Ligne de temps

Marc Delarue
Responsable de Structure
23 mai 2024
publication

MinActionPath2: path generation between different conformations of large macromolecular assemblies by action minimization.

Lire plus
07 févr. 2024
news

Des moteurs moléculaires produisent l’énergie nécessaire pour nourrir les bactéries

Lire plus
14 déc. 2023
publication

Molecular basis for proofreading by the unique exonuclease domain of Family-D DNA polymerases.

Lire plus
13 juin 2023
publication

Analyzing the Geometry and Dynamics of Viral Structures: A Review of Computational Approaches Based on Alpha Shape Theory, Normal Mode Analysis, and Poisson–Boltzmann Theories

Lire plus
27 avr. 2023
project

DNA-binding mechanism and evolution of replication protein A

Lire plus
22 avr. 2023
publication

DNA-binding mechanism and evolution of replication protein A.

Lire plus
18 avr. 2023
publication

Reclassification of family A DNA polymerases reveals novel functional subfamilies and distinctive structural features

Lire plus
28 févr. 2023
publication

Computing the Gromov-Wasserstein Distance between Two Surface Meshes Using Optimal Transport

Lire plus
06 mai 2022
news

Lauréats du prix de thèse 2022 de l’AFC : Darius Czernecki

Lire plus
18 nov. 2021
publication

Structural dynamics and determinants of 2-aminoadenine specificity in DNA polymerase DpoZ of vibriophage ϕVC8.

Lire plus
25 oct. 2021
publication

Extracting Dynamical Correlations and Identifying Key Residues for Allosteric Communication in Proteins by correlationplus.

Lire plus
05 août 2021
publication

Characterization of a triad of genes in cyanophage S-2L sufficient to replace adenine by 2-aminoadenine in bacterial DNA.

Lire plus
11 juin 2021
publication

Parameterizing elastic network models to capture the dynamics of proteins.

Lire plus
01 juin 2021
publication

Physics approach to the variable-mass optimal-transport problem

Lire plus
21 mai 2021
publication

Simultaneous Identification of Multiple Binding Sites in Proteins: A Statistical Mechanics Approach.

Lire plus
23 avr. 2021
publication

How cyanophage S-2L rejects adenine and incorporates 2-aminoadenine to saturate hydrogen bonding in its DNA.

Lire plus
04 févr. 2021
software

MinActionPath

Lire plus
01 janv. 2021
publication

Fast and efficient purification of SARS-CoV-2 RNA dependent RNA polymerase complex expressed in Escherichia coli.

Lire plus
08 déc. 2020
publication

Structural Studies of HNA Substrate Specificity in Mutants of an Archaeal DNA Polymerase Obtained by Directed Evolution

Lire plus
01 juil. 2020
publication

Structural evidence for the binding of monocarboxylates and dicarboxylates at pharmacologically relevant extracellular sites of a pentameric ligand-gated ion channel.

Lire plus
16 juin 2020
publication

Structural basis for allosteric transitions of a multidomain pentameric ligand-gated ion channel.

Lire plus
27 mars 2020
publication

Structural basis for the increased processivity of D-family DNA polymerases in complex with PCNA.

Lire plus
26 juil. 2019
publication

Statistical Physics Approach to the Optimal Transport Problem.

Lire plus
28 mai 2019
publication

Structural evidence for an “in trans” base selection mechanism involving Loop1 in polymerase μ at an NHEJ double-strand break junction

Lire plus
26 mars 2019
publication

Rapid enzymatic synthesis of long RNA polymers: A simple protocol to generate RNA libraries with random sequences

Lire plus
28 févr. 2019
publication

An updated structural classification of replicative DNA polymerases.

Lire plus
13 févr. 2019
team

Biologie Moléculaire Structurale et Processus Infectieux

Lire plus
18 janv. 2019
publication

Structure of the DP1–DP2 PolD complex bound with DNA and its implications for the evolutionary history of DNA and RNA polymerases

Lire plus
01 janv. 2019
publication

Structure of the DP1-DP2 PolD complex bound with DNA and its implications for the evolutionary history of DNA and RNA polymerases.

Lire plus
28 déc. 2018
publication

Numerical Encodings of Amino Acids in Multivariate Gaussian Modeling of Protein Multiple Sequence Alignments

Lire plus
12 déc. 2018
publication

Electrostatics, proton sensor, and networks governing the gating transition in GLIC, a proton-gated pentameric ion channel

Lire plus
28 sept. 2018
publication

Coarse-grained dynamics of supramolecules: Conformational changes in outer shells of Dengue viruses

Lire plus
24 juil. 2018
publication

Combined approaches from physics, statistics, and computer science for protein structure prediction: (unity is strength)?

Lire plus
06 juil. 2018
publication

Enzymatic synthesis of random sequences of RNA and RNA analogues by DNA polymerase theta mutants for the generation of aptamer libraries

Lire plus
24 avr. 2018
publication

Structural Basis for a Bimodal Allosteric Mechanism of General Anesthetic Modulation in Pentameric Ligand-Gated Ion Channels

Lire plus
12 avr. 2018
publication

Terminal deoxynucleotidyltransferase: the story of an untemplated DNA polymerase capable of DNA bridging and templated synthesis across strands

Lire plus
09 avr. 2018
publication

Crystal structures of a pentameric ion channel gated by alkaline pH show a widely open pore and identify a cavity for modulation

Lire plus
15 mars 2018
publication

Meet-U: Educating through research immersion

Lire plus
27 déc. 2017
publication

Full mutational mapping of titratable residues helps to identify proton-sensors involved in the control of channel gating in the Gloeobacter violaceus pentameric ligand-gated ion channel

Lire plus
21 oct. 2017
publication

Ab initio sampling of transition paths by conditioned Langevin dynamics

Lire plus
09 mai 2017
publication

String method solution of the gating pathways for a pentameric ligand-gated ion channel

Lire plus
15 mars 2017
publication

Identification of a pre-active conformation of a pentameric channel receptor

Lire plus
24 févr. 2017
publication

The Renormalization Group and Its Applications to Generating Coarse-Grained Models of Large Biological Molecular Systems

Lire plus
27 déc. 2016
publication

Comparative Normal Mode Analysis of the Dynamics of DENV and ZIKV Capsids

Lire plus
16 déc. 2016
publication

Barbiturates Bind in the GLIC Ion Channel Pore and Cause Inhibition by Stabilizing a Closed State

Lire plus
01 oct. 2016
publication

Vaccination Against Human Papilloma Viruses Leads to a Favorable Cytokine Profile of Specific T Cells

Lire plus
22 août 2016
publication

Shared active site architecture between archaeal PolD and multi-subunit RNA polymerases revealed by X-ray crystallography.

Lire plus
04 août 2016
publication

Structural Basis for a New Templated Activity by Terminal Deoxynucleotidyl Transferase: Implications for V(D)J Recombination

Lire plus
26 avr. 2016
publication

Beyond Poisson-Boltzmann: Numerical Sampling of Charge Density Fluctuations

Lire plus
24 mars 2016
publication

Sites of Anesthetic Inhibitory Action on a Cationic Ligand-Gated Ion Channel

Lire plus
24 févr. 2016
publication

Structural Basis for Xenon Inhibition in a Cationic Pentameric Ligand-Gated Ion Channel

Lire plus
01 janv. 2016
publication

Shared active site architecture between archaeal PolD and multi-subunit RNA polymerases revealed by X-ray crystallography.

Lire plus
04 août 2015
project

Development of methods in computational structural biology

Lire plus
31 juil. 2015
project

DNA Polymerases Engineering and Synthetic Biology

Lire plus
30 juil. 2015
software

NOMAD-Ref

Lire plus
30 juil. 2015
project

DNA Repair and Cancer

Lire plus
08 juil. 2015
project

Ligand-gated Ion channels

Lire plus
11 mai 2015
team

Architecture et Dynamique des Macromolécules Biologiques

Lire plus
15 avr. 2015
publication

Structural basis for a novel mechanism of DNA bridging and alignment in eukaryotic DSB DNA repair

Lire plus
03 mars 2015
publication

Allosteric and hyperekplexic mutant phenotypes investigated on an α1 glycine receptor transmembrane structure.

Lire plus
26 févr. 2015
publication

Genuine open form of the pentameric ligand-gated ion channel GLIC

Lire plus
14 mai 2014
publication

Crystallographic studies of pharmacological sites in pentameric ligand-gated ion channels

Lire plus
06 janv. 2014
publication

Enhanced amino acid selection in fully evolved tryptophanyl-tRNA synthetase, relative to its urzyme, requires domain motion sensed by the D1 switch, a remote dynamic packing motif

Lire plus
23 déc. 2013
publication

Crystal structures of a pentameric ligand-gated ion channel provide a mechanism for activation

Lire plus
12 sept. 2013
publication

New nucleotide-competitive non-nucleoside inhibitors of terminal deoxynucleotidyl transferase: discovery, characterization, and crystal structure in complex with the target

Lire plus
13 juil. 2013
publication

Structures of intermediates along the catalytic cycle of terminal deoxynucleotidyltransferase: dynamical aspects of the two-metal ion mechanism

Lire plus
12 févr. 2013
publication

Structural basis for ion permeation mechanism in pentameric ligand-gated ion channels

Lire plus
05 févr. 2013
publication

Computational assembly of polymorphic amyloid fibrils reveals stable aggregates

Lire plus
01 janv. 2013
publication

Structural basis for potentiation by alcohols and anaesthetics in a ligand-gated ion channel

Lire plus
28 sept. 2012
publication

2′-Deoxyribonucleoside phosphoramidate triphosphate analogues as alternative substrates for E. coli polymerase III

Lire plus
16 août 2012
publication

Molecular recognition of canonical and deaminated bases by P. abyssi family B DNA polymerase

Lire plus
06 juin 2012
publication

Structure and pharmacology of pentameric receptor channels: from bacteria to brain

Lire plus
13 mai 2012
publication

A locally closed conformation of a bacterial pentameric proton-gated ion channel

Lire plus
23 déc. 2011
publication

[X-ray structures of general anesthetics bound to their molecular targets]

Lire plus
07 août 2011
publication

Adapting Poisson-Boltzmann to the self-consistent mean field theory: application to protein side-chain modeling

Lire plus
10 juin 2011
publication

AquaSAXS: a web server for computation and fitting of SAXS profiles with non-uniformally hydrated atomic models

Lire plus
20 janv. 2011
publication

X-ray structures of general anaesthetics bound to a pentameric ligand-gated ion channel

Lire plus
18 août 2010
publication

Structural insights into the quinolone resistance mechanism of Mycobacterium tuberculosis DNA gyrase

Lire plus
22 mars 2010
publication

One-microsecond molecular dynamics simulation of channel gating in a nicotinic receptor homologue

Lire plus
14 févr. 2010
publication

AQUASOL: An efficient solver for the dipolar Poisson-Boltzmann-Langevin equation

Lire plus
07 déc. 2009
publication

Atomic structure and dynamics of pentameric ligand-gated ion channels: new insight from bacterial homologues

Lire plus
13 nov. 2009
publication

Crystal structure of the extracellular domain of a bacterial ligand-gated ion channel

Lire plus
05 juin 2009
publication

Conferring a template-dependent polymerase activity to terminal deoxynucleotidyltransferase by mutations in the Loop1 region

Lire plus
30 avr. 2009
publication

Computing ion solvation free energies using the dipolar Poisson model

Lire plus
01 avr. 2009
publication

Insights into the enzymatic mechanism of 6-phosphogluconolactonase from Trypanosoma brucei using structural data and molecular dynamics simulation

Lire plus
05 mars 2009
publication

Structure of the archaeal pab87 peptidase reveals a novel self-compartmentalizing protease family

Lire plus
24 févr. 2009
publication

Beyond the Poisson-Boltzmann model: modeling biomolecule-water and water-water interactions

Lire plus
27 janv. 2009
publication

Independent saturation of three TrpRS subsites generates a partially assembled state similar to those observed in molecular simulations

Lire plus
05 nov. 2008
publication

X-ray structure of a pentameric ligand-gated ion channel in an apparently open conformation

Lire plus
26 sept. 2008
publication

Incorporating dipolar solvents with variable density in Poisson-Boltzmann electrostatics

Lire plus
05 déc. 2007
publication

Dealing with structural variability in molecular replacement and crystallographic refinement through normal-mode analysis

Lire plus
01 juin 2007
publication

MinActionPath: maximum likelihood trajectory for large-scale structural transitions in a coarse-grained locally harmonic energy landscape

Lire plus
12 déc. 2006
publication

An asymmetric underlying rule in the assignment of codons: possible clue to a quick early evolution of the genetic code via successive binary choices

Lire plus
22 nov. 2006
publication

Three dimensional structure and implications for the catalytic mechanism of 6-phosphogluconolactonase from Trypanosoma brucei

Lire plus
01 sept. 2006
publication

Determination of dihedral Psi angles in large proteins by combining NH(N)/C(alpha)H(alpha) dipole/dipole cross-correlation and chemical shifts

Lire plus
01 juil. 2006
publication

NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis

Lire plus
01 juil. 2006
publication

PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics

Lire plus
08 août 2005
publication

Refinement of docked protein-ligand and protein-DNA structures using low frequency normal mode amplitude optimization

Lire plus
01 avr. 2005
publication

Normal mode analysis suggests a quaternary twist model for the nicotinic receptor gating mechanism

Lire plus
19 avr. 2004
publication

On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models

Lire plus
11 avr. 2003
publication

Mycobacterium tuberculosis thymidylate kinase: structural studies of intermediates along the reaction pathway. Fioravanti E, Haouz A, Ursby T, Munier-Lehmann H, Delarue M, Bourgeois D.

Lire plus
01 févr. 2003
publication

Enzymatic and structural analysis of inhibitors designed against Mycobacterium tuberculosis thymidylate kinase. New insights into the phosphoryl transfer mechanism

Lire plus
26 juil. 2002
publication

Simplified normal mode analysis of conformational transitions in DNA-dependent polymerases: the elastic network model.

Lire plus
01 juin 2002
publication

Database searching for thymidine and thymidylate kinase inhibitors using three-dimensional structure-based methods

Lire plus
22 mars 2002
publication

Cryophotolysis of caged compounds: a technique for trapping intermediate states in protein crystals

Lire plus
01 févr. 2002
publication

Crystal structures of a template-independent DNA polymerase: murine terminal deoxynucleotidyltransferase.

Lire plus
03 août 2001
publication

X-ray structure of TMP kinase from Mycobacterium tuberculosis complexed with TMP at 1.95 A resolution.

Lire plus
01 déc. 2000
publication

Crystallization of the catalytic domain of murine terminal deoxynucleotidyl transferase.

Lire plus
01 nov. 2000
publication

General formalism for phase combination and phase refinement: a statistical thermodynamics approach in reciprocal space.

Lire plus
01 nov. 2000
publication

Resolution of the phase-ambiguity problem in the centrosymmetric P [1] space group by Monte Carlo methods.

Lire plus
14 juil. 2000
publication

Solution structural studies and low-resolution model of the Schizosaccharomyces pombe sap1 protein.

Lire plus
23 juin 2000
publication

Aspartyl tRNA-synthetase from Escherichia coli: flexibility and adaptability to the substrates.

Lire plus
01 févr. 2000
publication

Crystallization and preliminary X-ray analysis of the thymidylate kinase from Mycobacterium tuberculosis.

Lire plus
01 juin 1998
publication

Minimisation of protein lattice distortion based on self-consitent mean-field theory.

Lire plus
01 juin 1997
publication

The inverse protein folding problem: self-consistent mean field optimisation of a structure specific mutation matrix.

Lire plus
01 juin 1997
publication

The native sequence determines sidechain packing in a protein, but does optimal sidechain packing determine the native sequence?

Lire plus
16 sept. 1996
publication

Cloning and characterisation of a gene from Plasmodium vivax and P. knowlesi: homology with valine-tRNA synthetase.

Lire plus
01 juin 1996
publication

Converting sequence block alignments into structural insights.

Lire plus
01 avr. 1996
publication

Mean-field minimization methods for biological macromolecules.

Lire plus
01 juil. 1995
publication

Structure of phenylalanyl-tRNA synthetase from Thermus thermophilus.

Lire plus
01 juin 1995
publication

Atomic environment energies in proteins defined from statistics of accessible and contact surface areas.

Lire plus
01 juin 1995
publication

Partition of aminoacyl-tRNA synthetases in two different structural classes dating back to early metabolism: implications for the origin of the genetic code and the nature of protein sequences.

Lire plus
01 févr. 1995
publication

A self consistent mean field approach to simultaneous gap closure and side-chain positioning in homology modelling.

Lire plus
01 févr. 1995
publication

Aminoacyl-tRNA synthetases.

Lire plus
25 nov. 1994
publication

Synthesis and recognition of aspartyl-adenylate by Thermus thermophilus aspartyl-tRNA synthetase.

Lire plus
18 nov. 1994
publication

Crystallization and X-ray crystallographic analysis of recombinant chicken poly(ADP-ribose) polymerase catalytic domain produced in Sf9 insect cells.

Lire plus
01 nov. 1994
publication

Polar and nonpolar atomic environments in the protein core: implications for folding and binding.

Lire plus
15 juil. 1994
publication

Crystal structure of a prokaryotic aspartyl tRNA-synthetase.

Lire plus
03 juin 1994
publication

Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy.

Lire plus
01 juin 1994
publication

Rift Valley fever virus L segment: correction of the sequence and possible functional role of newly identified regions conserved in RNA-dependent polymerases.

Lire plus
01 oct. 1993
publication

The aminoacyl-tRNA synthetase family: modules at work.

Lire plus
05 juil. 1993
publication

Crystal structure of cleaved bovine antithrombin III at 3.2 A resolution.

Lire plus
25 avr. 1993
publication

Identification of potential active-site residues in the human poly(ADP-ribose) polymerase.

Lire plus
01 sept. 1992
publication

Three-dimensional structure of phenylalanyl-transfer RNA synthetase from Thermus thermophilus HB8 at 0.6- nm resolution.

Lire plus
02 janv. 1992
publication

Aminoacyl-tRNA Synthetases: Partition into two Classes

Lire plus
13 sept. 1990
publication

Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs.

Lire plus
01 août 1990
publication

Antithrombin III: structural and functional aspects.

Lire plus
01 juin 1990
publication

Crystal structure of cleaved bovine antithrombin III at 3.2 A resolution

Lire plus
01 mai 1990
publication

An attempt to unify the structure of polymerases.

Lire plus
20 déc. 1989
publication

Crystallization and preliminary crystallographic data for bovine antithrombin III.

Lire plus
01 déc. 1989
publication

Identification of four conserved motifs among the RNA-dependent polymerase encoding elements.

Lire plus
02 janv. 1989
publication

RNA Structure

Lire plus