Timeline

Marc Delarue
Head of Structure
01 Jul 2020
publication
Structural evidence for the binding of monocarboxylates and dicarboxylates at pharmacologically relevant extracellular sites of a pentameric ligand-gated ion channel.
Read more16 Jun 2020
publication
Structural basis for allosteric transitions of a multidomain pentameric ligand-gated ion channel.
Read more27 Mar 2020
publication
Structural basis for the increased processivity of D-family DNA polymerases in complex with PCNA.
Read more26 Jul 2019
28 May 2019
publication
Structural evidence for an “in trans” base selection mechanism involving Loop1 in polymerase μ at an NHEJ double-strand break junction
Read more26 Mar 2019
publication
Rapid enzymatic synthesis of long RNA polymers: A simple protocol to generate RNA libraries with random sequences
Read more13 Feb 2019
18 Jan 2019
publication
Structure of the DP1–DP2 PolD complex bound with DNA and its implications for the evolutionary history of DNA and RNA polymerases
Read more18 Jan 2019
publication
Structure of the DP1-DP2 PolD complex bound with DNA and its implications for the evolutionary history of DNA and RNA polymerases
Read more15 Jan 2019
28 Dec 2018
publication
Numerical Encodings of Amino Acids in Multivariate Gaussian Modeling of Protein Multiple Sequence Alignments
Read more12 Dec 2018
publication
Electrostatics, proton sensor, and networks governing the gating transition in GLIC, a proton-gated pentameric ion channel
Read more28 Sep 2018
publication
Coarse-grained dynamics of supramolecules: Conformational changes in outer shells of Dengue viruses
Read more24 Jul 2018
publication
Combined approaches from physics, statistics, and computer science for protein structure prediction: (unity is strength)?
Read more06 Jul 2018
publication
Enzymatic synthesis of random sequences of RNA and RNA analogues by DNA polymerase theta mutants for the generation of aptamer libraries
Read more24 Apr 2018
publication
Structural Basis for a Bimodal Allosteric Mechanism of General Anesthetic Modulation in Pentameric Ligand-Gated Ion Channels
Read more12 Apr 2018
publication
Terminal deoxynucleotidyltransferase: the story of an untemplated DNA polymerase capable of DNA bridging and templated synthesis across strands
Read more09 Apr 2018
publication
Crystal structures of a pentameric ion channel gated by alkaline pH show a widely open pore and identify a cavity for modulation
Read more15 Mar 2018
27 Dec 2017
publication
Full mutational mapping of titratable residues helps to identify proton-sensors involved in the control of channel gating in the Gloeobacter violaceus pentameric ligand-gated ion channel
Read more21 Oct 2017
09 May 2017
publication
String method solution of the gating pathways for a pentameric ligand-gated ion channel
Read more15 Mar 2017
24 Feb 2017
publication
The Renormalization Group and Its Applications to Generating Coarse-Grained Models of Large Biological Molecular Systems
Read more27 Dec 2016
16 Dec 2016
publication
Barbiturates Bind in the GLIC Ion Channel Pore and Cause Inhibition by Stabilizing a Closed State
Read more01 Oct 2016
publication
Vaccination Against Human Papilloma Viruses Leads to a Favorable Cytokine Profile of Specific T Cells
Read more22 Aug 2016
publication
Shared active site architecture between archaeal PolD and multi-subunit RNA polymerases revealed by X-ray crystallography.
Read more04 Aug 2016
publication
Structural Basis for a New Templated Activity by Terminal Deoxynucleotidyl Transferase: Implications for V(D)J Recombination
Read more26 Apr 2016
24 Mar 2016
24 Feb 2016
publication
Structural Basis for Xenon Inhibition in a Cationic Pentameric Ligand-Gated Ion Channel
Read more04 Aug 2015
30 Jul 2015
30 Jul 2015
08 Jul 2015
11 May 2015
11 Mar 2015
publication
Structural basis for a novel mechanism of DNA bridging and alignment in eukaryotic DSB DNA repair
Read more26 Feb 2015
17 Feb 2015
publication
Allosteric and hyperekplexic mutant phenotypes investigated on an α1 glycine receptor transmembrane structure
Read more14 May 2014
publication
Crystallographic studies of pharmacological sites in pentameric ligand-gated ion channels
Read more06 Jan 2014
publication
Enhanced amino acid selection in fully evolved tryptophanyl-tRNA synthetase, relative to its urzyme, requires domain motion sensed by the D1 switch, a remote dynamic packing motif
Read more23 Dec 2013
publication
Crystal structures of a pentameric ligand-gated ion channel provide a mechanism for activation
Read more12 Sep 2013
publication
New nucleotide-competitive non-nucleoside inhibitors of terminal deoxynucleotidyl transferase: discovery, characterization, and crystal structure in complex with the target
Read more13 Jul 2013
publication
Structures of intermediates along the catalytic cycle of terminal deoxynucleotidyltransferase: dynamical aspects of the two-metal ion mechanism
Read more12 Feb 2013
publication
Structural basis for ion permeation mechanism in pentameric ligand-gated ion channels
Read more05 Feb 2013
publication
Computational assembly of polymorphic amyloid fibrils reveals stable aggregates
Read more01 Jan 2013
publication
Structural basis for potentiation by alcohols and anaesthetics in a ligand-gated ion channel
Read more28 Sep 2012
publication
2′-Deoxyribonucleoside phosphoramidate triphosphate analogues as alternative substrates for E. coli polymerase III
Read more16 Aug 2012
publication
Molecular recognition of canonical and deaminated bases by P. abyssi family B DNA polymerase
Read more06 Jun 2012
publication
Structure and pharmacology of pentameric receptor channels: from bacteria to brain
Read more13 May 2012
publication
A locally closed conformation of a bacterial pentameric proton-gated ion channel
Read more23 Dec 2011
07 Aug 2011
publication
Adapting Poisson-Boltzmann to the self-consistent mean field theory: application to protein side-chain modeling
Read more10 Jun 2011
publication
AquaSAXS: a web server for computation and fitting of SAXS profiles with non-uniformally hydrated atomic models
Read more20 Jan 2011
publication
X-ray structures of general anaesthetics bound to a pentameric ligand-gated ion channel
Read more18 Aug 2010
publication
Structural insights into the quinolone resistance mechanism of Mycobacterium tuberculosis DNA gyrase
Read more22 Mar 2010
publication
One-microsecond molecular dynamics simulation of channel gating in a nicotinic receptor homologue
Read more14 Feb 2010
publication
AQUASOL: An efficient solver for the dipolar Poisson-Boltzmann-Langevin equation
Read more07 Dec 2009
publication
Atomic structure and dynamics of pentameric ligand-gated ion channels: new insight from bacterial homologues
Read more13 Nov 2009
publication
Crystal structure of the extracellular domain of a bacterial ligand-gated ion channel
Read more05 Jun 2009
publication
Conferring a template-dependent polymerase activity to terminal deoxynucleotidyltransferase by mutations in the Loop1 region
Read more30 Apr 2009
01 Apr 2009
publication
Insights into the enzymatic mechanism of 6-phosphogluconolactonase from Trypanosoma brucei using structural data and molecular dynamics simulation
Read more24 Feb 2009
publication
Beyond the Poisson-Boltzmann model: modeling biomolecule-water and water-water interactions
Read more27 Jan 2009
publication
Independent saturation of three TrpRS subsites generates a partially assembled state similar to those observed in molecular simulations
Read more05 Nov 2008
publication
X-ray structure of a pentameric ligand-gated ion channel in an apparently open conformation
Read more26 Sep 2008
publication
Incorporating dipolar solvents with variable density in Poisson-Boltzmann electrostatics
Read more05 Dec 2007
publication
Dealing with structural variability in molecular replacement and crystallographic refinement through normal-mode analysis
Read more01 Jun 2007
publication
MinActionPath: maximum likelihood trajectory for large-scale structural transitions in a coarse-grained locally harmonic energy landscape
Read more12 Dec 2006
publication
An asymmetric underlying rule in the assignment of codons: possible clue to a quick early evolution of the genetic code via successive binary choices
Read more22 Nov 2006
publication
Three dimensional structure and implications for the catalytic mechanism of 6-phosphogluconolactonase from Trypanosoma brucei
Read more01 Sep 2006
publication
Determination of dihedral Psi angles in large proteins by combining NH(N)/C(alpha)H(alpha) dipole/dipole cross-correlation and chemical shifts
Read more01 Jul 2006
publication
NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis
Read more01 Jul 2006
publication
PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics
Read more08 Aug 2005
publication
Refinement of docked protein-ligand and protein-DNA structures using low frequency normal mode amplitude optimization
Read more01 Apr 2005
publication
Normal mode analysis suggests a quaternary twist model for the nicotinic receptor gating mechanism
Read more19 Apr 2004
publication
On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models
Read more25 Nov 2002
publication
Enzymatic and structural analysis of inhibitors designed against Mycobacterium tuberculosis thymidylate kinase. New insights into the phosphoryl transfer mechanism
Read more01 Jun 2002
publication
Database searching for thymidine and thymidylate kinase inhibitors using three-dimensional structure-based methods
Read more22 Mar 2002
publication