Timeline

Benno Schwikowski
Head of Structure
14 Nov 2016
software

GRAVITY

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10 May 2016
project

Systems biology of cell infection by the bacterial pathogen Listeria monocytogenes

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05 Feb 2016
project

Ageing in Pasteur

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05 Oct 2015
event

Histology informatics: dissecting breast tumour spatial and molecular heterogeneity

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14 Sep 2015
project

PTR 392 – Systems-wide analysis of Leishmania virulence

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29 Jun 2015
publication

Bacterial Internalization, Localization, and Effectors Shape the Epithelial Immune Response during Shigella flexneri Infection

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15 Jun 2015
software

Cytoscape: Visualization and analysis of omics data in interaction networks

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11 May 2015
team

Systems Biology

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06 Feb 2015
publication

Filter-free exhaustive odds ratio-based genome-wide interaction approach pinpoints evidence for interaction in the HLA region in psoriasis

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07 Jan 2015
publication

Automated flow cytometric analysis across large numbers of samples and cell types

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18 Dec 2014
publication

The Cyni framework for network inference in Cytoscape

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01 Jul 2014
publication

The Cytoscape app article collection

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09 Dec 2013
publication

Analysis of time-resolved gene expression measurements across individuals

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17 Jul 2013
publication

TLM-Quant: an open-source pipeline for visualization and quantification of gene expression heterogeneity in growing microbial cells

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01 Apr 2013
publication

Identification of additional proteins in differential proteomics using protein interaction networks

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07 Nov 2012
publication

Automated phosphopeptide identification using multiple MS/MS fragmentation modes

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13 Mar 2012
publication

Feature detection with controlled error rates in LC/MS images

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01 Mar 2012
publication

Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis

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01 Mar 2012
publication

Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism

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06 Dec 2010
publication

Fragmentation-free LC-MS can identify hundreds of proteins

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11 May 2010
publication

Evolution of metabolic network organization

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01 May 2010
publication

MUDE: a new approach for optimizing sensitivity in the target-decoy search strategy for large-scale peptide/protein identification

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26 Sep 2008
publication

Phylogenetic distances are encoded in networks of interacting pathways

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01 Feb 2008
publication

Alignment of LC-MS images, with applications to biomarker discovery and protein identification

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07 Jul 2007
publication

Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics

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01 Jan 2007
publication

Integration of biological networks and gene expression data using Cytoscape

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24 Nov 2006
publication

GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring

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30 Jul 2006
publication

Graph-based methods for analysing networks in cell biology

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03 Nov 2005
publication

Signal maps for mass spectrometry-based comparative proteomics

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01 Nov 2005
publication

ProbIDtree: an automated software program capable of identifying multiple peptides from a single collision-induced dissociation spectrum collected by a tandem mass spectrometer

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20 Jun 2005
publication

Tools enabling the elucidation of molecular pathways active in human disease: application to Hepatitis C virus infection

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01 Aug 2004
publication

Predicting protein-peptide interactions via a network-based motif sampler

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01 Jan 2004
publication

Towards optimally multiplexed applications of universal arrays

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01 Nov 2003
publication

Cytoscape: a software environment for integrated models of biomolecular interaction networks

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01 Jan 2003
publication

The restriction scaffold problem

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01 Oct 2002
publication

ProbID: a probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data

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01 Jan 2002
publication

Algorithms for phylogenetic footprinting

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01 Jan 2002
publication

Discovering regulatory and signalling circuits in molecular interaction networks

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01 Dec 2000
publication

A network of protein-protein interactions in yeast

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01 Jan 2000
publication

Universal DNA tag systems: a combinatorial design scheme

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01 Jan 2000
publication

An exact algorithm to identify motifs in orthologous sequences from multiple species

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01 Jan 1997
publication

The deferred path heuristic for the generalized tree alignment problem

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