Timeline

Christophe Zimmer
Head of Structure
31 May 2019
publication

ImJoy: an open-source computational platform for the deep learning era

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05 Mar 2019
publication

How the Genome Folds: The Biophysics of Four-Dimensional Chromatin Organization

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07 Nov 2018
event

The 26th Pasteur-Weizmann symposium

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02 Nov 2018
publication

A computational framework to study sub-cellular RNA localization

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07 Sep 2018
software

ZOLA-3D Zernike Optimized Localization approach

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17 Jul 2018
event

Neural networks – From brains to machines and vice versa

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19 Jun 2018
publication

ZOLA-3D allows flexible 3D localization microscopy over an adjustable axial range

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08 Jun 2018
publication

Chromatin mobility upon DNA damage: state of the art and remaining questions

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29 May 2018
publication

Visualization of Arenavirus RNA Species in Individual Cells by Single-Molecule Fluorescence Hybridization Suggests a Model of Cyclical Infection and Clearance during Persistence

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23 Apr 2018
software

ANNA-PALM

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16 Apr 2018
publication

Deep learning massively accelerates super-resolution localization microscopy

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01 Jan 2018
publication

From dynamic chromatin architecture to DNA damage repair and back

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01 Dec 2017
publication

GPI-anchored proteins are confined in subdiffraction clusters at the apical surface of polarized epithelial cells

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15 Sep 2017
publication

Functional organization of cytoplasmic inclusion bodies in cells infected by respiratory syncytial virus

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10 Jul 2017
publication

Chromatin stiffening underlies enhanced locus mobility after DNA damage in budding yeast

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12 Jun 2017
publication

Faster and less phototoxic 3D fluorescence microscopy using a versatile compressed sensing scheme

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03 May 2017
publication

Inferring the physical properties of yeast chromatin through Bayesian analysis of whole nucleus simulations

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28 Oct 2016
program_project

INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations

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05 Sep 2016
publication

smiFISH and FISH-quant – a flexible single RNA detection approach with super-resolution capability

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27 Jul 2016
publication

A single-molecule view of transcription reveals convoys of RNA polymerases and multi-scale bursting

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01 Jul 2016
project

Deep learning for biology

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13 Jan 2016
publication

Evidence for a dual role of actin in regulating chromosome organization and dynamics in yeast

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05 Jan 2016
publication

Evidence for actin dual role in regulating chromosome organization and dynamics in yeast

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11 Sep 2015
software

GRAAL: genome assembly from chromosome contact frequencies

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11 Sep 2015
software

FISH-quant: automatically counting transcripts in RNA-FISH images

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11 Sep 2015
software

QuickPALM: Reconstruction of PALM/STORM super-resolution microscopy images

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11 Sep 2015
software

Nucloc: mapping gene territories in the yeast nucleus

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06 Jun 2015
project

Pointillist nanoscopy

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06 Jun 2015
project

Nuclear architecture and function

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11 May 2015
team

Imaging and Modeling

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06 Mar 2015
publication

Chromatin organization at the nuclear pore favours HIV replication

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17 Dec 2014
publication

High-quality genome (re)assembly using chromosomal contact data

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02 Dec 2014
team

Bioimage Analysis

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26 Jun 2014
publication

Transcription factors modulate c-Fos transcriptional bursts

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07 Apr 2014
publication

Filling annotation gaps in yeast genomes using genome-wide contact maps

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01 Jan 2014
publication

FlAsH-PALM: super-resolution pointillist imaging with FlAsH-tetracysteine labeling

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01 Jan 2014
publication

Computational models of large-scale genome architecture

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07 Oct 2013
publication

Regulated vesicle fusion generates signaling nanoterritories that control T cell activation at the immunological synapse

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22 Aug 2013
publication

How to build a yeast nucleus

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22 Jul 2013
publication

Systematic characterization of the conformation and dynamics of budding yeast chromosome XII

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05 May 2013
publication

Effect of nuclear architecture on the efficiency of double-strand break repair

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26 Apr 2013
publication

Species-specific impact of the autophagy machinery on Chikungunya virus infection

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01 Apr 2013
publication

FISH-quant: automatic counting of transcripts in 3D FISH images

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01 Nov 2012
publication

From microbes to numbers: extracting meaningful quantities from images

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31 Oct 2012
publication

Single-molecule localization super-resolution microscopy: deeper and faster

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30 Aug 2012
publication

A predictive computational model of the dynamic 3D interphase yeast nucleus

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14 May 2012
publication

Superresolution imaging of HIV in infected cells with FlAsH-PALM

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23 Apr 2012
publication

Hierarchies of host factor dynamics at the entry site of Shigella flexneri during host cell invasion

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01 Mar 2011
publication

Principles of chromosomal organization: lessons from yeast

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17 Jan 2011
publication

Super-resolution dynamic imaging of dendritic spines using a low-affinity photoconvertible actin probe

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18 Nov 2010
publication

Entrapment of intracytosolic bacteria by septin cage-like structures

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01 May 2010
publication

QuickPALM: 3D real-time photoactivation nanoscopy image processing in ImageJ

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13 Jan 2010
publication

Chromosome arm length and nuclear constraints determine the dynamic relationship of yeast subtelomeres

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02 Nov 2008
publication

High-resolution statistical mapping reveals gene territories in live yeast

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17 May 2008
publication

Improving single particle localization with an empirically calibrated Gaussian kernel

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01 Jun 2006
publication

SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope

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01 Apr 2006
publication

Richardson-Lucy algorithm with total variation regularization for 3D confocal microscope deconvolution

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01 Feb 2006
publication

Human tumor necrosis factor is a chemoattractant for the parasite Entamoeba histolytica

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01 Nov 2005
publication

Coupled parametric active contours

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01 Sep 2005
publication

Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces

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01 Jan 2005
publication

Myosin II and the Gal-GalNAc lectin play a crucial role in tissue invasion by Entamoeba histolytica

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01 Jul 2004
publication

Imaging movement of malaria parasites during transmission by Anopheles mosquitoes

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01 Jan 2003
publication

EhPAK, a member of the p21-activated kinase family, is involved in the control of Entamoeba histolytica migration and phagocytosis

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01 Nov 2002
publication

Membrane-cytoskeleton interactions during the formation of the immunological synapse and subsequent T-cell activation

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01 Oct 2002
publication

Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours: a tool for cell-based drug testing

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