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  • PhD Student
  • Physician
  • Post-doc
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  • Research Engineer
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  • Technician
  • Undergraduate Student
  • Veterinary
  • Visiting Scientist
  • Deputy Director of Center
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  • Director of Center
  • Director of Department
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Scientific Fields
Diseases
Organisms
Applications
Technique

About

The lab is focused on the algorithms and computation selected by evolution to perform biological decision-making. We address this topic with an interdisciplinary approach mixing statistical physics, Bayesian machine learning, information theory and various experimental biological setups.

If you have inquiries about open positions, please write to dbc-epi-recrutement at pasteur dot fr

Former Members

 

 

Projects

Project
Ongoing
7 Members

Deciding in Complex environments

Jean-Baptiste Masson (PI)

This project aims at understanding the dynamical behaviour of drosophila larva. The larva is a ~10000 neurons that exhibit complex behaviour dynamics in response to external stimuli and to possible internal states. This project is […]
Project
Ongoing
5 Members

Topological and statistical properties of neural connectomes

Christian L. Vestergaard (PI)

This project aims to characterize the mircrociruit structure of small animals’ brains and link this to how the brain processes information and encodes behavior.  The project relies on simultaneous access to recent synapse-resolution wiring […]
Project
Ongoing
3 Members

Numerical methods for network analysis

Christian L. Vestergaard (PI)

Networks provide an efficient formalism to study many complex real-world systems. They provide a natural modeling framework of structural and functional brain networks, protein interaction networks, social interactions, information and epidemic spreading, and infrastructural […]

Patents

DIVA patent: Method for visualizing at least a zone of an object in at least one interface

Abstract The invention concerns a method implemented by computer means for visualizing at least a zone of an object in at least one interface, said method comprising the following steps: obtaining at least one […]

Method and device for monitoring detection of odours by moving animals or by moving apparatus in turbulent flows

This patent consist on the combine use of electronics and antenna of insects to measure odour on moving systems (alive or not). It allows the measure of odour paths. An example of odour path […]

Method, device, and computer program for locating an emitting source

The patent consists on a computational biomimetic strategy to search for cue emitting sources in turbulent flows. An example of implementation can be seen on the following video with a robot searching for a thermal source. […]

Fundings

Partners

Publications

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Transversal Project

Brain connectivity and neurodegenerative diseases

The brain is a complex organ, and its well-being depends on the harmonic interactions with the rest of our body. Nearly all brain disorders manifest themselves in the dysfunction of communication between brain cells […]

Cancer Initiative

With more than 19.3 million new cases in 2020 worldwide, including nearly 400,000 in France, cancer is a common disease that affects or will affect us all one day, directly or indirectly. It is […]

INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations

IINCEPTION Goal The Inception aims to develop a core structure to mobilize data resources, numerical sciences, and fundamental experimental biology in various health issues (Official website here: https://www.inception-program.fr/en). The inception program uses Integrative Biology, […]

Quantitative biology

The Quantitative Biology program of the Institut Pasteur is intended to facilitate research and education at the interface of biology and the more quantitative sciences. One of the major aims of Quantitative Biology is thus to […]

Artificial Intelligence at the Institut Pasteur

Institut Pasteur is actively engaged in the application of artificial intelligence methods in biomedical research. In 2018, the Institute has created a Department of Computational Biology to strengthen its expertise in the analysis of […]

Former or Completed Projects & softwares

Mapping Receptor Dynamics In Synapses

This project aims at understanding the synaptic environment at the single receptor scale. Now that large amounts of dynamical single molecule data are available and that single molecule science is slowly transitioning into a big […]

TRamWAy

Single-molecule localization microscopy (SMLM) allows studying the dynamics of molecules in cells and resolving the biophysical properties that underlie cellular function. With the continuously growing amount of data produced by every single experiment, the […]

DIVA — Data Integration and Visualisation in Augmented and Virtual Environments

A Unique Software Platform for Complex Image Analysis Using Virtual Reality         DIVA (Data Integration and Visualization in Augmented and Virtual Environments)  is a software platform jointly developed by the Decision and Bayesian […]

DIVA microscopy

DIVA is a software platform that enhances the analysis of biomedical and microscopy images using virtual reality. It virtually places users inside rich 3D environments based on their experimentally acquired imaging data. Highly interactive, it […]

Congenital heart disease

  Congenital heart surgery is a challenging surgical disciplines due to the broad spectrum of conditions and high variability of patient anatomies. Extensive understanding of the complex spatial relationship between anatomical structures is mandatory […]

Semi-automatic transfer function for virtual reality

Genuage platform

Genuage is a new open-source software platform, that enables the easy perception of, interaction with and analysis of multidimensional point clouds in virtual reality. Genuage is compatible with arbitrary multidimensional data and allows easy […]

Escale syncing software

InferenceMAP

InferenceMAP  is a software aimed at analysing single molecule dynamics. InferenceMAP is based on Bayesian analysis of Random Walks and this version is focused on mapping Random Walks at the full cell scale in […]

Pictures & Media

Chloe Barre’s interventions during the round table about Neuro and AI at C-brain inauguration day.

 

From left to right: Alain Destexhe, Chloé Barre, Brice Bathellier,Joelle Barral et  AlAlexandre Gramfort

Imabio Workshop: Image Treatment in Virtual Reality

Visualisation and Analysis of Large Microscopy Images in Virtual Reality

The beginning of DIVA 

Colloque Génération IA 2030

Surgery planning with Virtual Reality and Machine learning

 

Contact

for inquiries and open positions please write to dbc-epi-recrutement at pasteur dot fr