediated genetic rearrangements in genomic island SGI1 of Salmonella enterica serovar Kentucky., Antimicrob Agents Chemother 2008 Oct; 52(10): 3745-54.
• 2008
  Boumghar-Bourtchai L, Mariani-Kurkdjian P, Bingen E, Filliol I, Dhalluin A, Ifrane SA, Weill FX, Leclercq R, Macrolide-resistant Shigella sonnei, Emerging Infect. Dis. 2008 Aug;14(8):1297-9.
• 2008
  Holt KE, Parkhill J, Mazzoni CJ, Roumagnac P, Weill FX, Goodhead I, Rance R, Baker S, Maskell DJ, Wain J, Dolecek C, Achtman M, Dougan G, High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi, Nat. Genet. 2008 Aug;40(8):987-93.
• 2008
  Tarantola A, Vaucel J, Laviolle C, Quilici ML, Thiolet JM, Fournier JM,, A cluster of Vibrio cholerae O1 infections in French travelers to Rajasthan (India), May 2006, J Travel Med 2008 Jul-Aug;15(4):273-7.
• 2008
  Egorova S, Timinouni M, Demartin M, Granier SA, Whichard JM, Sangal V, Fabre L, Delauné A, Pardos M, Millemann Y, Espié E, Achtman M, Grimont PA, Weill FX, , Ceftriaxone-resistant salmonella enterica serotype Newport, France., Emerging Infect. Dis. 2008 Jun; 14(6): 954-7.
• 2008
  Collard JM, Bertrand S, Dierick K, Godard C, Wildemauwe C, Vermeersch K, Duculot J, Van Immerseel F, Pasmans F, Imberechts H, Quinet C, Drastic decrease of Salmonella Enteritidis isolated from humans in Belgium in 2005, shift in phage types and influence on foodborne outbreaks., Epidemiol Infect 2008 Jun; 136(6): 771-81.
• 2008
  Touati A, Benallaoua S, Gharout A, Amar AA, Le Magrex Debar E, Brasme L, Madoux J, De Champs C, Weill FX, First report of CTX-M-15 in Salmonella enterica serotype Kedougou recovered from an Algerian hospital, Pediatr. Infect. Dis. J. 2008 May;27(5):479-80.
• 2008
  Baker S, Holt K, van de Vosse E, Roumagnac P, Whitehead S, King E, Ewels P, Keniry A, Weill FX, Lightfoot D, van Dissel JT, Sanderson KE, Farrar J, Achtman M, Deloukas P, Dougan G, High-throughput genotyping of Salmonella enterica serovar Typhi allowing geographical assignment of haplotypes and pathotypes within an urban District of Jakarta, Indonesia, J. Clin. Microbiol. 2008 May;46(5):1741-6.
• 2008
  Meakins S, Fisher IS, Berghold C, Gerner-Smidt P, Tschäpe H, Cormican M, Luzzi I, Schneider F, Wannett W, Coia J, Echeita A, Threlfall EJ, Antimicrobial drug resistance in human nontyphoidal Salmonella isolates in Europe 2000-2004: a report from the Enter-net International Surveillance Network., Microb Drug Resist 2008 Mar; 14(1): 31-5.
• 2007
  Yu CY, Chou SJ, Yeh CM, Chao MR, Huang KC, Chang YF, Chiou CS, Weill FX, Chiu CH, Chu CH, Chu C, Prevalence and characterization of multidrug-resistant (type ACSSuT) Salmonella enterica serovar Typhimurium strains in isolates from four gosling farms and a hatchery farm, J. Clin. Microbiol. 2008 Feb;46(2):522-6.
• 2007
  Vrints M, Bertrand S, Collard JM, A bacterial population study of commercialized wastewater inoculants., J Appl Microbiol 2007 Nov; 103(5): 2006-15.
• 2007
  Le TA, Fabre L, Roumagnac P, Grimont PA, Scavizzi MR, Weill FX, Clonal expansion and microevolution of quinolone-resistant Salmonella enterica serotype typhi in Vietnam from 1996 to 2004, J. Clin. Microbiol. 2007 Nov;45(11):3485-92.
• 2007
  García Fernández A, Cloeckaert A, Bertini A, Praud K, Doublet B, Weill FX, Carattoli A, Comparative analysis of IncHI2 plasmids carrying blaCTX-M-2 or blaCTX-M-9 from Escherichia coli and Salmonella enterica strains isolated from poultry and humans, Antimicrob. Agents Chemother. 2007 Nov;51(11):4177-80.
• 2007
  Tarantola A, Ioos S, Rotureau B, Paquet C, Quilici ML, Fournier JM, Retrospective analysis of the cholera cases imported to France from 1973 to 2005, J Travel Med 2007 Jul-Aug;14(4):209-14.
• 2007
  Weill FX, Tran HH, Roumagnac P, Fabre L, Minh NB, Stavnes TL, Lassen J, Bjune G, Grimont PA, Guerin PJ, Clonal reconquest of antibiotic-susceptible Salmonella enterica serotype Typhi in Son La Province, Vietnam, Am. J. Trop. Med. Hyg. 2007 Jun;76(6):1174-81.
• 2007
  Tarantola A, Quilici ML,, Vibrio cholerae O1 strains with decreased susceptibility to fluoroquinolones in travellers returning from India (Rajasthan) to France, April 2007, Euro Surveill. 2007 May;12(5):E070503.2.
• 2007
  Roumagnac P, Brisse S, Weill FX, [Evolutionary history of Salmonella Typhi illustrates a new pattern of epidemiologic dynamics], Med Sci (Paris) 2007 May;23(5):455-6.
• 2007
  Collard JM, Place S, Denis O, Rodriguez-Villalobos H, Vrints M, Weill FX, Baucheron S, Cloeckaert A, Struelens M, Bertrand S, Travel-acquired salmonellosis due to Salmonella Kentucky resistant to ciprofloxacin, ceftriaxone and co-trimoxazole and associated with treatment failure., J Antimicrob Chemother 2007 Jul; 60(1): 190-2.
• 2007
  Fournier JM, Quilici ML, [Cholera], Presse Med 2007 Apr;36(4 Pt 2):727-39.
• 2007
  Cloeckaert A, Praud K, Doublet B, Bertini A, Carattoli A, Butaye P, Imberechts H, Bertrand S, Collard JM, Arlet G, Weill FX, Dissemination of an extended-spectrum-beta-lactamase blaTEM-52 gene-carrying IncI1 plasmid in various Salmonella enterica serovars isolated from poultry and humans in Belgium and France between 2001 and 2005., Antimicrob Agents Chemother 2007 May; 51(5): 1872-5.
• 2007
  Cattoir V, Weill FX, Poirel L, Fabre L, Soussy CJ, Nordmann P, Prevalence of qnr genes in Salmonella in France, J. Antimicrob. Chemother. 2007 Apr;59(4):751-4.
• 2007
  Brouard C, Espié E, Weill FX, Kérouanton A, Brisabois A, Forgue AM, Vaillant V, de Valk H, Two consecutive large outbreaks of Salmonella enterica serotype Agona infections in infants linked to the consumption of powdered infant formula, Pediatr. Infect. Dis. J. 2007 Feb;26(2):148-52.
• 2007
  Guerin PJ, Grais RF, Rottingen JA, Valleron AJ, Using European travellers as an early alert to detect emerging pathogens in countries with limited laboratory resources., BMC Public Health 2007 Jan; 7(): 8.
• 2007
  Kérouanton A, Marault M, Lailler R, Weill FX, Feurer C, Espié E, Brisabois A, Pulsed-field gel electrophoresis subtyping database for foodborne Salmonella enterica serotype discrimination, Foodborne Pathog. Dis. 2007;4(3):293-303.
• 2007
  Egorova S, Kaftyreva L, Grimont PA, Weill FX, Prevalence and characterization of extended-spectrum cephalosporin-resistant nontyphoidal Salmonella isolates in adults in Saint Petersburg, Russia (2002-2005), Microb. Drug Resist. 2007;13(2):102-7.
• 2007
  Brédart S, Wastelin M, Collard JM, Coppée M, Bodart E, [Pet turtle and septicemia: what is the relationship?]., Rev Med Liege 2007 ; 62(7-8): 496-7.
• 2006
  Roumagnac P, Weill FX, Dolecek C, Baker S, Brisse S, Chinh NT, Le TA, Acosta CJ, Farrar J, Dougan G, Achtman M, Evolutionary history of Salmonella typhi, Science 2006 Nov;314(5803):1301-4.
• 2006
  Weill FX, Bertrand S, Guesnier F, Baucheron S, Cloeckaert A, Grimont PA, Ciprofloxacin-resistant Salmonella Kentucky in travelers, Emerging Infect. Dis. 2006 Oct;12(10):1611-2.
• 2006
  Cloeckaert A, Praud K, Doublet B, Demartin M, Weill FX, Variant Salmonella genomic island 1-L antibiotic resistance gene cluster in Salmonella enterica serovar Newport, Antimicrob. Agents Chemother. 2006 Nov;50(11):3944-6.
• 2006
  Bertrand S, Weill FX, Cloeckaert A, Vrints M, Mairiaux E, Praud K, Dierick K, Wildemauve C, Godard C, Butaye P, Imberechts H, Grimont PA, Collard JM, Clonal emergence of extended-spectrum beta-lactamase (CTX-M-2)-producing Salmonella enterica serovar Virchow isolates with reduced susceptibilities to ciprofloxacin among poultry and humans in Belgium and France (2000 to 2003)., J Clin Microbiol 2006 Aug; 44(8): 2897-903.
• 2006
  Bauwens L, Vercammen F, Bertrand S, Collard JM, De Ceuster S, Isolation of Salmonella from environmental samples collected in the reptile department of Antwerp Zoo using different selective methods., J Appl Microbiol 2006 Aug; 101(2): 284-9.
• 2006
  Chiu CH, Su LH, Chu CH, Wang MH, Yeh CM, Weill FX, Chu C, Detection of multidrug-resistant Salmonella enterica serovar typhimurium phage types DT102, DT104, and U302 by multiplex PCR, J. Clin. Microbiol. 2006 Jul;44(7):2354-8.
• 2006
  , Ajzenman C, Bizet MC, Dufraisse MP, Falip E, Fournier JM, Etchegorry MG, Haeghebaert S, Isnard H, Le Loc'h H, Mansir T, Quilici ML, Raqbi F, Raud E, Roberto Y, Scanvic A, Senellier M, Sirot S, Tarantola A, [Cases of imported cholera in France, summer 2005. A. Tarantola for the incident management teams], Med Mal Infect 2006 Jun;36(6):346-8.
• 2006
  Bercion R, Demartin M, Recio C, Massamba PM, Frank T, Escribà JM, Grimont F, Grimont PA, Weill FX, Molecular epidemiology of multidrug-resistant Shigella dysenteriae type 1 causing dysentery outbreaks in Central African Republic, 2003-2004, Trans. R. Soc. Trop. Med. Hyg. 2006 Dec;100(12):1151-8.
• 2006
  Weill FX, Guesnier F, Guibert V, Timinouni M, Demartin M, Polomack L, Grimont PA, Multidrug resistance in Salmonella enterica serotype Typhimurium from humans in France (1993 to 2003), J. Clin. Microbiol. 2006 Mar;44(3):700-8.
• 2005
  Fevre C, Passet V, Weill FX, Grimont PA, Brisse S, Variants of the Klebsiella pneumoniae OKP chromosomal beta-lactamase are divided into two main groups, OKP-A and OKP-B, Antimicrob. Agents Chemother. 2005 Dec;49(12):5149-52.
• 2005
  Bertrand S, Huys G, Yde M, D'Haene K, Tardy F, Vrints M, Swings J, Collard JM, Detection and characterization of tet(M) in tetracycline-resistant Listeria strains from human and food-processing origins in Belgium and France., J Med Microbiol 2005 Dec; 54(Pt 12): 1151-1156.
• 2005
  Ghafir Y, China B, Korsak N, Dierick K, Collard JM, Godard C, De Zutter L, Daube G, Belgian surveillance plans to assess changes in Salmonella prevalence in meat at different production stages., J Food Prot 2005 Nov; 68(11): 2269-77.
• 2005
  Pasmans F, Martel A, Boyen F, Vandekerchove D, Wybo I, Immerseel FV, Heyndrickx M, Collard JM, Ducatelle R, Haesebrouck F, Characterization of Salmonella isolates from captive lizards., Vet Microbiol 2005 Oct; 110(3-4): 285-91.
• 2005
  Fevre C, Jbel M, Passet V, Weill FX, Grimont PA, Brisse S, Six groups of the OXY beta-Lactamase evolved over millions of years in Klebsiella oxytoca, Antimicrob. Agents Chemother. 2005 Aug;49(8):3453-62.
• 2005
  Weill FX, Fabre L, Grandry B, Grimont PA, Casin I, Multiple-antibiotic resistance in Salmonella enterica serotype Paratyphi B isolates collected in France between 2000 and 2003 is due mainly to strains harboring Salmonella genomic islands 1, 1-B, and 1-C, Antimicrob. Agents Chemother. 2005 Jul;49(7):2793-801.
• 2005
  Quilici ML, Robert-Pillot A, Picart J, Fournier JM, Pandemic Vibrio parahaemolyticus O3:K6 spread, France, Emerging Infect. Dis. 2005 Jul;11(7):1148-9.
• 2005
  Lebrun L, Weill FX, Lafendi L, Houriez F, Casanova F, Gutierrez MC, Ingrand D, Lagrange P, Vincent V, Herrmann JL, Use of the INNO-LiPA-MYCOBACTERIA assay (version 2) for identification of Mycobacterium avium-Mycobacterium intracellulare-Mycobacterium scrofulaceum complex isolates, J. Clin. Microbiol. 2005 Jun;43(6):2567-74.
• 2005
  Helms M, Ethelberg S, Mølbak K, International Salmonella Typhimurium DT104 infections, 1992-2001., Emerg Infect Dis 2005 Jun; 11(6): 859-67.
• 2005
  Espié E, Weill FX, Brouard C, Capek I, Delmas G, Forgues AM, Grimont F, de Valk H, Nationwide outbreak of Salmonella enterica serotype Agona infections in infants in France, linked to infant milk formula, investigations ongoing, Euro Surveill. 2005;10(3):E050310.1.
• 2005
  Bouallègue-Godet O, Ben Salem Y, Fabre L, Demartin M, Grimont PA, Mzoughi R, Weill FX, Nosocomial outbreak caused by Salmonella enterica serotype Livingstone producing CTX-M-27 extended-spectrum beta-lactamase in a neonatal unit in Sousse, Tunisia, J. Clin. Microbiol. 2005 Mar;43(3):1037-44.
• 2005
  Fisher IS, Threlfall EJ, The Enter-net and Salm-gene databases of foodborne bacterial pathogens that cause human infections in Europe and beyond: an international collaboration in surveillance and the development of intervention strategies., Epidemiol Infect 2005 Feb; 133(1): 1-7.
• 2004
  Weill FX, Lailler R, Praud K, Kérouanton A, Fabre L, Brisabois A, Grimont PA, Cloeckaert A, Emergence of extended-spectrum-beta-lactamase (CTX-M-9)-producing multiresistant strains of Salmonella enterica serotype Virchow in poultry and humans in France, J. Clin. Microbiol. 2004 Dec;42(12):5767-73.
• 2004
  Van Immerseel F, Pasmans F, De Buck J, Rychlik I, Hradecka H, Collard JM, Wildemauwe C, Heyndrickx M, Ducatelle R, Haesebrouck F, Cats as a risk for transmission of antimicrobial drug-resistant Salmonella., Emerg Infect Dis 2004 Dec; 10(12): 2169-74.
• 2004
  Fisher IS, International trends in salmonella serotypes 1998-2003–a surveillance report from the Enter-net international surveillance network., Euro Surveill 2004 Nov; 9(11): 45-7.
• 2004
  Fisher IS, Dramatic shift in the epidemiology of Salmonella enterica serotype Enteritidis phage types in western Europe, 1998-2003–results from the Enter-net international salmonella database., Euro Surveill 2004 Nov; 9(11): 43-5.
• 2004
  Doublet B, Weill FX, Fabre L, Chaslus-Dancla E, Cloeckaert A, Variant Salmonella genomic island 1 antibiotic resistance gene cluster containing a novel 3′-N-aminoglycoside acetyltransferase gene cassette, aac(3)-Id, in Salmonella enterica serovar newport, Antimicrob. Agents Chemother. 2004 Oct;48(10):3806-12.
• 2004
  Weill FX, Perrier-Gros-Claude JD, Demartin M, Coignard S, Grimont PA, Characterization of extended-spectrum-beta-lactamase (CTX-M-15)-producing strains of Salmonella enterica isolated in France and Senegal, FEMS Microbiol. Lett. 2004 Sep;238(2):353-8.
• 2004
  Giraud E, Blanc G, Bouju-Albert A, Weill FX, Donnay-Moreno C, Mechanisms of quinolone resistance and clonal relationship among Aeromonas salmonicida strains isolated from reared fish with furunculosis, J. Med. Microbiol. 2004 Sep;53(Pt 9):895-901.
• 2004
  Weill FX, Demartin M, Fabre L, Grimont PA, Extended-spectrum-beta-lactamase (TEM-52)-producing strains of Salmonella enterica of various serotypes isolated in France, J. Clin. Microbiol. 2004 Jul;42(7):3359-62.
• 2004
  Weill FX, Demartin M, Tandé D, Espié E, Rakotoarivony I, Grimont PA, SHV-12-like extended-spectrum-beta-lactamase-producing strains of Salmonella enterica serotypes Babelsberg and Enteritidis isolated in France among infants adopted from Mali, J. Clin. Microbiol. 2004 Jun;42(6):2432-7.
• 2004
  Pasmans F, Van Immerseel F, Hermans K, Heyndrickx M, Collard JM, Ducatelle R, Haesebrouck F, Assessment of virulence of pigeon isolates of Salmonella enterica subsp. enterica serovar typhimurium variant copenhagen for humans., J Clin Microbiol 2004 May; 42(5): 2000-2.
• 2004
  Doublet B, Butaye P, Imberechts H, Collard JM, Chaslus-Dancla E, Cloeckaert A, Salmonella agona harboring genomic island 1-A., Emerg Infect Dis 2004 Apr; 10(4): 756-8.
• 2004
  Robert-Pillot A, Guénolé A, Lesne J, Delesmont R, Fournier JM, Quilici ML, Occurrence of the tdh and trh genes in Vibrio parahaemolyticus isolates from waters and raw shellfish collected in two French coastal areas and from seafood imported into France, Int. J. Food Microbiol. 2004 Mar;91(3):319-25.
• 2004
  Huys G, D'Haene K, Collard JM, Swings J, Prevalence and molecular characterization of tetracycline resistance in Enterococcus isolates from food., Appl Environ Microbiol 2004 Mar; 70(3): 1555-62.
• 2004
  Wybot I, Wildemauwe C, Godard C, Bertrand S, Collard JM, Antimicrobial drug resistance in nontyphoid human Salmonella in Belgium: trends for the period 2000-2002., Acta Clin Belg 2004 ; 59(3): 152-60.
• 2004
  Guillaume G, Ledent V, Moens W, Collard JM, Phylogeny of efflux-mediated tetracycline resistance genes and related proteins revisited., Microb Drug Resist 2004 ; 10(1): 11-26.
• 2004
  Wybo I, Potters D, Plaskie K, Covens L, Collard JM, Lauwers S, Salmonella enterica subspecies houtenae serotype 44:z4, z23:–as a rare cause of meningitis., Acta Clin Belg 2004 ; 59(4): 232-4.
• 2003
  Renault PA, Vargas C, Tachet A, Tattevin P, Najman A, Quilici ML, Fournier JM, [Vibrio vulnificus septicemia transmitted through a wound caused by a crustacea], Presse Med 2003 Jun;32(22):1028-30.
• 2003
  Farmachidi JP, Sobesky R, Boussougant Y, Quilici ML, Coffin B, Septicaemia and liver abscesses secondary to non-O1/non-O139 Vibrio cholerae colitis, Eur J Gastroenterol Hepatol 2003 Jun;15(6):699-700.
• 2002
  van Overbeek LS, Wellington EM, Egan S, Smalla K, Heuer H, Collard JM, Guillaume G, Karagouni AD, Nikolakopoulou TL, van Elsas JD, Prevalence of streptomycin-resistance genes in bacterial populations in European habitats., FEMS Microbiol Ecol 2002 Nov; 42(2): 277-88.
• 2002
  Heuer H, Krögerrecklenfort E, Wellington EM, Egan S, van Elsas JD, van Overbeek L, Collard JM, Guillaume G, Karagouni AD, Nikolakopoulou TL, Smalla K, , Gentamicin resistance genes in environmental bacteria: prevalence and transfer., FEMS Microbiol Ecol 2002 Nov; 42(2): 289-302.
• 2002
  Robert-Pillot A, Baron S, Lesne J, Fournier JM, Quilici ML, Improved specific detection of Vibrio cholerae in environmental water samples by culture on selective medium and colony hybridization assay with an oligonucleotide probe, FEMS Microbiol. Ecol. 2002 Apr;40(1):39-46.
• 2000
  Guardabassi L, Dijkshoorn L, Collard JM, Olsen JE, Dalsgaard A, Distribution and in-vitro transfer of tetracycline resistance determinants in clinical and aquatic Acinetobacter strains., J Med Microbiol 2000 Oct; 49(10): 929-936.
• 2000
  Ninin E, Caroff N, El Kouri D, Espaze E, Richet H, Quilici ML, Fournier JM, Nontoxigenic vibrio Cholerae O1 bacteremia: case report and review, Eur. J. Clin. Microbiol. Infect. Dis. 2000 Jun;19(6):489-91.
• 2000
  Guillaume G, Verbrugge D, Chasseur-Libotte M, Moens W, Collard J, PCR typing of tetracycline resistance determinants (Tet A-E) in Salmonella enterica serotype Hadar and in the microbial community of activated sludges from hospital and urban wastewater treatment facilities in Belgium., FEMS Microbiol Ecol 2000 Apr; 32(1): 77-85.
• 1999
  Doblhoff-Dier O, Bachmayer H, Bennett A, Brunius G, Bürki K, Cantley M, Collins C, Crooy P, Elmqvist A, Frontali-Botti C, Havenaar R, Haymerle H, Lelieveld H, Lex M, Mahler JL, Martinez L, Mosgaard C, Olsen L, Pazlarova J, Rudan F, Sarvas M, Stepankova H, Tzotzos G, Wagner K, Werner R, Safe biotechnology 9: values in risk assessment for the environmental application of microorganisms. The Safety in Biotechnology Working Party of the European Federation of Biotechnology., Trends Biotechnol 1999 Aug; 17(8): 307-11.
• 1999
  Duval P, Champetier de Ribes G, Ranjalahy J, Quilici ML, Fournier JM, Cholera in Madagascar, Lancet 1999 Jun;353(9169):2068.
• 1998
  Germani Y, Quilici ML, Glaziou P, Mattera D, Morvan J, Fournier JM, Emergence of cholera in the Central African Republic, Eur. J. Clin. Microbiol. Infect. Dis. 1998 Dec;17(12):888-90.
• 1997
  Lelieveld HL, Bachmayer H, Boon B, Bennett A, Brunius G, Bürki K, Cantley M, Collard JM, Collins CH, Crooy P, Doblhoff-Dier O, Dubakiene R, Economidis I, Elmqvist A, Frontali-Botti C, Havenaar R, Haymerle H, Käppeli O, Leaver G, Lex M, Lund S, Mahler JL, Marris R, Martinez LJ, Zhilevicha A, Safe biotechnology. 8. Transport of infectious and biological materials. Working Party “Safety in Biotechnology” of the European Federation of Biotechnology., Appl Microbiol Biotechnol 1997 Aug; 48(2): 135-40.
• 1994
  Collard JM, Corbisier P, Diels L, Dong Q, Jeanthon C, Mergeay M, Taghavi S, van der Lelie D, Wilmotte A, Wuertz S, Plasmids for heavy metal resistance in Alcaligenes eutrophus CH34: mechanisms and applications., FEMS Microbiol Rev 1994 Aug; 14(4): 405-14.
• 1993
  Dijkmans R, Jagers A, Kreps S, Collard JM, Mergeay M, Rapid method for purification of soil DNA for hybridization and PCR analysis., Microb Releases 1993 Jun; 2(1): 29-34.
• 1993
  Collard JM, Provoost A, Taghavi S, Mergeay M, A new type of Alcaligenes eutrophus CH34 zinc resistance generated by mutations affecting regulation of the cnr cobalt-nickel resistance system., J Bacteriol 1993 Feb; 175(3): 779-84.
• 1990
  Collard JM, Matagne RF, Isolation and genetic analysis of Chlamydomonas reinhardtii strains resistant to cadmium., Appl Environ Microbiol 1990 Jul; 56(7): 2051-5.