• 2024
  Jill-Léa Ramassamy, Ahidjo Ayouba, Guillaume Thaurignac, Chanceline Bilounga Ndongo, Patrick Nnuka, Edouard Betsem, Richard Njouom, Eitel Mpoudi Ngole, Jessica Vanhomwegen, Damien Hoinard, Patrick England, Alexandra Journeaux, Caroline Picard, Damien Thomas, Delphine Pannetier, Sylvain Baize, Eric Delaporte, Martine Peeters, Antoine Gessain, High seroreactivities to orthoebolaviruses in rural Cameroon: a case-control study on non-human primate bites and a cross-sectional survey in rural population, Journal of Infectious Diseases, 2024, pp.jiae399. ⟨10.1093/infdis/jiae399⟩.
• 2023
  Kane Y, Tendu A, Li R, Chen Y, Mastriani E, Lan J, Hughes AC, Berthet N, Wong G, Viral diversity in wild and urban rodents of Yunnan Province, China., Emerg Microbes Infect 2023 Dec; (): 2290842.
• 2023
  Reynes JM, Schaeffer L, Papadopoulos P, Ait-Ahmed M, Siby-Diakite D, Ripaux-Lefèvre M, Buivan TP, Lechat S, Vray M, Galempoix JM, Molecular Detection of Orthohantavirus puumalaense in Plasma and Urine Samples from Hospitalized Patients Presenting with a Serologically Confirmed Acute Hantavirus Infection in France., J Clin Microbiol 2023 Aug; 61(8): e0037223.
• 2023
  Hubert M, Guivel-Benhassine F, Bruel T, Porrot F, Planas D, Vanhomwegen J, Wiedemann A, Burrel S, Marot S, Palich R, Monsel G, Diombera H, Gallien S, Lopez-Zaragoza JL, Vindrios W, Taieb F, Fernandes-Pellerin S, Delhaye M, Laude H, Arowas L, Ungeheuer MN, Hocqueloux L, Pourcher V, Prazuck T, Marcelin AG, Lelièvre JD, Batéjat C, Lévy Y, Manuguerra JC, Schwartz O, Complement-dependent mpox-virus-neutralizing antibodies in infected and vaccinated individuals., Cell Host Microbe 2023 Jun; 31(6): 937-948.e4.
• 2023
  Besombes C, Mbrenga F, Malaka C, Gonofio E, Schaeffer L, Konamna X, Selekon B, Namsenei-Dankpea J, Gildas Lemon C, Landier J, von Platen C, Gessain A, Manuguerra JC, Fontanet A, Nakouné E, Investigation of a mpox outbreak in Central African Republic, 2021-2022., One Health 2023 Jun; 16(): 100523.
• 2023
  Charlotte Balière, Véronique Hourdel, Aurelia Kwasiborski, Quentin Grassin, Maxence Feher, Damien Hoinard, Jessica Vanhomwegen, Fabien Taieb, Paul-Henri Consigny, Jean-Claude Manuguerra, India Leclercq, Christophe Batéjat, Valérie Caro, Complete Genome Sequences of Monkeypox Virus from a French Clinical Sample and the Corresponding Isolated Strain, Obtained Using Nanopore Sequencing., Microbiology Resource Announcements, 2023, 12 (4), pp.e0000923. ⟨10.1128/mra.00009-23⟩.
• 2022
  Yu C, Zuo L, Miao J, Mao L, Selekon B, Gonofio E, Nakoune E, Berthet N, Wong G, Development of a Novel Loop-Mediated Isothermal Amplification Method for the Rapid Detection of Monkeypox Virus Infections., Viruses 2022 Dec; 15(1): .
• 2022
  Ten Bosch Q, Andrianaivoarimanana V, Ramasindrazana B, Mikaty G, Rakotonanahary RJ, Nikolay B, Rahajandraibe S, Feher M, Grassin Q, Paireau J, Rahelinirina S, Randremanana R, Rakotoarimanana F, Melocco M, Rasolofo V, Pizarro-Cerda J, Le Guern AS, Bertherat E, Ratsitorahina M, Spiegel A, Baril L, Rajerison M, Cauchemez S, , Analytical framework to evaluate and optimize the use of imperfect diagnostics to inform outbreak response: Application to the 2017 plague epidemic in Madagascar., PLoS Biol 2022 Aug; 20(8): e3001736.
• 2022
  Christophe Batéjat, Quentin Grassin, Maxence Feher, Damien Hoinard, Jessica Vanhomwegen, Jean-Claude Manuguerra, India Leclercq, Heat inactivation of monkeypox virus, Journal of Biosafety and Biosecurity 4 (2022) 121-123.
• 2022
  Mastriani E, Bienes KM, Wong G, Berthet N, , PIMGAVir and Vir-MinION: Two Viral Metagenomic Pipelines for Complete Baseline Analysis of 2nd and 3rd Generation Data., Viruses 2022 Jun; 14(6): .
• 2021
  Marchio A, Batejat C, Vanhomwegen J, Feher M, Grassin Q, Chazal M, Raulin O, Farges-Berth A, Reibel F, Estève V, Dejean A, Jouvenet N, Manuguerra JC, Pineau P, , ddPCR increases detection of SARS-CoV-2 RNA in patients with low viral loads., Arch Virol 2021 Sep; 166(9): 2529-2540.
• 2021
  Tahir D, Asri B, Meyer LN, Evans A, Mather T, Blagburn B, Straubinger RK, Choumet V, Jongejan F, Varloud M, , Vectra 3D (dinotefuran, pyriproxyfen and permethrin) prevents acquisition of Borrelia burgdorferi sensu stricto by Ixodes ricinus and Ixodes scapularis ticks in an ex vivo feeding model., Parasit Vectors 2021 Aug; 14(1): 416.
• 2021
  Fares W, Chouikha A, Ghedira K, Gdoura M, Rezig D, Boubaker SH, Dhifallah IB, Touzi H, Hammami W, Meddeb Z, Sadraoui A, Hogga N, Abouda I, Kwasiborski A, Hourdel V, Mikaty G, Caro V, Manuguerra JC, Alaya NB, Triki H, Whole genome sequencing and phylogenetic analysis of six SARS-CoV-2 strains isolated during COVID-19 pandemic in Tunisia, North Africa., BMC Genomics 2021 Jul; 22(1): 540.
• 2021
  Batéjat C, Grassin Q, Manuguerra JC, Leclercq I, , Heat inactivation of the severe acute respiratory syndrome coronavirus 2., J Biosaf Biosecur 2021 Jun; 3(1): 1-3.
• 2021
  Rezelj VV, Carrau L, Merwaiss F, Levi LI, Erazo D, Tran QD, Henrion-Lacritick A, Gausson V, Suzuki Y, Shengjuler D, Meyer B, Vallet T, Weger-Lucarelli J, Bernhauerová V, Titievsky A, Sharov V, Pietropaoli S, Diaz-Salinas MA, Legros V, Pardigon N, Barba-Spaeth G, Brodsky L, Saleh MC, Vignuzzi M, , Defective viral genomes as therapeutic interfering particles against flavivirus infection in mammalian and mosquito hosts., Nat Commun 2021 Apr; 12(1): 2290.
• 2021
  Vanhomwegen J, Kwasiborski A, Diop A, Boizeau L, Hoinard D, Vray M, Bercion R, Ndiaye B, Dublineau A, Michiyuki S, Manuguerra JC, Sauvage V, Candotti D, Seck A, Laperche S, Shimakawa Y, , Development and clinical validation of loop-mediated isothermal amplification (LAMP) assay to diagnose high HBV DNA levels in resource-limited settings., Clin Microbiol Infect 2021 Dec; 27(12): 1858.e9-1858.e15.
• 2021
  Feghali R, Merhi G, Kwasiborski A, Hourdel V, Ghosn N, Tokajian S, Genomic characterization and phylogenetic analysis of the first SARS-CoV-2 variants introduced in Lebanon., PeerJ 2021 ; 9(): e11015.
• 2021
  Labadie T, Grassin Q, Batéjat C, Manuguerra JC, Leclercq I, , Monitoring Influenza Virus Survival Outside the Host Using Real-Time Cell Analysis., J Vis Exp 2021 02; (168): .
• 2021
  Borie R, Caro V, Nunes H, Kambouchner M, Cazes A, Antoine M, Crestani B, Leroy K, Copie-Bergman C, Kwasiborski A, Hennequin C, Vandenbogaert M, Hourdel V, Cadranel J, No evidence for a pathogen associated with pulmonary MALT lymphoma: a metagenomics investigation., Infect Agent Cancer 2021 Feb; 16(1): 10.
• 2021
  Raphaël Borie, Valérie Caro, Hilario Nunes, Marianne Kambouchner, Aurélie Cazes, Martine Antoine, Bruno Crestani, Karen Leroy, Christiane Copie-Bergman, Aurelia Kwasiborski, Christophe Hennequin, Mathias Vandenbogaert, Véronique Hourdel, Jacques Cadranel, No evidence for a pathogen associated with pulmonary MALT lymphoma: a metagenomics investigation, Infectious Agents and Cancer, 2021, 16 (1), ⟨10.1186/s13027-021-00351-w⟩.
• 2021
  Pierre Garneret,Etienne Coz, Elian Martin, Jean-Claude Manuguerra, Elodie Brient-Litzler, Vincent Enouf, Daniel Felipe González Obando, Jean-Christophe Olivo-Marin, Fabrice Monti, Sylvie van der Werf, Jessica Vanhomwegen, Patrick Tabeling, Performing point-of-care molecular testing for SARS-CoV-2 with RNA extraction and isothermal amplification, PLOS ONE, 16(1), e0243712 - January 2021.
• 2020
  Sailleau C, Dumarest M, Vanhomwegen J, Delaplace M, Caro V, Kwasiborski A, Hourdel V, Chevaillier P, Barbarino A, Comtet L, Pourquier P, Klonjkowski B, Manuguerra JC, Zientara S, Le Poder S, First detection and genome sequencing of SARS-CoV-2 in an infected cat in France., Transbound Emerg Dis 2020 Nov; 67(6): 2324-2328.
• 2020
  Serris A, Stass R, Bignon EA, Muena NA, Manuguerra JC, Jangra RK, Li S, Chandran K, Tischler ND, Huiskonen JT, Rey FA, Guardado-Calvo P, , The Hantavirus Surface Glycoprotein Lattice and Its Fusion Control Mechanism., Cell 2020 Oct; 183(2): 442-456.e16.
• 2020
  Guillier L, Martin-Latil S, Chaix E, Thébault A, Pavio N, Le Poder S, Batéjat C, Biot F, Koch L, Schaffner DW, Sanaa M, , , Modeling the Inactivation of Viruses from the Coronaviridae Family in Response to Temperature and Relative Humidity in Suspensions or on Surfaces., Appl Environ Microbiol 2020 09; 86(18): .
• 2020
  Pierre Garneret, Etienne Coz, Elian Martin, Jean-Claude Manuguerra, Elodie Brient-Litzler, Vincent Enouf, Daniel Felipe Gonzalez Obando, Jean-Christophe Olivo-Marin, Fabrice Monti, Sylvie Van der Werf, Jessica Vanhomwegen, Patrick Jean Tabeling, Highly performing point-of-care molecular testing for SARS-CoV-2 with RNA extraction and isothermal amplification., medRxiv 2020.08.01.20166538.
• 2020
  Chang YY, Stévenin V, Duchateau M, Giai Gianetto Q, Hourdel V, Rodrigues CD, Matondo M, Reiling N, Enninga J, Shigella hijacks the exocyst to cluster macropinosomes for efficient vacuolar escape., PLoS Pathog 2020 Aug; 16(8): e1008822.
• 2020
  Legros V, Jeannin P, Burlaud-Gaillard J, Chaze T, Gianetto QG, Butler-Browne G, Mouly V, Zoladek J, Afonso PV, Gonzàlez MN, Matondo M, Riederer I, Roingeard P, Gessain A, Choumet V, Ceccaldi PE, , Differentiation-dependent susceptibility of human muscle cells to Zika virus infection., PLoS Negl Trop Dis 2020 08; 14(8): e0008282.
• 2020
  Filippone C, Legros V, Jeannin P, Choumet V, Butler-Browne G, Zoladek J, Mouly V, Gessain A, Ceccaldi PE, , Arboviruses and Muscle Disorders: From Disease to Cell Biology., Viruses 2020 06; 12(6): .
• 2020
  Pérot P, Falguieres M, Arowas L, Laude H, Foy JP, Goudot P, Corre-Catelin N, Ungeheuer MN, Caro V, Heard I, Eloit M, Gessain A, Bertolus C, Berthet N, Investigation of viral etiology in potentially malignant disorders and oral squamous cell carcinomas in non-smoking, non-drinking patients, PLoS ONE 2020;15(4):e0232138.
• 2020
  O'Brien DP, Hourdel V, Chenal A, Brier S, Hydrogen/Deuterium Exchange Mass Spectrometry for the Structural Analysis of Detergent-Solubilized Membrane Proteins., Methods Mol Biol 2020 ; 2127(): 339-358.
• 2020
  Besson B, Basset J, Gatellier S, Chabrolles H, Chaze T, Hourdel V, Matondo M, Pardigon N, Choumet V, Comparison of a human neuronal model proteome upon Japanese encephalitis or West Nile Virus infection and potential role of mosquito saliva in neuropathogenesis., PLoS One 2020 ; 15(5): e0232585.
• 2020
  Labadie T, Batéjat C, Leclercq I, Manuguerra JC, , Historical Discoveries on Viruses in the Environment and Their Impact on Public Health., Intervirology 2020 ; 63(1-6): 17-32.
• 2020
  Hourdel V, Kwasiborski A, Balière C, Matheus S, Batéjat CF, Manuguerra JC, Vanhomwegen J, Caro V, Rapid Genomic Characterization of SARS-CoV-2 by Direct Amplicon-Based Sequencing Through Comparison of MinION and Illumina iSeq100TM System., Front Microbiol 2020 ; 11(): 571328.
• 2019
  Hommel B, Sturny-Leclère A, Volant S, Veluppillai N, Duchateau M, Yu CH, Hourdel V, Varet H, Matondo M, Perfect JR, Casadevall A, Dromer F, Alanio A, Correction: Cryptococcus neoformans resists to drastic conditions by switching to viable but non-culturable cell phenotype., PLoS Pathog 2019 Sep; 15(9): e1008070.
• 2019
  Hommel B, Sturny-Leclère A, Volant S, Veluppillai N, Duchateau M, Yu CH, Hourdel V, Varet H, Matondo M, Perfect JR, Casadevall A, Dromer F, Alanio A, Cryptococcus neoformans resists to drastic conditions by switching to viable but non-culturable cell phenotype., PLoS Pathog 2019 Jul; 15(7): e1007945.
• 2019
  Sadeuh-Mba SA, Yonga MG, Els M, Batejat C, Eyangoh S, Caro V, Etoundi A, Carniel E, Njouom R, , Monkeypox virus phylogenetic similarities between a human case detected in Cameroon in 2018 and the 2017-2018 outbreak in Nigeria., Infect Genet Evol 2019 04; 69(): 8-11.
• 2019
  Obam Mekanda FM, Monamele CG, Simo Nemg FB, Yonga GM, Ouapi D, Penlap Beng V, Batéjat C, Caro V, Manuguerra JC, Demanou M, , Molecular characterization of measles virus strains circulating in Cameroon during the 2013-2016 epidemics., PLoS One 2019 ; 14(9): e0222428.
• 2018
  Voegele A, O'Brien DP, Subrini O, Sapay N, Cannella SE, Enguéné VYN, Hessel A, Karst J, Hourdel V, Perez ACS, Davi M, Veneziano R, Chopineau J, Vachette P, Durand D, Brier S, Ladant D, Chenal A, Translocation and calmodulin-activation of the adenylate cyclase toxin (CyaA) of Bordetella pertussis., Pathog Dis 2018 Nov; 76(8): .
• 2018
  Pomar L, Vouga M, Lambert V, Pomar C, Hcini N, Jolivet A, Benoist G, Rousset D, Matheus S, Malinger G, Panchaud A, Carles G, Baud D, Maternal-fetal transmission and adverse perinatal outcomes in pregnant women infected with Zika virus: prospective cohort study in French Guiana, BMJ 2018 Oct;363:k4431.
• 2018
  Weidmann M, Faye O, Faye O, Abd El Wahed A, Patel P, Batejat C, Manugerra JC, Adjami A, Niedrig M, Hufert FT, Sall AA, , Development of Mobile Laboratory for Viral Hemorrhagic Fever Detection in Africa., J Infect Dis 2018 10; 218(10): 1622-1630.
• 2018
  Basurko C, Everhard S, Matheus S, Restrepo M, Hildéral H, Lambert V, Boukhari R, Duvernois JP, Favre A, Valmy L, Nacher M, Carles G, A prospective matched study on symptomatic dengue in pregnancy, PLoS ONE 2018;13(10):e0202005.
• 2018
  Fontaine A, de Laval F, Belleoud D, Briolant S, Matheus S, Duration of Zika Viremia in Serum, Clin. Infect. Dis. 2018 Sep;67(7):1143-1144.
• 2018
  Sauvage V, Gomez J, Barray A, Vandenbogaert M, Boizeau L, Tagny CT, Rakoto O, Bizimana P, Guitteye H, Ciré BB, Soumana H, Tchomba JS, Caro V, Laperche S, High prevalence of cyclovirus Vietnam (CyCV-VN) in plasma samples from Madagascan healthy blood donors, Infect. Genet. Evol. 2018 12;66:9-12.
• 2018
  Matheus S, Kallel H, Roux A, Bremand L, Labeau B, Moua D, Rousset D, Donato D, Lacoste V, Houcke S, Mayence C, de Thoisy B, Hommel D, Lavergne A, Maripa Virus RNA Load and Antibody Response in Hantavirus Pulmonary Syndrome, French Guiana, Emerging Infect. Dis. 2018 09;24(9):1734-1736.
• 2018
  Gaidet N, Leclercq I, Batéjat C, Grassin Q, Daufresne T, Manuguerra JC, , Avian Influenza Virus Surveillance in High Arctic Breeding Geese, Greenland., Avian Dis 2018 06; 62(2): 237-240.
• 2018
  Basurko C, Matheus S, Hildéral H, Everhard S, Restrepo M, Cuadro-Alvarez E, Lambert V, Boukhari R, Duvernois JP, Favre A, Nacher M, Carles G, Estimating the Risk of Vertical Transmission of Dengue: A Prospective Study, Am. J. Trop. Med. Hyg. 2018 Jun;98(6):1826-1832.
• 2018
  da Costa A, Prehaud C, Khou C, Pardigon N, Saulnier A, Nougarede N, Lafon M, Innovative in cellulo method as an alternative to in vivo neurovirulence test for the characterization and quality control of human live Yellow Fever virus vaccines: A pilot study, Biologicals 2018 May;53:19-29.
• 2018
  Sauvage V, Boizeau L, Candotti D, Vandenbogaert M, Servant-Delmas A, Caro V, Laperche S, Early MinION™ nanopore single-molecule sequencing technology enables the characterization of hepatitis B virus genetic complexity in clinical samples, PLoS ONE 2018;13(3):e0194366.
• 2018
  O'Brien DP, Perez ACS, Karst J, Cannella SE, Enguéné VYN, Hessel A, Raoux-Barbot D, Voegele A, Subrini O, Davi M, Guijarro JI, Raynal B, Baron B, England P, Hernandez B, Ghomi M, Hourdel V, Malosse C, Chamot-Rooke J, Vachette P, Durand D, Brier S, Ladant D, Chenal A, Calcium-dependent disorder-to-order transitions are central to the secretion and folding of the CyaA toxin of Bordetella pertussis, the causative agent of whooping cough., Toxicon 2018 Jul; 149(): 37-44.
• 2018
  Labadie T, Batéjat C, Manuguerra JC, Leclercq I, , Influenza Virus Segment Composition Influences Viral Stability in the Environment., Front Microbiol 2018 ; 9(): 1496.
• 2017
  Dupont-Rouzeyrol M, Diancourt L, Calvez E, Vandenbogaert M, O'Connor O, Teissier A, Pol M, Aubry M, Faye O, Tou D, Cao-Lormeau VM, Caro V, Zika virus evolution on the edges of the Pacific ocean, Emerg Microbes Infect 2017 12;6(12):e111.
• 2017
  Matheus S, de Laval F, Moua D, N'Guyen C, Martinez E, Rousset D, Briolant S, Zika Virus Persistence and Higher Viral Loads in Cutaneous Capillaries Than in Venous Blood, Emerging Infect. Dis. 2017 11;23(11).
• 2017
  Flamand C, Fritzell C, Matheus S, Dueymes M, Carles G, Favre A, Enfissi A, Adde A, Demar M, Kazanji M, Cauchemez S, Rousset D, , The proportion of asymptomatic infections and spectrum of disease among pregnant women infected by Zika virus: systematic monitoring in French Guiana, 2016., Euro Surveill 2017 Nov; 22(44): .
• 2017
  Khou C, Pardigon N, Identifying Attenuating Mutations: Tools for a New Vaccine Design against Flaviviruses, Intervirology 2017;60:8-18.
• 2017
  Besson B, Sonthonnax F, Duchateau M, Ben Khalifa Y, Larrous F, Eun H, Hourdel V, Matondo M, Chamot-Rooke J, Grailhe R, Bourhy H, Regulation of NF-κB by the p105-ABIN2-TPL2 complex and RelAp43 during rabies virus infection., PLoS Pathog 2017 Oct; 13(10): e1006697.
• 2017
  Matheus S, Kallel H, Mayence C, Bremand L, Houcke S, Rousset D, Lacoste V, de Thoisy B, Hommel D, Lavergne A, Hantavirus Pulmonary Syndrome Caused by Maripa Virus in French Guiana, 2008-2016, Emerging Infect. Dis. 2017 10;23(10):1722-1725.
• 2017
  Simonnet C, Okandze A, Matheus S, Djossou F, Nacher M, Mahamat A, Prospective evaluation of the SD BIOLINE Dengue Duo rapid test during a dengue virus epidemic, Eur. J. Clin. Microbiol. Infect. Dis. 2017 Dec;36(12):2441-2447.
• 2017
  de Laval F, Matheus S, Labrousse T, Enfissi A, Rousset D, Briolant S, Kinetics of Zika Viral Load in Semen, N. Engl. J. Med. 2017 08;377(7):697-699.
• 2017
  Le Coupanec A, Tchankouo-Nguetcheu S, Roux P, Khun H, Huerre M, Morales-Vargas R, Enguehard M, Lavillette D, Missé D, Choumet V, , Co-Infection of Mosquitoes with Chikungunya and Dengue Viruses Reveals Modulation of the Replication of Both Viruses in Midguts and Salivary Glands of Aedes aegypti Mosquitoes., Int J Mol Sci 2017 Aug; 18(8): .
• 2017
  Poppleton DI, Duchateau M, Hourdel V, Matondo M, Flechsler J, Klingl A, Beloin C, Gribaldo S, Outer Membrane Proteome of Veillonella parvula: A Diderm Firmicute of the Human Microbiome., Front Microbiol 2017 ; 8(): 1215.
• 2017
  Pardigon N, Pathophysiological mechanisms of Flavivirus infection of the central nervous system, Transfus Clin Biol 2017 Sep;24(3):96-100.
• 2017
  Le Flèche-Matéos A, Kügler JH, Hansen SH, Syldatk C, Hausmann R, Lomprez F, Vandenbogaert M, Manuguerra JC, Grimont PAD, Rouxiella badensis sp. nov. and Rouxiella silvae sp. nov. isolated from peat bog soil and emendation description of the genus Rouxiella, Int. J. Syst. Evol. Microbiol. 2017 May;67(5):1255-1259.
• 2017
  Flamand C, Fritzell C, Prince C, Abboud P, Ardillon V, Carvalho L, Demar M, Boukhari R, Papaix-Puech M, Elenga N, Rousset D, Matheus S, Nacher M, Quenel P, Djossou F, Epidemiological assessment of the severity of dengue epidemics in French Guiana, PLoS ONE 2017;12(2):e0172267.
• 2017
  Guilvout I, Brier S, Chami M, Hourdel V, Francetic O, Pugsley AP, Chamot-Rooke J, Huysmans GH, Prepore Stability Controls Productive Folding of the BAM-independent Multimeric Outer Membrane Secretin PulD., J Biol Chem 2017 Jan; 292(1): 328-338.
• 2017
  O'Brien DP, Durand D, Voegele A, Hourdel V, Davi M, Chamot-Rooke J, Vachette P, Brier S, Ladant D, Chenal A, Calmodulin fishing with a structurally disordered bait triggers CyaA catalysis., PLoS Biol 2017 Dec; 15(12): e2004486.
• 2016
  Damien Correia , Olivia Doppelt-Azeroual , Jean-Baptiste Denis , Mathias Vandenbogaert , Valérie Caro, MetaGenSense: A web-application for analysis and exploration of high throughput sequencing metagenomic data, Correia D, Doppelt-Azeroual O, Denis JB et al. MetaGenSense: A web-application for analysis and exploration of high throughput sequencing metagenomic data. F1000Research 2016, 4:86 (doi: 10.12688/f1000research.6139.3) .
• 2016
  Matheus S, Boukhari R, Labeau B, Ernault V, Bremand L, Kazanji M, Rousset D, Specificity of Dengue NS1 Antigen in Differential Diagnosis of Dengue and Zika Virus Infection, Emerging Infect. Dis. 2016 09;22(9):1691-3.
• 2016
  Krejbich-Trotot P, Belarbi E, Ralambondrainy M, El-Kalamouni C, Viranaicken W, Roques P, Desprès P, Gadea G, The growth of arthralgic Ross River virus is restricted in human monocytic cells, Virus Res. 2016 Oct;225:64-68.
• 2016
  de Laval F, Matheus S, Maquart M, Yvrard E, Barthes N, Combes C, Rousset D, Leparc-Goffart I, Briolant S, Prospective Zika virus disease cohort: systematic screening, Lancet 2016 Aug;388(10047):868.
• 2016
  Brault JB, Khou C, Basset J, Coquand L, Fraisier V, Frenkiel MP, Goud B, Manuguerra JC, Pardigon N, Baffet AD, Comparative Analysis Between Flaviviruses Reveals Specific Neural Stem Cell Tropism for Zika Virus in the Mouse Developing Neocortex, EBioMedicine. 2016 Jul 16. pii: S2352-3964(16)30323-1..
• 2016
  Daudens-Vaysse E, Ledrans M, Gay N, Ardillon V, Cassadou S, Najioullah F, Leparc-Goffart I, Rousset D, Herrmann C, Cesaire R, Maquart M, Flusin O, Matheus S, Huc-Anaïs P, Jaubert J, Criquet-Hayot A, Hoen B, Djossou F, Locatelli-Jouans C, Blateau A, McKenzie AM, Melin M, Saint-Martin P, Dorléans F, Suivant C, Carvalho L, Petit-Sinturel M, Andrieu A, Noël H, Septfons A, Gallay A, Paty MC, Filleul L, Cabié A, , Zika emergence in the French Territories of America and description of first confirmed cases of Zika virus infection on Martinique, November 2015 to February 2016, Euro Surveill. 2016 Jul;21(28).
• 2016
  Hourdel V, Volant S, O'Brien DP, Chenal A, Chamot-Rooke J, Dillies MA, Brier S, MEMHDX: an interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets., Bioinformatics 2016 Nov; 32(22): 3413-3419.
• 2016
  Khaled Alsaleh, Cécile Khou, Marie-Pascale Frenkiel, Sylvie Lecollinet, Ana Vàsquez, Eva Ramirez de Arellano, Philippe Desprès, Nathalie Pardigon, The E glycoprotein plays an essential role in the high pathogenicity of European-Mediterranean IS98 strain of West Nile virus., Virology. 2016 May;492:53-65. doi: 10.1016/j.virol.2016.02.009. Epub 2016 Feb 19..
• 2016
  Cao-Lormeau VM, Blake A, Mons S, Lastère S, Roche C, Vanhomwegen J, Dub T, Baudouin L, Teissier A, Larre P, Vial AL, Decam C, Choumet V, Halstead SK, Willison HJ, Musset L, Manuguerra JC, Despres P, Fournier E, Mallet HP, Musso D, Fontanet A, Neil J, Ghawché F, , Guillain-Barré Syndrome outbreak associated with Zika virus infection in French Polynesia: a case-control study., Lancet 2016 Apr; 387(10027): 1531-1539.
• 2016
  Djossou F, Vesin G, Bidaud B, Mosnier E, Simonnet C, Matheus S, Prince C, Balcaen J, Donutil G, Egmann G, Okandze A, Malvy D, Nacher M, Incidence and Predictive Factors of Central Nervous System Dysfunction in Patients Consulting for Dengue Fever in Cayenne Hospital, French Guiana, PLoS ONE 2016;11(3):e0150828.
• 2016
  Stapleford KA, Moratorio G, Henningsson R, Chen R, Matheus S, Enfissi A, Weissglas-Volkov D, Isakov O, Blanc H, Mounce BC, Dupont-Rouzeyrol M, Shomron N, Weaver S, Fontes M, Rousset D, Vignuzzi M, Whole-Genome Sequencing Analysis from the Chikungunya Virus Caribbean Outbreak Reveals Novel Evolutionary Genomic Elements, PLoS Negl Trop Dis 2016 Jan;10(1):e0004402.
• 2015
  Mélissanne de Wispelaere, Cécile Khou, Marie-Pascale Frenkiel, Philippe Desprès, Nathalie Pardigon, A Single Amino Acid Substitution in the M Protein Attenuates Japanese Encephalitis Virus in Mammalian Hosts., J Virol. 2015 Dec 9;90(5):2676-89. doi: 10.1128/JVI.01176-15..
• 2015
  Gay N, Rousset D, Huc P, Matheus S, Ledrans M, Rosine J, Cassadou S, Noël H, Seroprevalence of Asian Lineage Chikungunya Virus Infection on Saint Martin Island, 7 Months After the 2013 Emergence, Am. J. Trop. Med. Hyg. 2016 Feb;94(2):393-6.
• 2015
  Santos JC, Duchateau M, Fredlund J, Weiner A, Mallet A, Schmitt C, Matondo M, Hourdel V, Chamot-Rooke J, Enninga J, The COPII complex and lysosomal VAMP7 determine intracellular Salmonella localization and growth., Cell Microbiol 2015 Dec; 17(12): 1699-720.
• 2015
  Gardner J, Rudd PA, Prow NA, Belarbi E, Roques P, Larcher T, Gresh L, Balmaseda A, Harris E, Schroder WA, Suhrbier A, Infectious Chikungunya Virus in the Saliva of Mice, Monkeys and Humans, PLoS ONE 2015;10(10):e0139481.
• 2015
  O'Brien DP, Hernandez B, Durand D, Hourdel V, Sotomayor-Pérez AC, Vachette P, Ghomi M, Chamot-Rooke J, Ladant D, Brier S, Chenal A, Structural models of intrinsically disordered and calcium-bound folded states of a protein adapted for secretion., Sci Rep 2015 Sep; 5(): 14223.
• 2015
  Hamel R, Dejarnac O, Wichit S, Ekchariyawat P, Neyret A, Luplertlop N, Perera-Lecoin M, Surasombatpattana P, Talignani L, Thomas F, Cao-Lormeau VM, Choumet V, Briant L, Desprès P, Amara A, Yssel H, Missé D, Biology of Zika Virus Infection in Human Skin Cells, J. Virol. 2015 Sep;89(17):8880-96.
• 2015
  Matheus S, Huc P, Labeau B, Bremand L, Enfissi A, Merle O, Flusin O, Rousset D, Leparc-Goffart I, The use of serum spotted onto filter paper for diagnosing and monitoring Chikungunya virus infection, J. Clin. Virol. 2015 Oct;71:89-92.
• 2015
  Choumet V, Desprès P, Dengue and other flavivirus infections, Rev. - Off. Int. Epizoot. 2015 Aug;34(2):473-8, 467-72.
• 2015
  Simon-Loriere E, Faye O, Faye O, Koivogui L, Magassouba N, Keita S, Thiberge JM, Diancourt L, Bouchier C, Vandenbogaert M, Caro V, Fall G, Buchmann JP, Matranga CB, Sabeti PC, Manuguerra JC, Holmes EC, Sall AA, Distinct lineages of Ebola virus in Guinea during the 2014 West African epidemic, Nature 2015 Aug;524(7563):102-4.
• 2015
  Desdouits M, Kamgang B, Berthet N, Tricou V, Ngoagouni C, Gessain A, Manuguerra JC, Nakouné E, Kazanji M, Genetic characterization of Chikungunya virus in the Central African Republic, Infect. Genet. Evol. 2015 Jul;33:25-31.
• 2015
  Ekchariyawat P, Hamel R, Bernard E, Wichit S, Surasombatpattana P, Talignani L, Thomas F, Choumet V, Yssel H, Desprès P, Briant L, Missé D, Inflammasome signaling pathways exert antiviral effect against Chikungunya virus in human dermal fibroblasts, Infect. Genet. Evol. 2015 Jun;32:401-8.
• 2015
  Sarah Bonnet, Valérie Choumet, Sébastien Masseglia, Martine Cote, Elisabeth Ferquel, Thomas Lilin, Maud Marsot, Jean-Louis Chapuis, Gwenaël Vourc’h, Infection of Siberian chipmunks (Tamias sibiricus barberi) with Borrelia sp. reveals a low reservoir competence under experimental conditions., Ticks and Tick-borne Diseases, 2015, 6 (3), pp.393-400. ⟨10.1016/j.ttbdis.2015.03.008⟩.
• 2015
  De Decker S, Vray M, Sistek V, Labeau B, Enfissi A, Rousset D, Matheus S, Evaluation of the diagnostic accuracy of a new dengue IgA capture assay (Platelia Dengue IgA Capture, Bio-Rad) for dengue infection detection, PLoS Negl Trop Dis 2015 Mar;9(3):e0003596.
• 2015
  Le Flèche-Matéos A, Levast M, Lomprez F, Arnoux Y, Andonian C, Perraud M, Vincent V, Ar Gouilh M, Thiberge JM, Vandenbogaert M, Diancourt L, Caro V, Burguière AM, Manuguerra JC, Rouxiella chamberiensis gen. nov., sp. nov., a member of the family Enterobacteriaceae isolated from parenteral nutrition bags, Int. J. Syst. Evol. Microbiol. 2015 Jun;65(Pt 6):1812-8.
• 2014
  Lao M, Caro V, Thiberge JM, Bounmany P, Vongpayloth K, Buchy P, Duong V, Vanhlasy C, Hospied JM, Thongsna M, Choumlivong K, Vongkhamchanh P, Oudavong B, Brey PT, Grandadam M, Co-circulation of dengue virus type 3 genotypes in Vientiane capital, Lao PDR, PLoS ONE 2014;9(12):e115569.
• 2014
  Jeannot K, Diancourt L, Vaux S, Thouverez M, Ribeiro A, Coignard B, Courvalin P, Brisse S, Molecular epidemiology of carbapenem non-susceptible Acinetobacter baumannii in France, PLoS ONE 2014;9(12):e115452.
• 2014
  Vaux S, Criscuolo A, Desnos-Ollivier M, Diancourt L, Tarnaud C, Vandenbogaert M, Brisse S, Coignard B, Dromer F, , , Multicenter outbreak of infections by Saprochaete clavata, an unrecognized opportunistic fungal pathogen., mBio 2014 Dec; 5(6): .
• 2014
  Berthet N, Nakouné E, Kamgang B, Selekon B, Descorps-Declère S, Gessain A, Manuguerra JC, Kazanji M, Molecular characterization of three Zika flaviviruses obtained from sylvatic mosquitoes in the Central African Republic, Vector Borne Zoonotic Dis. 2014 Dec;14(12):862-5.
• 2014
  Hans A, Gaudaire D, Manuguerra JC, Leon A, Gessain A, Laugier C, Berthet N, Zientara S, Combination of an unbiased amplification method and a resequencing microarray for detecting and genotyping equine arteritis virus, J. Clin. Microbiol. 2015 Jan;53(1):287-91.
• 2014
  Maganga GD, Kapetshi J, Berthet N, Kebela Ilunga B, Kabange F, Mbala Kingebeni P, Mondonge V, Muyembe JJ, Bertherat E, Briand S, Cabore J, Epelboin A, Formenty P, Kobinger G, González-Angulo L, Labouba I, Manuguerra JC, Okwo-Bele JM, Dye C, Leroy EM, Ebola virus disease in the Democratic Republic of Congo, N. Engl. J. Med. 2014 Nov;371(22):2083-91.
• 2014
  Zouache K, Fontaine A, Vega-Rua A, Mousson L, Thiberge JM, Lourenco-De-Oliveira R, Caro V, Lambrechts L, Failloux AB, Three-way interactions between mosquito population, viral strain and temperature underlying chikungunya virus transmission potential, Proc. Biol. Sci. 2014 Oct;281(1792).
• 2014
  Gueule D, Fourny G, Ageron E, Le Flèche-Matéos A, Vandenbogaert M, Grimont PA, Cilas C, Pantoea coffeiphila sp. nov., cause of the ‘potato taste’ of Arabica coffee from the African Great Lakes region, Int. J. Syst. Evol. Microbiol. 2015 Jan;65(Pt 1):23-9.
• 2014
  Lavergne A, de Thoisy B, Donato D, Guidez A, Matheus S, Catzeflis F, Lacoste V, Patawa Virus, a New Arenavirus Hosted by Forest Rodents in French Guiana, Ecohealth 2015 Jun;12(2):339-46.
• 2014
  Sawoo O, Dublineau A, Batéjat C, Zhou P, Manuguerra JC, Leclercq I, , Cleavage of hemagglutinin-bearing lentiviral pseudotypes and their use in the study of influenza virus persistence., PLoS One 2014 ; 9(8): e106192.
• 2014
  Vandenesch A, Turbelin C, Couturier E, Arena C, Jaulhac B, Ferquel E, Choumet V, Saugeon C, Coffinieres E, Blanchon T, Vaillant V, Hanslik T, Incidence and hospitalisation rates of Lyme borreliosis, France, 2004 to 2012, Euro Surveill. 2014 Aug;19(34).
• 2014
  Leclercq I, Batéjat C, Burguière AM, Manuguerra JC, , Heat inactivation of the Middle East respiratory syndrome coronavirus., Influenza Other Respir Viruses 2014 Sep; 8(5): 585-6.
• 2014
  Briant L, Desprès P, Choumet V, Missé D, Role of skin immune cells on the host susceptibility to mosquito-borne viruses, Virology 2014 Sep;464-465:26-32.
• 2014
  de Thoisy B, Matheus S, Catzeflis F, Clément L, Barrioz S, Guidez A, Donato D, Cornu JF, Brunaux O, Guitet S, Lacoste V, Lavergne A, Maripa hantavirus in French Guiana: phylogenetic position and predicted spatial distribution of rodent hosts, Am. J. Trop. Med. Hyg. 2014 Jun;90(6):988-92.
• 2014
  Baize S, Pannetier D, Oestereich L, Rieger T, Koivogui L, Magassouba N, Soropogui B, Sow MS, Keïta S, De Clerck H, Tiffany A, Dominguez G, Loua M, Traoré A, Kolié M, Malano ER, Heleze E, Bocquin A, Mély S, Raoul H, Caro V, Cadar D, Gabriel M, Pahlmann M, Tappe D, Schmidt-Chanasit J, Impouma B, Diallo AK, Formenty P, Van Herp M, Günther S, Emergence of Zaire Ebola virus disease in Guinea, N. Engl. J. Med. 2014 Oct;371(15):1418-25.
• 2014
  Van Bortel W, Dorleans F, Rosine J, Blateau A, Rousset D, Matheus S, Leparc-Goffart I, Flusin O, Prat C, Cesaire R, Najioullah F, Ardillon V, Balleydier E, Carvalho L, Lemaître A, Noel H, Servas V, Six C, Zurbaran M, Leon L, Guinard A, van den Kerkhof J, Henry M, Fanoy E, Braks M, Reimerink J, Swaan C, Georges R, Brooks L, Freedman J, Sudre B, Zeller H, Chikungunya outbreak in the Caribbean region, December 2013 to March 2014, and the significance for Europe, Euro Surveill. 2014 Apr;19(13).
• 2014
  Arias-Goeta C, Moutailler S, Mousson L, Zouache K, Thiberge JM, Caro V, Rougeon F, Failloux AB, Chikungunya virus adaptation to a mosquito vector correlates with only few point mutations in the viral envelope glycoprotein, Infect. Genet. Evol. 2014 Jun;24:116-26.
• 2014
  Dacheux L, Cervantes-Gonzalez M, Guigon G, Thiberge JM, Vandenbogaert M, Maufrais C, Caro V, Bourhy H, A preliminary study of viral metagenomics of French bat species in contact with humans: identification of new mammalian viruses, PLoS ONE 2014;9(1):e87194.
• 2014
  Matheus S, Pham TB, Labeau B, Huong VT, Lacoste V, Deparis X, Marechal V, Kinetics of dengue non-structural protein 1 antigen and IgM and IgA antibodies in capillary blood samples from confirmed dengue patients, Am. J. Trop. Med. Hyg. 2014 Mar;90(3):438-43.
• 2013
  Chenau J, Fenaille F, Caro V, Haustant M, Diancourt L, Klee SR, Junot C, Ezan E, Goossens PL, Becher F, Identification and validation of specific markers of Bacillus anthracis spores by proteomics and genomics approaches, Mol. Cell Proteomics 2014 Mar;13(3):716-32.
• 2013
  Cantinelli T, Chenal-Francisque V, Diancourt L, Frezal L, Leclercq A, Wirth T, Lecuit M, Brisse S, “Epidemic clones” of Listeria monocytogenes are widespread and ancient clonal groups., J Clin Microbiol 2013 Nov; 51(11): 3770-9.
• 2013
  Lemaître C, Mahjoub-Messai F, Dupont D, Caro V, Diancourt L, Bingen E, Bidet P, Bonacorsi S, A conserved virulence plasmidic region contributes to the virulence of the multiresistant Escherichia coli meningitis strain S286 belonging to phylogenetic group C, PLoS ONE 2013;8(9):e74423.
• 2013
  Shigematsu S, Dublineau A, Sawoo O, Batéjat C, Matsuyama T, Leclercq I, Manuguerra JC, , Influenza A virus survival in water is influenced by the origin species of the host cell., Influenza Other Respir Viruses 2014 Jan; 8(1): 123-30.
• 2013
  Fansiri T, Fontaine A, Diancourt L, Caro V, Thaisomboonsuk B, Richardson JH, Jarman RG, Ponlawat A, Lambrechts L, Genetic mapping of specific interactions between Aedes aegypti mosquitoes and dengue viruses, PLoS Genet. 2013;9(8):e1003621.
• 2013
  Angebault C, Djossou F, Abélanet S, Permal E, Ben Soltana M, Diancourt L, Bouchier C, Woerther PL, Catzeflis F, Andremont A, d'Enfert C, Bougnoux ME, Candida albicans is not always the preferential yeast colonizing humans: a study in Wayampi Amerindians, J. Infect. Dis. 2013 Nov;208(10):1705-16.
• 2013
  Vanhomwegen J, Berthet N, Mazuet C, Guigon G, Vallaeys T, Stamboliyska R, Dubois P, Kennedy GC, Cole ST, Caro V, Manuguerra JC, Popoff MR, Application of high-density DNA resequencing microarray for detection and characterization of botulinum neurotoxin-producing clostridia, PLoS ONE 2013;8(6):e67510.
• 2013
  El Baidouri F, Diancourt L, Berry V, Chevenet F, Pratlong F, Marty P, Ravel C, Genetic structure and evolution of the Leishmania genus in Africa and Eurasia: what does MLSA tell us, PLoS Negl Trop Dis 2013;7(6):e2255.
• 2013
  Chenal-Francisque V, Diancourt L, Cantinelli T, Passet V, Tran-Hykes C, Bracq-Dieye H, Leclercq A, Pourcel C, Lecuit M, Brisse S, , Optimized Multilocus variable-number tandem-repeat analysis assay and its complementarity with pulsed-field gel electrophoresis and multilocus sequence typing for Listeria monocytogenes clone identification and surveillance., J Clin Microbiol 2013 Jun; 51(6): 1868-80.
• 2013
  Guery B, Poissy J, el Mansouf L, Séjourné C, Ettahar N, Lemaire X, Vuotto F, Goffard A, Behillil S, Enouf V, Caro V, Mailles A, Che D, Manuguerra JC, Mathieu D, Fontanet A, van der Werf S, , Clinical features and viral diagnosis of two cases of infection with Middle East Respiratory Syndrome coronavirus: a report of nosocomial transmission, Lancet 2013 Jun;381(9885):2265-72.
• 2013
  Peyrefitte CN, Grandadam M, Bessaud M, Andry PE, Fouque F, Caro V, Diancourt L, Schuffenecker I, Pagès F, Tolou H, Zeller H, Depaquit J, Diversity of Phlebotomus perniciosus in Provence, southeastern France: Detection of two putative new phlebovirus sequences, Vector Borne Zoonotic Dis. 2013 Sep;13(9):630-6.
• 2013
  Mahamat A, Dussart P, Bouix A, Carvalho L, Eltges F, Matheus S, Miller MA, Quenel P, Viboud C, Climatic drivers of seasonal influenza epidemics in French Guiana, 2006-2010, J. Infect. 2013 Aug;67(2):141-7.
• 2013
  Vega-Rua A, Zouache K, Caro V, Diancourt L, Delaunay P, Grandadam M, Failloux AB, High efficiency of temperate Aedes albopictus to transmit chikungunya and dengue viruses in the Southeast of France, PLoS ONE 2013;8(3):e59716.
• 2012
  Mathias Vandenbogaert, Veronique Hourdel, Olivia Jardin-Mathé, Jean Bigeard, Ludovic Bonhomme, Véronique Legros, Heribert Hirt, Benno Schwikowski, Delphine Pflieger, Automated Phosphopeptide Identification Using Multiple MS/MS Fragmentation Modes, Journal of Proteome Research, 2012, 11 (12), pp.5695 - 5703. ⟨10.1021/pr300507j⟩.
• 2012
  Paireau J, Tuan NH, Lefrançois R, Buckwalter MR, Nghia ND, Hien NT, Lortholary O, Poirée S, Manuguerra JC, Gessain A, Albert ML, Brey PT, Nga PT, Fontanet A, Litchi-associated acute encephalitis in children, Northern Vietnam, 2004-2009, Emerging Infect. Dis. 2012 Nov;18(11):1817-24.
• 2012
  Le Flèche-Matéos A, Berthet N, Lomprez F, Arnoux Y, Le Guern AS, Leclercq I, Burguière AM, Manuguerra JC, Recurrent Breast Abscesses due to Corynebacterium kroppenstedtii, a Human Pathogen Uncommon in Caucasian Women, Case Rep Infect Dis 2012;2012:120968.
• 2012
  Henrik Gad H, Paulous S, Belarbi E, Diancourt L, Drosten C, Kümmerer BM, Plate AE, Caro V, Desprès P, The E2-E166K substitution restores Chikungunya virus growth in OAS3 expressing cells by acting on viral entry, Virology 2012 Dec;434(1):27-37.
• 2012
  Sauvage V, Ar Gouilh M, Cheval J, Muth E, Pariente K, Burguiere A, Caro V, Manuguerra JC, Eloit M, A member of a new Picornaviridae genus is shed in pig feces, J. Virol. 2012 Sep;86(18):10036-46.
• 2012
  Brisse S, Diancourt L, Laouénan C, Vigan M, Caro V, Arlet G, Drieux L, Leflon-Guibout V, Mentré F, Jarlier V, Nicolas-Chanoine MH, , Phylogenetic distribution of CTX-M- and non-extended-spectrum-β-lactamase-producing Escherichia coli isolates: group B2 isolates, except clone ST131, rarely produce CTX-M enzymes, J. Clin. Microbiol. 2012 Sep;50(9):2974-81.
• 2012
  Fabre L, Zhang J, Guigon G, Le Hello S, Guibert V, Accou-Demartin M, de Romans S, Lim C, Roux C, Passet V, Diancourt L, Guibourdenche M, Issenhuth-Jeanjean S, Achtman M, Brisse S, Sola C, Weill FX, CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections, PLoS ONE 2012;7(5):e36995.
• 2012
  Ginevra C, Jacotin N, Diancourt L, Guigon G, Arquilliere R, Meugnier H, Descours G, Vandenesch F, Etienne J, Lina G, Caro V, Jarraud S, Legionella pneumophila sequence type 1/Paris pulsotype subtyping by spoligotyping, J. Clin. Microbiol. 2012 Mar;50(3):696-701.
• 2011
  Bourhy P, Collet L, Lernout T, Zinini F, Hartskeerl RA, van der Linden H, Thiberge JM, Diancourt L, Brisse S, Giry C, Pettinelli F, Picardeau M, Human leptospira isolates circulating in Mayotte (Indian Ocean) have unique serological and molecular features, J. Clin. Microbiol. 2012 Feb;50(2):307-11.
• 2011
  Dublineau A, Batéjat C, Pinon A, Burguière AM, Leclercq I, Manuguerra JC, , Persistence of the 2009 pandemic influenza A (H1N1) virus in water and on non-porous surface., PLoS One 2011 ; 6(11): e28043.
• 2011
  Berthet N, Nakouné E, Whist E, Selekon B, Burguière AM, Manuguerra JC, Gessain A, Kazanji M, Maculopapular lesions in the Central African Republic, Lancet 2011 Oct;378(9799):1354.
• 2011
  Cheval J, Sauvage V, Frangeul L, Dacheux L, Guigon G, Dumey N, Pariente K, Rousseaux C, Dorange F, Berthet N, Brisse S, Moszer I, Bourhy H, Manuguerra CJ, Lecuit M, Burguiere A, Caro V, Eloit M, , Evaluation of high-throughput sequencing for identifying known and unknown viruses in biological samples., J Clin Microbiol 2011 Sep; 49(9): 3268-75.
• 2011
  Carnec X, Baize S, Reynard S, Diancourt L, Caro V, Tordo N, Bouloy M, Lassa virus nucleoprotein mutants generated by reverse genetics induce a robust type I interferon response in human dendritic cells and macrophages, J. Virol. 2011 Nov;85(22):12093-7.
• 2011
  Sauvage V, Foulongne V, Cheval J, Ar Gouilh M, Pariente K, Dereure O, Manuguerra JC, Richardson J, Lecuit M, Burguière A, Caro V, Eloit M, , Human polyomavirus related to African green monkey lymphotropic polyomavirus., Emerg Infect Dis 2011 Aug; 17(8): 1364-70.
• 2011
  Sauvage V, Cheval J, Foulongne V, Gouilh MA, Pariente K, Manuguerra JC, Richardson J, Dereure O, Lecuit M, Burguiere A, Caro V, Eloit M, , Identification of the first human gyrovirus, a virus related to chicken anemia virus., J Virol 2011 Aug; 85(15): 7948-50.
• 2011
  Gouilh MA, Puechmaille SJ, Gonzalez JP, Teeling E, Kittayapong P, Manuguerra JC, SARS-Coronavirus ancestor’s foot-prints in South-East Asian bat colonies and the refuge theory, Infect. Genet. Evol. 2011 Oct;11(7):1690-702.
• 2011
  Sabarly V, Bouvet O, Glodt J, Clermont O, Skurnik D, Diancourt L, de Vienne D, Denamur E, Dillmann C, The decoupling between genetic structure and metabolic phenotypes in Escherichia coli leads to continuous phenotypic diversity, J. Evol. Biol. 2011 Jul;24(7):1559-71.
• 2011
  Mahjoub-Messai F, Bidet P, Caro V, Diancourt L, Biran V, Aujard Y, Bingen E, Bonacorsi S, Escherichia coli isolates causing bacteremia via gut translocation and urinary tract infection in young infants exhibit different virulence genotypes, J. Infect. Dis. 2011 Jun;203(12):1844-9.
• 2011
  Buckwalter MR, Nga PT, Gouilh MA, Fiette L, Bureau JF, Laird ME, Buchrieser J, Ozden S, Cheval J, Eloit M, Manuguerra JC, Gessain A, Brey PT, Fontanet A, Albert ML, Identification of a novel neuropathogenic Theiler’s murine encephalomyelitis virus, J. Virol. 2011 Jul;85(14):6893-905.
• 2011
  Clermont O, Olier M, Hoede C, Diancourt L, Brisse S, Keroudean M, Glodt J, Picard B, Oswald E, Denamur E, Animal and human pathogenic Escherichia coli strains share common genetic backgrounds, Infect. Genet. Evol. 2011 Apr;11(3):654-62.
• 2010
  Krida G, Diancourt L, Bouattour A, Rhim A, Chermiti B, Failloux AB, [Assessment of the risk of introduction to Tunisia of the Rift Valley fever virus by the mosquito Culex pipiens], Bull Soc Pathol Exot 2011 Oct;104(4):250-9.
• 2010
  Berthet N, Deletoile A, Passet V, Kennedy GC, Manuguerra JC, Cole ST, Brisse S, Reconstructed ancestral sequences improve pathogen identification using resequencing DNA microarrays, PLoS ONE 2010;5(12):e15243.
• 2010
  Leclercq I, Berthet N, Batéjat C, Rousseaux C, Dickinson P, Old IG, Kong K, Kennedy GC, Cole ST, Manuguerra JC, , Use of consensus sequences for the design of high density resequencing microarrays: the influenza virus paradigm., BMC Genomics 2010 Oct; 11(): 586.
• 2010
  Enache-Angoulvant A, Bourget M, Brisse S, Stockman-Pannier C, Diancourt L, François N, Rimek D, Fairhead C, Poulain D, Hennequin C, Multilocus microsatellite markers for molecular typing of Candida glabrata: application to analysis of genetic relationships between bloodstream and digestive system isolates, J. Clin. Microbiol. 2010 Nov;48(11):4028-34.
• 2010
  Dacheux L, Berthet N, Dissard G, Holmes EC, Delmas O, Larrous F, Guigon G, Dickinson P, Faye O, Sall AA, Old IG, Kong K, Kennedy GC, Manuguerra JC, Cole ST, Caro V, Gessain A, Bourhy H, Application of broad-spectrum resequencing microarray for genotyping rhabdoviruses, J. Virol. 2010 Sep;84(18):9557-74.
• 2010
  Czeher C, Labbo R, Vieville G, Arzika I, Bogreau H, Rogier C, Diancourt L, Brisse S, Ariey F, Duchemin JB, Population genetic structure of Anopheles gambiae and Anopheles arabiensis in Niger, J. Med. Entomol. 2010 May;47(3):355-66.
• 2010
  Diancourt L, Passet V, Nemec A, Dijkshoorn L, Brisse S, The population structure of Acinetobacter baumannii: expanding multiresistant clones from an ancestral susceptible genetic pool, PLoS ONE 2010;5(4):e10034.
• 2009
  Brisse S, Fevre C, Passet V, Issenhuth-Jeanjean S, Tournebize R, Diancourt L, Grimont P, Virulent clones of Klebsiella pneumoniae: identification and evolutionary scenario based on genomic and phenotypic characterization, PLoS ONE 2009;4(3):e4982.
• 2009
  Brisse S, Pannier C, Angoulvant A, de Meeus T, Diancourt L, Faure O, Muller H, Peman J, Viviani MA, Grillot R, Dujon B, Fairhead C, Hennequin C, Uneven distribution of mating types among genotypes of Candida glabrata isolates from clinical samples, Eukaryotic Cell 2009 Mar;8(3):287-95.
• 2008
  Jaureguy F, Landraud L, Passet V, Diancourt L, Frapy E, Guigon G, Carbonnelle E, Lortholary O, Clermont O, Denamur E, Picard B, Nassif X, Brisse S, Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains, BMC Genomics 2008;9:560.
• 2008
  Berthet N, Reinhardt AK, Leclercq I, van Ooyen S, Batéjat C, Dickinson P, Stamboliyska R, Old IG, Kong KA, Dacheux L, Bourhy H, Kennedy GC, Korfhage C, Cole ST, Manuguerra JC, , Phi29 polymerase based random amplification of viral RNA as an alternative to random RT-PCR., BMC Mol Biol 2008 Sep; 9(): 77.
• 2008
  Nemec A, Krízová L, Maixnerová M, Diancourt L, van der Reijden TJ, Brisse S, van den Broek P, Dijkshoorn L, Emergence of carbapenem resistance in Acinetobacter baumannii in the Czech Republic is associated with the spread of multidrug-resistant strains of European clone II, J. Antimicrob. Chemother. 2008 Sep;62(3):484-9.
• 2008
  Vandenbogaert M, Li-Thiao-Té S, Kaltenbach HM, Zhang R, Aittokallio T, Schwikowski B, Alignment of LC-MS images, with applications to biomarker discovery and protein identification, Proteomics 2008 Feb;8(4):650-72.
• 2008
  Berthet N, Dickinson P, Filliol I, Reinhardt AK, Batejat C, Vallaeys T, Kong KA, Davies C, Lee W, Zhang S, Turpaz Y, Heym B, Coralie G, Dacheux L, Burguière AM, Bourhy H, Old IG, Manuguerra JC, Cole ST, Kennedy GC, , Massively parallel pathogen identification using high-density microarrays., Microb Biotechnol 2008 Jan; 1(1): 79-86.
• 2007
  Tayeb LA, Lefevre M, Passet V, Diancourt L, Brisse S, Grimont PA, Comparative phylogenies of Burkholderia, Ralstonia, Comamonas, Brevundimonas and related organisms derived from rpoB, gyrB and rrs gene sequences, Res. Microbiol. 2008 Apr;159(3):169-77.
• 2007
  Diancourt L, Passet V, Chervaux C, Garault P, Smokvina T, Brisse S, Multilocus sequence typing of Lactobacillus casei reveals a clonal population structure with low levels of homologous recombination, Appl. Environ. Microbiol. 2007 Oct;73(20):6601-11.
• 2007
  Medeiros R, Rameix-Welti MA, Lorin V, Ribaud P, Manuguerra JC, Socie G, Scieux C, Naffakh N, van der Werf S, , Failure of zanamivir therapy for pneumonia in a bone-marrow transplant recipient infected by a zanamivir-sensitive influenza A (H1N1) virus., Antivir Ther 2007 ; 12(4): 571-6.
• 2006
  Schuffenecker I, Iteman I, Michault A, Murri S, Frangeul L, Vaney MC, Lavenir R, Pardigon N, Reynes JM, Pettinelli F, Biscornet L, Diancourt L, Michel S, Duquerroy S, Guigon G, Frenkiel MP, Bréhin AC, Cubito N, Desprès P, Kunst F, Rey FA, Zeller H, Brisse S, Genome microevolution of chikungunya viruses causing the Indian Ocean outbreak, PLoS Med. 2006 Jul;3(7):e263.
• 2006
  Régnier M, Vandenbogaert M, Comparison of statistical significance criteria, J Bioinform Comput Biol 2006 Apr;4(2):537-51.
• 2005
  De Champs C, Vellin JF, Diancourt L, Brisse S, Kemeny JL, Gilain L, Mom T, Laryngeal scleroma associated with Klebsiella pneumoniae subsp. ozaenae, J. Clin. Microbiol. 2005 Nov;43(11):5811-3.
• 2005
  Diancourt L, Passet V, Verhoef J, Grimont PA, Brisse S, Multilocus sequence typing of Klebsiella pneumoniae nosocomial isolates, J. Clin. Microbiol. 2005 Aug;43(8):4178-82.
• 2005
  Mégret F, Prehaud C, Lafage M, Batejat C, Escriou N, Lay S, Thoulouze MI, Lafon M, Immunopotentiation of the antibody response against influenza HA with apoptotic bodies generated by rabies virus G-ERA protein-driven apoptosis, Vaccine 2005 Nov;23(46-47):5342-50.
• 2005
  Tompa M, Li N, Bailey TL, Church GM, De Moor B, Eskin E, Favorov AV, Frith MC, Fu Y, Kent WJ, Makeev VJ, Mironov AA, Noble WS, Pavesi G, Pesole G, Régnier M, Simonis N, Sinha S, Thijs G, van Helden J, Vandenbogaert M, Weng Z, Workman C, Ye C, Zhu Z, Assessing computational tools for the discovery of transcription factor binding sites, Nat. Biotechnol. 2005 Jan;23(1):137-44.
• 2003
  Vandenbogaert M, Makeev V, Analysis of bacterial RM-systems through genome-scale analysis and related taxonomy issues, In Silico Biol. (Gedrukt) 2003;3(1-2):127-43.