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© Research
Software

Cytoscape: Visualization and analysis of omics data in interaction networks

Scientific Fields
Diseases
Organisms
Applications
Technique
Starting Date
15
Jun 2015
Status
Ongoing
Members
1
Structures
1
Publications
6

About

Screen Shot 2015-10-01 at 7.04.41 PM

Cytoscape is the worldwide standard open-source platform for network visualization and data integration. This project, which we started at the Institute for Systems Biology in Seattle, provides a universal, customizable tool for the network-based visualization and analysis of large-scale datasets. The Cytoscape core software is now co-developed in the United States, Canada, and Europe, and is regarded as an innovative model for scientific collaboration. As part of the NIH-funded National Resource for Network Biology, we currently extend Cytoscape towards the learning of networks from omics data. Our Cyni network inference toolbox for Cytoscape 3 provides an infrastructure for the inference of networks from global measurements, such as transcriptomics.

 

References