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  • Undergraduate Student
  • Veterinary
  • Visiting Scientist
  • Deputy Director of Center
  • Deputy Director of Department
  • Deputy Director of National Reference Center
  • Deputy Head of Facility
  • Director of Center
  • Director of Department
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Scientific Fields
Diseases
Organisms
Applications
Technique
Starting Date
29
Nov 2021
Ending Date
01
Dec 2021
Time
00:00:00
Center Parcs Les Bois Francs, 27130 Les Barils, France
Address
2021-11-29 00:00:00 2021-12-01 00:00:00 Europe/Paris 2021 Computational Biology Department Days Scientific Program Monday November 29, afternoon Session chair: R. Chikhi 14:15 C. Zimmer: Welcome and introduction 14:30 Imaging and Modeling Unit C. Zimmer: Imaging and modeling high resolution chromatin structure J. Bai: Enhancing super-resolution microscopy […] Center Parcs Les Bois Francs, 27130 Les Barils, France Vincent Guillemot vincent.guillemot@pasteur.fr

About

Scientific Program

Monday November 29, afternoon

Session chair: R. Chikhi

  • 14:15 C. Zimmer: Welcome and introduction
  • 14:30 Imaging and Modeling Unit
    • C. Zimmer: Imaging and modeling high resolution chromatin structure
    • J. Bai: Enhancing super-resolution microscopy with deep learning 
  • 15:00 Bioinformatics & Biostatistics Hub
    • M-A. Dillies: Overview of the Hub
    • G. Millot: A New Route For Integron Cassette Dissemination Among Bacterial Genomes
  • 15:20 Microbial Evolutionary Genomics Unit
    • J. Moura de Sousa: To catch a hijacker: abundance, evolution and genetic diversity of P4-like bacteriophage satellites
  • 15:40 InBio
    • G. Batt: Experimental and Computational Methods for Modeling Cellular Processes
    • J. Ruess: From Single Cells To Populations And Back: Optogenetic Control Of Microbial Communities
  • 16:10 Coffee break

Session chair: TBD

  • 17:00 Microbial Paleogenomics Unit
    • N. Rascovan: The computational challenges of Microbial paleogenomics
  • 17:20 Systems Biology Group
    • B. Schwikowski: The Systems Biology Group
    • E. Zakiev: Search for gene signatures in ovarian cancer
  • 17:50 Bioinformatics & Biostatistics Hub
    • E. Permal: Overview of Hub contribution through Covid pandemic crisis
  • 18:10 Direction des Applications de la Recherche et des Relations Industrielles
    • A. Borderia & E. Brient-Litzler: How algorithms become products: key challenges and examples
  • 18:15 Poster session 1

Tuesday November 30, morning

Session chair: TBD

  • 9:30 Sequence Bioinformatics Group
    • R. Chikhi: The Sequence Bioinformatics group
    • L. Denti: Human structural variant detection with accurate long reads
  • 10:00 Structural Bioinformatics Unit
    • O. Sperandio: In silico contributions to the design of therapeutic compounds against protein-protein interactions
  • 10:20 Coffee break

Session chair: TBD

  • 10:50 Statistical Genetics Group
    • H. Aschard: Genetic Epidemiology in the Big Data era 
    • A. Frouin: Use of new kernel matrix for bacterial GWAS
    • C Boetto: Dissecting The Predictors Of Microbiome Variability
  • 11:20 Bioinformatics & Biostatistics Hub
    • R. Torchet + H. Julienne: Gender Speaking Differences in Academia
  • 11:40 Institut Necker Enfant Malades
    • G. Panasyuk : Metabolomics sheds light on surprising function of the ancient signaling pathway in maintaining metabolic homeostasis
  • 12:00 Physics of Biological Function Unit
    • T. Gregor: Linking DNA polymer and transcription dynamics
  • 12:20 Lunch

 

Tuesday November 30, afternoon

Session chair: TBD

  • 14:15 Keynote 1:
    • J-P. Vert: Deep language models for DNA and proteins
  • 15:00 Synapse and Circuit Dynamics Unit
    • D. DiGregorio: Temporal predictions using biological neural networks
  • 15:20 Free activities
  • 18:30 Poster session 2

 

Wednesday December 1, morning

Session chair: TBD

  • 9:30 Keynote 2:
    • I. Bloch: Hybrid AI for biomedical image understanding – Towards explainability
  • 10:15 Coffee break
  • 10:55 Decision and Bayesian Computation Group
    • F. Laurent: Single-molecule localization microscopy
  • 11:15 Bioinformatics & Biostatistics Hub 
    • O. Mirabeau: Spatial transcriptomics in Zebrafish
  • 11:35 Institut Necker Enfant Malades
    • M. Pontoglio: HNF1B, a bookmarking transcription factor at the heart of cell quiescence/differentiation
  • 11:55 Spatial Organisation of Genomes Unit
    • A. Cournac: Spatial Organization of Genomes
  • 12:15 Lunch

 

Wednesday December 1, afternoon

Session chair: TBD

  • 14:15 Centre de Ressources en information scientifique (CeRiS)
    • A-C Delétoille: Policy on the management and sharing of research data and software code
  • 14:30 Direction des Systèmes Informatiques (DSI)
    • Y. Ghorbal: HPC resources @Pasteur (past, current and future)
  • 14:45 Metagenomic signatures
    • S. Kennedy: Perinatal mother-infant microbiota
  • 15:05 Evolutionary Bioinformatics Unit
    • A. Zhukova: Cuban history of CRF19 recombinant subtype of HIV-1
  • 15:25 G. Batt: Closing words

Proceedings (preliminary version)

Download (PDF, 4.26MB)

Practical information

Getting to the venue: https://www.centerparcs.fr/fr-fr/france/fp_BF_vacances-domaine-les-bois-francs/itineraire

Contact

Please send any inquiries to JDDBC_list@pasteur.fr

Location

Address: Center Parcs Les Bois Francs, 27130 Les Barils, France