Timeline

Hugo Varet
Research Engineer
11 Feb 2020
publication

Targeting Macrophage Histone H3 Modification as a Leishmania Strategy to Dampen the NF-κB/NLRP3-Mediated Inflammatory Response

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11 Feb 2020
publication

Tudor-SN Promotes Early Replication of Dengue Virus in the Aedes aegypti Midgut

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03 Feb 2020
publication

Bread feeding is a robust and more physiological enteropathogen administration method compared to oral gavage

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08 Nov 2019
publication

Mycobacterium abscessus virulence traits unraveled by transcriptomic profiling in amoeba and macrophages

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21 Oct 2019
publication

Non-specific interference of cobalt with siderophore-dependent iron uptake pathways

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01 Oct 2019
course

Bioinformatics program for PhD students

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02 Aug 2019
team

Biomics – Dry-Lab

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29 Jul 2019
publication

Cryptococcus neoformans resists to drastic conditions by switching to viable but non-culturable cell phenotype

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15 May 2019
publication

Transcriptional profiling of a laboratory and clinical Mycobacterium tuberculosis strain suggests respiratory poisoning upon exposure to delamanid

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10 Jan 2019
publication

Immune parameters and outcomes during Ebola virus disease

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25 Aug 2018
publication

checkMyIndex: a web-based R/Shiny interface for choosing compatible sequencing indexes

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19 Jul 2018
course

Introduction to data analysis

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19 Jul 2018
course

Morning session – Introduction to NGS data analysis

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19 Jul 2018
course

Morning session – Data analysis using R

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19 Jul 2018
course

Introduction to Data Analysis

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19 Jul 2018
course

Introduction to Data Analysis

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19 Jul 2018
course

Introduction to Data Analysis

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06 Jul 2018
publication

Enzymatic synthesis of random sequences of RNA and RNA analogues by DNA polymerase theta mutants for the generation of aptamer libraries

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13 Jun 2018
publication

Enteric bacteria boost defences against oxidative stress in Entamoeba histolytica

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21 May 2018
publication

Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation

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16 May 2018
course

7ème école de bioinformatique AVIESAN-IFB

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15 May 2018
publication

A CRISPRi screen in E. coli reveals sequence-specific toxicity of dCas9

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28 Mar 2018
team

Expertise group : Stats

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28 Mar 2018
team

Expertise group: GORE – Genome Organization Regulation and Expression

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27 Dec 2017
news

Hot off the press: DENV host factors identified by innovative transcriptomics approach

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19 Dec 2017
publication

Individual co-variation between viral RNA load and gene expression reveals novel host factors during early dengue virus infection of the Aedes aegypti midgut

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14 Nov 2017
publication

In Situ Fixation Redefines Quiescence and Early Activation of Skeletal Muscle Stem Cells

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19 Apr 2017
course

6ème école de bioinformatique AVIESAN-IFB

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07 Feb 2017
publication

Comparison of biofilm formation and motility processes in arsenic-resistant Thiomonas spp. strains revealed divergent response to arsenite

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02 Feb 2017
project

Deciphering the virulence factors of Mycobacterium abscessus activated in the presence of environmental amoebae

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31 Jan 2017
project

Transcriptome of different quiescence sub-states of neural stem cells in adult zebrafish

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31 Jan 2017
project

The role of lncRNA H19 in Thymopoiesis

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27 Jan 2017
news

checkMyIndex: a new tool to choose sequencing indexes

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26 Jan 2017
tool

checkMyIndex

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10 Jan 2017
publication

Promyelocytic Leukemia Protein (PML) Controls Listeria monocytogenes Infection

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29 Nov 2016
course

5ème école de bioinformatique AVIESAN-IFB

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21 Oct 2016
publication

Extensive transcriptome analysis correlates the plasticity of Entamoeba histolytica pathogenesis to rapid phenotype changes depending on the environment

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12 Oct 2016
event

5th school of bioinformatics AVIESAN-IFB

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09 Jun 2016
publication

SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data

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01 Jun 2016
project

Private: Understanding translation fidelity in yeast

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18 May 2016
project

Gene expression profiling in germinal center B cells

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18 May 2016
software

SARTools

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26 Apr 2016
event

Training: analysis of the transcriptome by RNAseq

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20 Apr 2016
course

Training: analysis of the transcriptome by RNAseq

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05 Feb 2016
publication

Gender as a Modifying Factor Influencing Myotonic Dystrophy Type 1 Phenotype Severity and Mortality: A Nationwide Multiple Databases Cross-Sectional Observational Study

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05 Nov 2015
publication

Deficiency of multidrug resistance 2 contributes to cell transformation through oxidative stress

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20 Oct 2015
publication

Normal and Cystic Fibrosis Human Bronchial Epithelial Cells Infected with Pseudomonas aeruginosa Exhibit Distinct Gene Activation Patterns

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30 Sep 2015
news

4th Bioinformatics school AVIESAN, Hugo Varet course

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14 Sep 2015
project

HIV signature on RIG-I-like receptors

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08 Sep 2015
project

Dynamic regulation of chromatin and transcription by HP1 Heterochromatin Proteins in relationship with RNA.

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06 Sep 2015
project

Functional characterization of mosquito genes involved in dengue virus transmission identified by RNA-seq at the individual midgut level

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26 Jun 2015
team

Bioinformatics and Biostatistics HUB

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18 Mar 2015
team

Biomics

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31 Jan 2015
project

Régulation transcriptionnelle par l’Enhancer de Trithorax et Polycomb Corto et la Protéine Ribosomique L12.

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01 Jul 2014
publication

Ventilator-associated pneumonia during weaning from mechanical ventilation: role of fluid management

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08 Sep 2012
publication

Revisiting the classification of clinical phenotypes of anti-neutrophil cytoplasmic antibody-associated vasculitis: a cluster analysis

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