Timeline

Jean-Yves Coppee
Permanent Researcher
12 Jan 2021
project

Insights into amebiasis using a human 3D-intestinal model (ANR-14-IFEC-0001-02)

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08 Jan 2021
project

Understanding the Pathogenicity of Entamoeba Using Comparative Transcriptomics and Phylogenomics – GENAMIBE. Project-ANR-10-GENM-0011

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02 Dec 2020
publication

4-Methylcytosine DNA modification is critical for global epigenetic regulation and virulence in the human pathogen Leptospira interrogans.

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19 Nov 2020
publication

Genomic determinants for initiation and length of natural antisense transcripts in Entamoeba histolytica

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09 Oct 2020
publication

Effect of arsenite and growth in biofilm conditions on the evolution of Thiomonas sp. CB2.

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06 Oct 2020
publication

The transcriptional response of pathogenic Leptospira to peroxide reveals new defenses against infection-related oxidative stress.

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01 Aug 2020
publication

Insights into amebiasis using a human 3D-intestinal model.

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09 Jun 2020
publication

Leishmania amazonensis Subverts the Transcription Factor Landscape in Dendritic Cells to Avoid Inflammasome Activation and Stall Maturation

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02 Jun 2020
publication

Human Immune Response Triggered by Entamoeba histolytica in a 3D-Intestinal Model

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14 May 2020
publication

BAHD1 haploinsufficiency results in anxiety-like phenotypes in male mice

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04 May 2020
publication

Intracellular Staphylococcus aureus persisters upon antibiotic exposure

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13 Apr 2020
publication

Transcytosis subversion by M cell-to-enterocyte spread promotes Shigella flexneri and Listeria monocytogenes  intracellular bacterial dissemination

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08 Nov 2019
publication

Mycobacterium abscessus virulence traits unraveled by transcriptomic profiling in amoeba and macrophages

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21 Oct 2019
publication

Non-specific interference of cobalt with siderophore-dependent iron uptake pathways

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15 May 2019
publication

Transcriptional profiling of a laboratory and clinical Mycobacterium tuberculosis strain suggests respiratory poisoning upon exposure to delamanid

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25 Aug 2018
publication

checkMyIndex: a web-based R/Shiny interface for choosing compatible sequencing indexes

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06 Jul 2018
publication

Enzymatic synthesis of random sequences of RNA and RNA analogues by DNA polymerase theta mutants for the generation of aptamer libraries

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13 Jun 2018
publication

Enteric bacteria boost defences against oxidative stress in Entamoeba histolytica

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21 May 2018
publication

Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation

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25 Oct 2017
publication

An ApiAP2 member regulates expression of clonally variant genes of the human malaria parasite Plasmodium falciparum

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19 Oct 2017
news

The PF2 satisfaction survey

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31 Mar 2017
publication

Rae1/YacP, a new endoribonuclease involved in ribosome-dependent mRNA decay in Bacillus subtilis

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01 Mar 2017
project

Deciphering dormancy in Cryptocococcus neoformans

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17 Feb 2017
publication

The Legionella pneumophila genome evolved to accommodate multiple regulatory mechanisms controlled by the CsrA-system

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07 Feb 2017
publication

Comparison of biofilm formation and motility processes in arsenic-resistant Thiomonas spp. strains revealed divergent response to arsenite

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02 Feb 2017
project

Deciphering the virulence factors of Mycobacterium abscessus activated in the presence of environmental amoebae

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31 Jan 2017
project

Transcriptome of different quiescence sub-states of neural stem cells in adult zebrafish

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31 Jan 2017
project

The role of lncRNA H19 in Thymopoiesis

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27 Jan 2017
news

checkMyIndex: a new tool to choose sequencing indexes

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21 Oct 2016
publication

Extensive transcriptome analysis correlates the plasticity of Entamoeba histolytica pathogenesis to rapid phenotype changes depending on the environment

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15 Jun 2016
publication

GH16 and GH81 family β-(1,3)-glucanases in Aspergillus fumigatus are essential for conidial cell wall morphogenesis

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09 Jun 2016
publication

SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data

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18 May 2016
project

Gene expression profiling in germinal center B cells

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18 May 2016
software

SARTools

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26 Apr 2016
event

Training: analysis of the transcriptome by RNAseq

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20 Apr 2016
event

Do not forget the next Citech seminar with Dr Ulf Landegren !

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20 Apr 2016
course

Training: analysis of the transcriptome by RNAseq

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24 Mar 2016
publication

Comparative analysis of viral RNA signatures on different RIG-I-like receptors

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04 Jan 2016
publication

RNase J depletion leads to massive changes in mRNA abundance in Helicobacter pylori.

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20 Oct 2015
publication

Normal and Cystic Fibrosis Human Bronchial Epithelial Cells Infected with Pseudomonas aeruginosa Exhibit Distinct Gene Activation Patterns

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08 Oct 2015
project

Characterization of the SigmaS network by RNA sequencing and identification of SigmaS-controlled small regulatory RNAs in Salmonella

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01 Oct 2015
project

Escherichia coli transcriptomic analysis upon OmrA or OmrB overexpression

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01 Oct 2015
project

Intracellular membrane proliferation in E. coli

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28 Sep 2015
publication

The PfAlba1 RNA-binding protein is an important regulator of translational timing in Plasmodium falciparum blood stages

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24 Sep 2015
news

Single Cell RNAseq at PF2, by O.Sismeiro and M-A.Dillies

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18 Sep 2015
project

A personal database system for large scale quantitative results exploration (Cassandre, PTR 463)

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14 Sep 2015
project

HIV signature on RIG-I-like receptors

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10 Sep 2015
project

Role of neuronal, microglial and glial cells during rabies virus infection in the modulation of innate immune response: MIME-RAB

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08 Sep 2015
project

Dynamic regulation of chromatin and transcription by HP1 Heterochromatin Proteins in relationship with RNA.

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16 Jul 2015
team

RNA Biology of Fungal Pathogens

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18 Mar 2015
team

Biomics

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13 Mar 2015
project

Biostatistics for data analysis

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04 Feb 2015
project

Technological developments

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31 Jan 2015
project

Régulation transcriptionnelle par l’Enhancer de Trithorax et Polycomb Corto et la Protéine Ribosomique L12.

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10 Jan 2015
publication

Repressor activity of the RpoS/σS-dependent RNA polymerase requires DNA binding

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05 Dec 2014
publication

Differences in gene transcriptomic pattern of Plasmodium falciparum in children with cerebral malaria and asymptomatic carriers

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12 May 2014
publication

DYRK1A phoshorylates histone H3 to differentially regulate the binding of HP1 isoforms and antagonize HP1-mediated transcriptional repression

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08 May 2014
publication

Expanding the RpoS/σS-network by RNA sequencing and identification of σS-controlled small RNAs in Salmonella

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17 Apr 2014
publication

Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation

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03 Apr 2014
publication

Identified members of the Streptomyces lividans AdpA regulon involved in differentiation and secondary metabolism

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31 Mar 2014
publication

A putative regulatory genetic locus modulates virulence in the pathogen Leptospira interrogans

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05 Mar 2014
publication

Extracellular adenosine triphosphate affects the response of human macrophages infected with Mycobacterium tuberculosis

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22 Feb 2014
publication

Strand-specific RNA-Seq reveals widespread and developmentally regulated transcription of natural antisense transcripts in Plasmodium falciparum

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19 Dec 2013
publication

Identification of the virulence landscape essential for Entamoeba histolytica invasion of the human colon

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04 Oct 2013
publication

Induction of the Cpx envelope stress pathway contributes to Escherichia coli tolerance to antimicrobial peptides

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17 Sep 2013
publication

Identification and characterization of the genetic changes responsible for the characteristic smooth-to-rough morphotype alterations of clinically persistent Mycobacterium abscessus

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01 Aug 2013
publication

A role for SIRT2-dependent histone H3K18 deacetylation in bacterial infection

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22 May 2013
publication

Massive activation of archaeal defense genes during viral infection

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09 May 2013
publication

Genome-wide identification of regulatory RNAs in the human pathogen Clostridium difficile

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01 Apr 2013
publication

Identification of RNA partners of viral proteins in infected cells

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01 Feb 2013
publication

Quantification of stochastic noise of splicing and polyadenylation in Entamoeba histolytica

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03 Jan 2013
publication

Starvation, together with the SOS response, mediates high biofilm-specific tolerance to the fluoroquinolone ofloxacin

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01 Jan 2013
publication

Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26

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13 Dec 2012
publication

Distinct transcriptional signatures of bone marrow-derived C57BL/6 and DBA/2 dendritic leucocytes hosting live Leishmania amazonensis amastigotes

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21 Nov 2012
publication

Dicer-2- and Piwi-mediated RNA interference in Rift Valley fever virus-infected mosquito cells

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16 Aug 2012
publication

RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans

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01 Apr 2012
publication

Deep sequencing defines the transcriptional map of L. pneumophila and identifies growth phase-dependent regulated ncRNAs implicated in virulence

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12 Mar 2012
publication

Human cryptochrome-1 confers light independent biological activity in transgenic Drosophila correlated with flavin radical stability

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24 Feb 2012
publication

Endoplasmic reticulum stress-sensing mechanism is activated in Entamoeba histolytica upon treatment with nitric oxide

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24 Feb 2012
publication

Myf5 haploinsufficiency reveals distinct cell fate potentials for adult skeletal muscle stem cells

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27 Dec 2011
publication

Naive and primed murine pluripotent stem cells have distinct miRNA expression profiles

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29 Sep 2011
publication

Genome-wide analysis of heteroduplex DNA in mismatch repair-deficient yeast cells reveals novel properties of meiotic recombination pathways

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27 Aug 2011
publication

Extending KNIME for next-generation sequencing data analysis

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04 Apr 2011
publication

Artesunate tolerance in transgenic Plasmodium falciparum parasites overexpressing a tryptophan-rich protein

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13 Jan 2011
publication

Microarray estimation of genomic inter-strain variability in the genus Ectocarpus (Phaeophyceae)

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05 Jan 2011
publication

Overexpression of proinflammatory TLR-2-signalling lipoproteins in hypervirulent mycobacterial variants

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17 Dec 2010
publication

Temporal transcriptomic response during arsenic stress in Herminiimonas arsenicoxydans

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10 Jun 2010
publication

From array-based hybridization of Helicobacter pylori isolates to the complete genome sequence of an isolate associated with MALT lymphoma.

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10 Jun 2010
publication

From array-based hybridization of Helicobacter pylori isolates to the complete genome sequence of an isolate associated with MALT lymphoma

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01 Mar 2010
publication

Decreased in vitro susceptibility of Plasmodium falciparum isolates to artesunate, mefloquine, chloroquine, and quinine in Cambodia from 2001 to 2007

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26 Feb 2010
publication

Structure, function, and evolution of the Thiomonas spp. genome

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18 Feb 2010
publication

Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans

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30 Nov 2009
publication

The endogenous siRNA pathway is involved in heterochromatin formation in Drosophila

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15 Oct 2009
publication

FlexiChip package: an universal microarray with a dedicated analysis software for high-thoughput SNPs detection linked to anti-malarial drug resistance

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03 Aug 2009
publication

The global regulator CodY regulates toxin gene expression in Bacillus anthracis and is required for full virulence

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31 Jul 2009
publication

Identification of brevibacteriaceae by multilocus sequence typing and comparative genomic hybridization analyses

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10 Jul 2009
publication

Unusual composition of a yeast chromosome arm is associated with its delayed replication

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18 Jun 2009
publication

The Listeria transcriptional landscape from saprophytism to virulence.

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08 Jun 2009
publication

CymR, the master regulator of cysteine metabolism in Staphylococcus aureus, controls host sulphur source utilization and plays a role in biofilm formation

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20 Mar 2009
publication

Transcriptional signatures of BALB/c mouse macrophages housing multiplying Leishmania amazonensis amastigotes

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23 Feb 2009
publication

Field-based evidence of fast and global increase of Plasmodium falciparum drug-resistance by DNA-microarrays and PCR/RFLP in Niger

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06 Dec 2008
publication

Genomic polymorphism in the population of Candida glabrata: gene copy-number variation and chromosomal translocations

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25 Sep 2008
publication

Enhanced structural and functional genome elucidation of the arsenite-oxidizing strain Herminiimonas arsenicoxydans by proteomics data

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16 Sep 2008
publication

Transcriptomic analysis of the exit from dormancy of Aspergillus fumigatus conidia

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18 Aug 2008
publication

Dynamic RNA profiling in Plasmodium falciparum synchronized blood stages exposed to lethal doses of artesunate

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09 Jul 2008
publication

Do DNA microarrays have their future behind them?

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16 Apr 2008
publication

Chemotaxis of Entamoeba histolytica towards the pro-inflammatory cytokine TNF is based on PI3K signalling, cytoskeleton reorganization and the Galactose/N-acetylgalactosamine lectin activity

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01 Apr 2008
publication

AffyGCQC: a web-based interface to detect outlying genechips with extreme studentized deviate tests

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26 Mar 2008
publication

Plasmodium falciparum transcriptome analysis reveals pregnancy malaria associated gene expression

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25 Oct 2007
publication

Whole-transcriptome analysis of Plasmodium falciparum field isolates: identification of new pathogenicity factors

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01 Oct 2007
publication

Long oligonucleotide microarrays for African green monkey gene expression profile analysis.

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05 Sep 2007
publication

Rapid microarray-based method for monitoring of all currently known single-nucleotide polymorphisms associated with parasite resistance to antimalaria drugs

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01 Sep 2007
publication

Transcriptome analysis of Yersinia pestis in human plasma: an approach for discovering bacterial genes involved in septicaemic plague.

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17 Aug 2007
publication

The lysine- and glutamic acid-rich protein KERP1 plays a role in Entamoeba histolytica liver abscess pathogenesis

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03 Aug 2007
publication

Histone modifications induced by a family of bacterial toxins

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01 Jan 2007
publication

Bringing the genome of Legionella pneumophila to life (book chapter)

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01 Aug 2006
publication

Virulence strategies for infecting phagocytes deduced from the in vivo transcriptional program of Legionella pneumophila

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01 May 2006
publication

Stress by heat shock induces massive down regulation of genes and allows differential allelic expression of the Gal/GalNAc lectin in Entamoeba histolytica

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15 Jan 2006
publication

Anti-inflammatory effect of Lactobacillus casei on Shigella-infected human intestinal epithelial cells

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31 Oct 2005
publication

Transcriptome analysis of antigenic variation in Plasmodium falciparum–var silencing is not dependent on antisense RNA

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13 May 2005
publication

On the origin of leprosy

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01 Jan 2005
publication

Adherence modifies the regulation of gene expression induced by interleukin-10

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01 Jan 2004
publication

GadE (YhiE): a novel activator involved in the response to acid environment in Escherichia coli

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01 Mar 2003
publication

Transcriptome analysis of Listeria monocytogenes identifies three groups of genes differently regulated by PrfA

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