Timeline

Hugo Varet
Research Engineer
01 Dec 2021
publication

The oxidative stress response of pathogenic Leptospira is controlled by two peroxide stress regulators which putatively cooperate in controlling virulence.

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22 Oct 2021
publication

Sleeping ribosomes: Bacterial signaling triggers RaiA mediated persistence to aminoglycosides.

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17 Oct 2021
publication

Role of the major determinant of polar flagellation FlhG in the endoflagella-containing spirochete Leptospira.

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01 Sep 2021
publication

The CovR regulatory network drives the evolution of Group B Streptococcus virulence.

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27 Jul 2021
publication

HP1γ binding pre-mRNA intronic repeats modulates RNA splicing decisions.

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10 Jun 2021
publication

Transcriptional adaptation of Mycobacterium ulcerans in an original mouse model: New insights into the regulation of mycolacton

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18 May 2021
publication

Functional Genomic and Biochemical Analysis Reveals Pleiotropic Effect of Congo Red on Aspergillus fumigatus.

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16 Apr 2021
course

1ème Ecole de Bioinformatique AVIESAN – IFB – INSERM Niveau 2

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09 Mar 2021
publication

Queuine Is a Nutritional Regulator of Entamoeba histolytica Response to Oxidative Stress and a Virulence Attenuator.

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24 Feb 2021
publication

SIV-induced terminally differentiated adaptive NK cells in lymph nodes associated with enhanced MHC-E restricted activity.

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18 Feb 2021
publication

Tissue damage induces a conserved stress response that initiates quiescent muscle stem cell activation.

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18 Jan 2021
team

Metabolomics Core Facility

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12 Jan 2021
project

Insights into amebiasis using a human 3D-intestinal model (ANR-14-IFEC-0001-02)

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08 Jan 2021
project

Understanding the Pathogenicity of Entamoeba Using Comparative Transcriptomics and Phylogenomics – GENAMIBE. Project-ANR-10-GENM-0011

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06 Jan 2021
publication

Aspergillus fumigatus, One Uninucleate Species with Disparate Offspring.

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05 Jan 2021
publication

Characterization of a Four-Component Regulatory System Controlling Bacteriocin Production in Streptococcus gallolyticus.

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01 Jan 2021
publication

CD32+CD4+ T Cells Sharing B Cell Properties Increase With Simian Immunodeficiency Virus Replication in Lymphoid Tissues.

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02 Dec 2020
publication

4-Methylcytosine DNA modification is critical for global epigenetic regulation and virulence in the human pathogen Leptospira interrogans.

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01 Nov 2020
publication

Functionally distinct resident macrophage subsets differentially shape responses to infection in the bladder.

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09 Oct 2020
publication

Effect of arsenite and growth in biofilm conditions on the evolution of Thiomonas sp. CB2.

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06 Oct 2020
publication

The transcriptional response of pathogenic Leptospira to peroxide reveals new defenses against infection-related oxidative stress.

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24 Sep 2020
course

Bioinformatics program for PhD students 2020-2021

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25 Aug 2020
publication

Cellular and molecular profiling of T-cell subsets at the onset of human acute GVHD.

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01 Aug 2020
publication

Insights into amebiasis using a human 3D-intestinal model.

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09 Jun 2020
publication

Leishmania amazonensis Subverts the Transcription Factor Landscape in Dendritic Cells to Avoid Inflammasome Activation and Stall Maturation

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02 Jun 2020
publication

Human Immune Response Triggered by Entamoeba histolytica in a 3D-Intestinal Model

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14 May 2020
publication

BAHD1 haploinsufficiency results in anxiety-like phenotypes in male mice

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04 May 2020
publication

Intracellular Staphylococcus aureus persisters upon antibiotic exposure

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29 Apr 2020
publication

Macromolecular crowding links ribosomal protein gene dosage to growth rate in Vibrio cholerae

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13 Apr 2020
publication

Transcytosis subversion by M cell-to-enterocyte spread promotes Shigella flexneri and Listeria monocytogenes  intracellular bacterial dissemination

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20 Mar 2020
project

Deciphering the mechanisms of infection of lyssaviruses at the cellular level in bats

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11 Feb 2020
publication

Targeting Macrophage Histone H3 Modification as a Leishmania Strategy to Dampen the NF-κB/NLRP3-Mediated Inflammatory Response.

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11 Feb 2020
publication

Tudor-SN Promotes Early Replication of Dengue Virus in the Aedes aegypti Midgut.

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03 Feb 2020
publication

Bread feeding is a robust and more physiological enteropathogen administration method compared to oral gavage

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08 Nov 2019
publication

Mycobacterium abscessus virulence traits unraveled by transcriptomic profiling in amoeba and macrophages

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21 Oct 2019
publication

Non-specific interference of cobalt with siderophore-dependent iron uptake pathways

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02 Aug 2019
team

Biomics – Dry-Lab

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01 Jul 2019
publication

Cryptococcus neoformans resists to drastic conditions by switching to viable but non-culturable cell phenotype.

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15 May 2019
publication

Transcriptional profiling of a laboratory and clinical Mycobacterium tuberculosis strain suggests respiratory poisoning upon exposure to delamanid

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10 Jan 2019
publication

Immune parameters and outcomes during Ebola virus disease

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25 Aug 2018
publication

checkMyIndex: a web-based R/Shiny interface for choosing compatible sequencing indexes

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19 Jul 2018
course

Introduction to data analysis

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19 Jul 2018
course

Morning session – Introduction to NGS data analysis

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19 Jul 2018
course

Morning session – Data analysis using R

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19 Jul 2018
course

Introduction to Data Analysis

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19 Jul 2018
course

Introduction to Data Analysis

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19 Jul 2018
course

Introduction to Data Analysis

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06 Jul 2018
publication

Enzymatic synthesis of random sequences of RNA and RNA analogues by DNA polymerase theta mutants for the generation of aptamer libraries

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13 Jun 2018
publication

Enteric bacteria boost defences against oxidative stress in Entamoeba histolytica

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21 May 2018
publication

Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation

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16 May 2018
course

7ème école de bioinformatique AVIESAN-IFB

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15 May 2018
publication

A CRISPRi screen in E. coli reveals sequence-specific toxicity of dCas9

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28 Mar 2018
team

Expertise group : Stats

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28 Mar 2018
team

Expertise group: GORE – Genome Organization Regulation and Expression

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27 Dec 2017
news

Hot off the press: DENV host factors identified by innovative transcriptomics approach

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14 Nov 2017
publication

In Situ Fixation Redefines Quiescence and Early Activation of Skeletal Muscle Stem Cells

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19 Apr 2017
course

6ème école de bioinformatique AVIESAN-IFB

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07 Feb 2017
publication

Comparison of biofilm formation and motility processes in arsenic-resistant Thiomonas spp. strains revealed divergent response to arsenite

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02 Feb 2017
project

Deciphering the virulence factors of Mycobacterium abscessus activated in the presence of environmental amoebae

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31 Jan 2017
project

Transcriptome of different quiescence sub-states of neural stem cells in adult zebrafish

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31 Jan 2017
project

The role of lncRNA H19 in Thymopoiesis

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27 Jan 2017
news

checkMyIndex: a new tool to choose sequencing indexes

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26 Jan 2017
tool

checkMyIndex

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10 Jan 2017
publication

Promyelocytic Leukemia Protein (PML) Controls Listeria monocytogenes Infection

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29 Nov 2016
course

5ème école de bioinformatique AVIESAN-IFB

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21 Oct 2016
publication

Extensive transcriptome analysis correlates the plasticity of Entamoeba histolytica pathogenesis to rapid phenotype changes depending on the environment

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12 Oct 2016
event

5th school of bioinformatics AVIESAN-IFB

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09 Jun 2016
publication

SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data

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18 May 2016
project

Gene expression profiling in germinal center B cells

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18 May 2016
software

SARTools

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26 Apr 2016
event

Training: analysis of the transcriptome by RNAseq

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20 Apr 2016
course

Training: analysis of the transcriptome by RNAseq

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05 Feb 2016
publication

Gender as a Modifying Factor Influencing Myotonic Dystrophy Type 1 Phenotype Severity and Mortality: A Nationwide Multiple Databases Cross-Sectional Observational Study

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05 Nov 2015
publication

Deficiency of multidrug resistance 2 contributes to cell transformation through oxidative stress

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20 Oct 2015
publication

Normal and Cystic Fibrosis Human Bronchial Epithelial Cells Infected with Pseudomonas aeruginosa Exhibit Distinct Gene Activation Patterns

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30 Sep 2015
news

4th Bioinformatics school AVIESAN, Hugo Varet course

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14 Sep 2015
project

HIV signature on RIG-I-like receptors

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08 Sep 2015
project

Dynamic regulation of chromatin and transcription by HP1 Heterochromatin Proteins in relationship with RNA.

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06 Sep 2015
project

Functional characterization of mosquito genes involved in dengue virus transmission identified by RNA-seq at the individual midgut level

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26 Jun 2015
team

Bioinformatics and Biostatistics HUB

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18 Mar 2015
team

Biomics

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31 Jan 2015
project

Régulation transcriptionnelle par l’Enhancer de Trithorax et Polycomb Corto et la Protéine Ribosomique L12.

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01 Jul 2014
publication

Ventilator-associated pneumonia during weaning from mechanical ventilation: role of fluid management

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08 Sep 2012
publication

Revisiting the classification of clinical phenotypes of anti-neutrophil cytoplasmic antibody-associated vasculitis: a cluster analysis

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