2021 Computational Biology Department Days

Monday November 29, afternoon

Session chair: R. Chikhi

14:15 C. Zimmer: Welcome and introduction
14:30 Imaging and Modeling Unit
- C. Zimmer: Imaging and modeling high resolution chromatin structure
- J. Bai: Enhancing super-resolution microscopy with deep learning
15:00 Bioinformatics & Biostatistics Hub
- M-A. Dillies: Overview of the Hub
- G. Millot: A New Route For Integron Cassette Dissemination Among Bacterial Genomes
15:20 Microbial Evolutionary Genomics Unit
- J. Moura de Sousa: To catch a hijacker: abundance, evolution and genetic diversity of P4-like bacteriophage satellites
15:40 InBio
- G. Batt: Experimental and Computational Methods for Modeling Cellular Processes
- J. Ruess: From Single Cells To Populations And Back: Optogenetic Control Of Microbial Communities
16:10 Coffee break

Session chair: David Di Gregorio

17:00 Microbial Paleogenomics Unit
- N. Rascovan: The computational challenges of Microbial paleogenomics
17:20 Systems Biology Group
- B. Schwikowski: The Systems Biology Group
- E. Zakiev: Search for gene signatures in ovarian cancer
17:50 Bioinformatics & Biostatistics Hub
- E. Permal: Overview of Hub contribution through Covid pandemic crisis
18:10 Direction des Applications de la Recherche et des Relations Industrielles
- A. Borderia & E. Brient-Litzler: How algorithms become products: key challenges and examples
18:15 Poster session 1

Tuesday November 30, morning

Session chair: Thomas Gregor

9:30 Sequence Bioinformatics Group
- R. Chikhi: The Sequence Bioinformatics group
- L. Denti: Human structural variant detection with accurate long reads
10:00 Structural Bioinformatics Unit
- O. Sperandio: In silico contributions to the design of therapeutic compounds against protein-protein interactions
10:20 Coffee break

Session chair: Nicolas Rascovan

10:50 Spatial Organisation of Genomes Unit
- A. Cournac: Spatial Organization of Genomes
11:10 Institut Necker Enfant Malades
- M. Pontoglio: HNF1B, a bookmarking transcription factor at the heart of cell quiescence/differentiation
11:30 Institut Necker Enfant Malades
- G. Panasyuk : Metabolomics sheds light on surprising function of the ancient signaling pathway in maintaining metabolic homeostasis
11:50 Physics of Biological Function Unit
- T. Gregor: Linking DNA polymer and transcription dynamics
12:10 Lunch

Tuesday November 30, afternoon

Session chair: Ganna Panasyuk

14:15 Keynote 1:
- J-P. Vert: Deep language models for DNA and proteins
15:00 Synapse and Circuit Dynamics Unit
- D. DiGregorio: Temporal predictions using biological neural networks
15:20 Free activities
18:30 Poster session 2

Wednesday December 1, morning

Session chair: Benno Schwikowski

9:30 Keynote 2:
- I. Bloch: Hybrid AI for biomedical image understanding – Towards explainability
10:15 Coffee break
10:55 Decision and Bayesian Computation Group
- F. Laurent: Single-molecule localization microscopy
11:15 Bioinformatics & Biostatistics Hub
- O. Mirabeau: Spatial transcriptomics in Zebrafish
11:35 Bioinformatics & Biostatistics Hub
- R. Torchet + H. Julienne: Gender Speaking Differences in Academia
11:55 Statistical Genetics Group
- H. Aschard: Genetic Epidemiology in the Big Data era
- A. Frouin: Use of new kernel matrix for bacterial GWAS
- C Boetto: Dissecting The Predictors Of Microbiome Variability
12:25 Lunch

Wednesday December 1, afternoon

Session chair: Gaël Millot

14:15 Centre de Ressources en information scientifique (CeRiS)
- A-C Delétoille: Policy on the management and sharing of research data and software code
14:30 Direction des Systèmes Informatiques (DSI)
- Y. Ghorbal: HPC resources @Pasteur (past, current and future)
14:45 Metagenomic signatures
- S. Kennedy: Perinatal mother-infant microbiota
15:05 Evolutionary Bioinformatics Unit
- A. Zhukova: Cuban history of CRF19 recombinant subtype of HIV-1
15:25 G. Batt: Closing words

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Please send any inquiries to JDDBC_list@pasteur.fr

Address: Center Parcs Les Bois Francs, 27130 Les Barils, France