• 2022
  Pommier JD, Gorman C, Crabol Y, Bleakley K, Sothy H, Santy K, Tran HTT, Nguyen LV, Bunnakea E, Hlaing CS, Aye AMM, Cappelle J, Herrant M, Piola P, Rosset B, Chevalier V, Tarantola A, Channa M, Honnorat J, Pinto AL, Rattanavong S, Vongsouvath M, Mayxay M, Phangmanixay S, Phongsavath K, Tin OS, Kyaw LL, Tin HH, Linn K, Tran TMH, Pérot P, Thuy NTT, Hien N, Phan PH, Buchy P, Dussart P, Laurent D, Eloit M, Dubot-Pérès A, Lortholary O, de Lamballerie X, Newton PN, Lecuit M, , , Childhood encephalitis in the Greater Mekong region (the SouthEast Asia Encephalitis Project): a multicentre prospective study., Lancet Glob Health 2022 Jul; 10(7): e989-e1002.
• 2022
  Temmam S, Vongphayloth K, Salazar EB, Munier S, Bonomi M, Regnault B, Douangboubpha B, Karami Y, Chrétien D, Sanamxay D, Xayaphet V, Paphaphanh P, Lacoste V, Somlor S, Lakeomany K, Phommavanh N, Pérot P, Dehan O, Amara F, Donati F, Bigot T, Nilges M, Rey FA, van der Werf S, Brey PT, Eloit M, , Bat coronaviruses related to SARS-CoV-2 and infectious for human cells., Nature 2022 604, 330–336.
• 2021
  Regnault B, Evrard B, Plu I, Dacheux L, Troadec E, Cozette P, Chrétien D, Duchesne M, Jean-Michel V, Jamet A, Leruez M, Pérot P, Bourhy H, Eloit M, Seilhean D, , First case of lethal encephalitis in Western Europe due to European bat lyssavirus type 1., Clin Infect Dis 2021 May; (): .
• 2021
  Fontanet A, Tondeur L, Grant R, Temmam S, Madec Y, Bigot T, Grzelak L, Cailleau I, Besombes C, Ungeheuer MN, Renaudat C, Perlaza BL, Arowas L, Jolly N, Pellerin SF, Kuhmel L, Staropoli I, Huon C, Chen KY, Crescenzo-Chaigne B, Munier S, Charneau P, Demeret C, Bruel T, Eloit M, Schwartz O, Hoen B, , SARS-CoV-2 infection in schools in a northern French city: a retrospective serological cohort study in an area of high transmission, France, January to April 2020., Euro Surveill 2021 04; 26(15): .
• 2020
  Grzelak L, Temmam S, Planchais C, Demeret C, Tondeur L, Huon C, Guivel-Benhassine F, Staropoli I, Chazal M, Dufloo J, Planas D, Buchrieser J, Rajah MM, Robinot R, Porrot F, Albert M, Chen KY, Crescenzo-Chaigne B, Donati F, Anna F, Souque P, Gransagne M, Bellalou J, Nowakowski M, Backovic M, Bouadma L, Le Fevre L, Le Hingrat Q, Descamps D, Pourbaix A, Laouénan C, Ghosn J, Yazdanpanah Y, Besombes C, Jolly N, Pellerin-Fernandes S, Cheny O, Ungeheuer MN, Mellon G, Morel P, Rolland S, Rey FA, Behillil S, Enouf V, Lemaitre A, Créach MA, Petres S, Escriou N, Charneau P, Fontanet A, Hoen B, Bruel T, Eloit M, Mouquet H, Schwartz O, van der Werf S, , A comparison of four serological assays for detecting anti-SARS-CoV-2 antibodies in human serum samples from different populations., Sci Transl Med 2020 09; 12(559): .
• 2020
  Pérot P, Falguieres M, Arowas L, Laude H, Foy JP, Goudot P, Corre-Catelin N, Ungeheuer MN, Caro V, Heard I, Eloit M, Gessain A, Bertolus C, Berthet N, Investigation of viral etiology in potentially malignant disorders and oral squamous cell carcinomas in non-smoking, non-drinking patients, PLoS ONE 2020;15(4):e0232138.
• 2019
  Pérot P, Biton A, Marchetta J, Pourcelot AG, Nazac A, Marret H, Hébert T, Chrétien D, Demazoin MC, Falguières M, Arowas L, Laude H, Heard I, Eloit M, Broad-Range Papillomavirus Transcriptome as a Biomarker of Papillomavirus-Associated Cervical High-Grade Cytology, J Mol Diagn 2019 Sep;21(5):768-781.
• 2019
  Du-Thanh A, Pérot P, Foulongne V, Dereure O, Guillot B, Eloit M, No evidence for viral transcripts in dermatofibrosarcoma protuberans, Br. J. Dermatol. 2019 Sep;181(3):634-636.
• 2019
  Cheval J, Muth E, Gonzalez G, Coulpier M, Beurdeley P, Cruveiller S, Eloit M, Adventitious Virus Detection in Cells by High-Throughput Sequencing of Newly Synthesized RNAs: Unambiguous Differentiation of Cell Infection from Carryover of Viral Nucleic Acids, mSphere 2019 06;4(3).
• 2019
  Leclerc-Mercier S, Moshous D, Neven B, Mahlaoui N, Martin L, Pellier I, Blanche S, Picard C, Fischer A, Perot P, Eloit M, Fraitag S, Bodemer C, Cutaneous granulomas with primary immunodeficiency in children: a report of 17 new patients and a review of the literature, J Eur Acad Dermatol Venereol 2019 Jul;33(7):1412-1420.
• 2019
  Brussel A, Brack K, Muth E, Zirwes R, Cheval J, Hebert C, Charpin JM, Marinaci A, Flan B, Ruppach H, Beurdeley P, Eloit M, Use of a new RNA next generation sequencing approach for the specific detection of virus infection in cells, Biologicals 2019 May;59:29-36.
• 2019
  Perelygina L, Buchbinder D, Dorsey MJ, Eloit M, Hauck F, Hautala T, Moshous D, Uriarte I, Deripapa E, Icenogle J, Sullivan KE, Outcomes for Nitazoxanide Treatment in a Case Series of Patients with Primary Immunodeficiencies and Rubella Virus-Associated Granuloma, J. Clin. Immunol. 2019 01;39(1):112-117.
• 2019
  Haddad-Boubaker S, Joffret ML, Pérot P, Bessaud M, Meddeb Z, Touzi H, Delpeyroux F, Triki H, Eloit M, Metagenomic analysis identifies human adenovirus 31 in children with acute flaccid paralysis in Tunisia, Arch. Virol. 2019 Mar;164(3):747-755.
• 2019
  Buchbinder D, Hauck F, Albert MH, Rack A, Bakhtiar S, Shcherbina A, Deripapa E, Sullivan KE, Perelygina L, Eloit M, Neven B, Pérot P, Moshous D, Suarez F, Bodemer C, Bonilla FA, Vaz LE, Krol AL, Klein C, Seppanen M, Nugent DJ, Singh J, Ochs HD, Rubella Virus-Associated Cutaneous Granulomatous Disease: a Unique Complication in Immune-Deficient Patients, Not Limited to DNA Repair Disorders, J. Clin. Immunol. 2019 01;39(1):81-89.
• 2018
  Ng SH, Braxton C, Eloit M, Feng SF, Fragnoud R, Mallet L, Mee ET, Sathiamoorthy S, Vandeputte O, Khan AS, Current Perspectives on High-Throughput Sequencing (HTS) for Adventitious Virus Detection: Upstream Sample Processing and Library Preparation, Viruses 2018 10;10(10).
• 2018
  Phan NT, Gouilh MA, Paireau J, Phuong L, Cheval J, Ngu ND, Hébert C, Nguyen TH, Lortholary O, Tondeur L, Manuguerra JC, Barouki R, Sander J, Janzen N, Nguyen HT, Brey PT, Fontanet A, Eloit M, Hypoglycemic Toxins and Enteroviruses as Causes of Outbreaks of Acute Encephalitis-Like Syndrome in Children, Bac Giang Province, Northern Vietnam, Emerging Infect. Dis. 2018 08;24(8):1435-1443.
• 2018
  Eiden M, Gil P, Ziegler U, Rakotoarivony I, Marie A, Frances B, L'Ambert G, Simonin Y, Foulongne V, Groschup MH, Gutierrez S, Eloit M, Emergence of two Usutu virus lineages in Culex pipiens mosquitoes in the Camargue, France, 2015, Infect. Genet. Evol. 2018 07;61:151-154.
• 2017
  Comoy EE, Mikol J, Jaffré N, Lebon V, Levavasseur E, Streichenberger N, Sumian C, Perret-Liaudet A, Eloit M, Andreoletti O, Haïk S, Hantraye P, Deslys JP, Experimental transfusion of variant CJD-infected blood reveals previously uncharacterised prion disorder in mice and macaque, Nat Commun 2017 11;8(1):1268.
• 2017
  Du-Thanh A, Dereure O, Cheval J, Dumarest M, Al-Shikhley L, Girard C, Guillot B, Eloit M, No Viral Transcripts Associated with Folliculotropic Mycosis Fungoides Using a High Throughput Sequencing Approach, Acta Derm. Venereol. 2017 Oct;97(9):1125-1126.
• 2017
  Parize P, Muth E, Richaud C, Gratigny M, Pilmis B, Lamamy A, Mainardi JL, Cheval J, de Visser L, Jagorel F, Ben Yahia L, Bamba G, Dubois M, Join-Lambert O, Leruez-Ville M, Nassif X, Lefort A, Lanternier F, Suarez F, Lortholary O, Lecuit M, Eloit M, , Untargeted next-generation sequencing-based first-line diagnosis of infection in immunocompromised adults: a multicentre, blinded, prospective study., Clin Microbiol Infect 2017 Aug; 23(8): 574.e1-574.e6.
• 2017
  Horwood PF, Duong V, Laurent D, Mey C, Sothy H, Santy K, Richner B, Heng S, Hem S, Cheval J, Gorman C, Dussart P, de Jong MD, Kerleguer A, Guillard B, Murgue B, Lecuit M, de Lamballerie X, Farrar JJ, Tarantola A, Eloit M, Buchy P, , Aetiology of acute meningoencephalitis in Cambodian children, 2010-2013., Emerg Microbes Infect 2017 May; 6(5): e35.
• 2017
  Zaulet M, Petrovan V, Birladeanu AM, Stoian AMM, Kevorkian SEM, Nichita C, Eloit M, Buburuzan L, Identification and prevalence of swine pasivirus 1 in eastern Romanian pig farms, J. Vet. Diagn. Invest. 2017 May;29(3):305-311.
• 2017
  Pérot P, Lecuit M, Eloit M, , Astrovirus Diagnostics., Viruses 2017 01; 9(1): .
• 2017
  Neven B, Pérot P, Bruneau J, Pasquet M, Ramirez M, Diana JS, Luzi S, Corre-Catelin N, Chardot C, Moshous D, Leclerc Mercier S, Mahlaoui N, Aladjidi N, Le Bail B, Lecuit M, Bodemer C, Molina TJ, Blanche S, Eloit M, , Cutaneous and Visceral Chronic Granulomatous Disease Triggered by a Rubella Virus Vaccine Strain in Children With Primary Immunodeficiencies., Clin Infect Dis 2017 Jan; 64(1): 83-86.
• 2016
  Duong V, Mey C, Eloit M, Zhu H, Danet L, Huang Z, Zou G, Tarantola A, Cheval J, Perot P, Laurent D, Richner B, Ky S, Heng S, Touch S, Sovann L, van Doorn R, Tan Tran T, Farrar JJ, Wentworth DE, Das SR, Stockwell TB, Manuguerra JC, Delpeyroux F, Guan Y, Altmeyer R, Buchy P, Molecular epidemiology of human enterovirus 71 at the origin of an epidemic of fatal hand, foot and mouth disease cases in Cambodia, Emerg Microbes Infect 2016 Sep;5(9):e104.
• 2016
  Blasdell KR, Duong V, Eloit M, Chretien F, Ly S, Hul V, Deubel V, Morand S, Buchy P, Evidence of human infection by a new mammarenavirus endemic to Southeastern Asia, Elife 2016 06;5.
• 2016
  Sauvage V, Laperche S, Cheval J, Muth E, Dubois M, Boizeau L, Hébert C, Lionnet F, Lefrère JJ, Eloit M, Viral metagenomics applied to blood donors and recipients at high risk for blood-borne infections, Blood Transfus 2016 09;14(5):400-7.
• 2016
  Moutailler S, Popovici I, Devillers E, Vayssier-Taussat M, Eloit M, Diversity of viruses in Ixodes ricinus, and characterization of a neurotropic strain of Eyach virus, New Microbes New Infect 2016 May;11:71-81.
• 2016
  Sauvage V, Eloit M, Viral metagenomics and blood safety, Transfus Clin Biol 2016 Feb;23(1):28-38.
• 2015
  Frémond ML, Pérot P, Muth E, Cros G, Dumarest M, Mahlaoui N, Seilhean D, Desguerre I, Hébert C, Corre-Catelin N, Neven B, Lecuit M, Blanche S, Picard C, Eloit M, , Next-Generation Sequencing for Diagnosis and Tailored Therapy: A Case Report of Astrovirus-Associated Progressive Encephalitis., J Pediatric Infect Dis Soc 2015 Sep; 4(3): e53-7.
• 2015
  Razzauti M, Galan M, Bernard M, Maman S, Klopp C, Charbonnel N, Vayssier-Taussat M, Eloit M, Cosson JF, A Comparison between Transcriptome Sequencing and 16S Metagenomics for Detection of Bacterial Pathogens in Wildlife, PLoS Negl Trop Dis 2015;9(8):e0003929.
• 2015
  Denesvre C, Dumarest M, Rémy S, Gourichon D, Eloit M, Chicken skin virome analyzed by high-throughput sequencing shows a composition highly different from human skin, Virus Genes 2015 Oct;51(2):209-16.
• 2015
  Arnold F, Hober D, Chaussade H, Dumarest M, Sané F, Nowakowsjki M, Rigaud E, Bellalou J, Desailloud R, Coursaget P, Eloit M, Antibodies to VP1 of swine pasivirus in humans without evidence of transmission from a pig source, J. Clin. Virol. 2015 Aug;69:36-9.
• 2015
  Scordel C, Huttin A, Cochet-Bernoin M, Szelechowski M, Poulet A, Richardson J, Benchoua A, Gonzalez-Dunia D, Eloit M, Coulpier M, Borna disease virus phosphoprotein impairs the developmental program controlling neurogenesis and reduces human GABAergic neurogenesis, PLoS Pathog. 2015 Apr;11(4):e1004859.
• 2015
  Vayssier-Taussat M, Cosson JF, Degeilh B, Eloit M, Fontanet A, Moutailler S, Raoult D, Sellal E, Ungeheuer MN, Zylbermann P, How a multidisciplinary ‘One Health’ approach can combat the tick-borne pathogen threat in Europe, Future Microbiol 2015;10(5):809-18.
• 2015
  Lecuit M, Eloit M, , The potential of whole genome NGS for infectious disease diagnosis., Expert Rev Mol Diagn 2015 ; 15(12): 1517-9.
• 2014
  Dumarest M, Muth E, Cheval J, Gratigny M, Hébert C, Gagnieur L, Eloit M, Viral diversity in swine intestinal mucus used for the manufacture of heparin as analyzed by high-throughput sequencing, Biologicals 2015 Jan;43(1):31-6.
• 2014
  Cabannes E, Hébert C, Eloit M, Whole genome: next-generation sequencing as a virus safety test for biotechnological products, PDA J Pharm Sci Technol 2014 Nov-Dec;68(6):631-8.
• 2014
  Gagnieur L, Cheval J, Cochet M, Breard E, Gratigny M, Hébert C, Muth E, Viarouge C, Dumarest M, Coulpier M, Eloit M, Analysis by high throughput sequencing of Specific Pathogen Free eggs, Biologicals 2014 Jul;42(4):218-9.
• 2014
  Bonnet S, Michelet L, Moutailler S, Cheval J, Hébert C, Vayssier-Taussat M, Eloit M, Identification of parasitic communities within European ticks using next-generation sequencing, PLoS Negl Trop Dis 2014 Mar;8(3):e2753.
• 2014
  Gagnieur L, Cheval J, Gratigny M, Hébert C, Muth E, Dumarest M, Eloit M, Unbiased analysis by high throughput sequencing of the viral diversity in fetal bovine serum and trypsin used in cell culture, Biologicals 2014 May;42(3):145-52.
• 2014
  Bodemer C, Sauvage V, Mahlaoui N, Cheval J, Couderc T, Leclerc-Mercier S, Debré M, Pellier I, Gagnieur L, Fraitag S, Fischer A, Blanche S, Lecuit M, Eloit M, Live rubella virus vaccine long-term persistence as an antigenic trigger of cutaneous granulomas in patients with primary immunodeficiency, Clin. Microbiol. Infect. 2014 Oct;20(10):O656-63.
• 2013
  Vayssier-Taussat M, Moutailler S, Michelet L, Devillers E, Bonnet S, Cheval J, Hébert C, Eloit M, Next generation sequencing uncovers unexpected bacterial pathogens in ticks in western Europe, PLoS ONE 2013;8(11):e81439.
• 2013
  Le Poder S, Pham-Hung d'Alexandry d'Orangiani AL, Duarte L, Fournier A, Horhogea C, Pinhas C, Vabret A, Eloit M, Infection of cats with atypical feline coronaviruses harbouring a truncated form of the canine type I non-structural ORF3 gene, Infect. Genet. Evol. 2013 Dec;20:488-94.
• 2013
  Lecuit M, Eloit M, , The human virome: new tools and concepts., Trends Microbiol 2013 Oct; 21(10): 510-5.
• 2013
  Bernardo P, Albina E, Eloit M, Roumagnac P, [Pathology and viral metagenomics, a recent history], Med Sci (Paris) 2013 May;29(5):501-8.
• 2012
  Paduraru OA, Buffet JP, Cote M, Bonnet S, Moutailler S, Paduraru V, Femenia F, Eloit M, Savuta G, Vayssier-Taussat M, Zoonotic transmission of pathogens by Ixodes ricinus ticks, Romania, Emerging Infect. Dis. 2012 Dec;18(12):2089-90.
• 2012
  Dereure O, Cheval J, Du Thanh A, Pariente K, Sauvage V, Manuguerra JC, Caro V, Foulongne V, Eloit M, No evidence for viral sequences in mycosis fungoides and Sézary syndrome skin lesions: a high-throughput sequencing approach, J. Invest. Dermatol. 2013 Mar;133(3):853-5.
• 2012
  Sauvage V, Ar Gouilh M, Cheval J, Muth E, Pariente K, Burguiere A, Caro V, Manuguerra JC, Eloit M, A member of a new Picornaviridae genus is shed in pig feces, J. Virol. 2012 Sep;86(18):10036-46.
• 2012
  Foulongne V, Sauvage V, Hebert C, Dereure O, Cheval J, Gouilh MA, Pariente K, Segondy M, Burguière A, Manuguerra JC, Caro V, Eloit M, Human skin microbiota: high diversity of DNA viruses identified on the human skin by high throughput sequencing, PLoS ONE 2012;7(6):e38499.
• 2012
  Maggi F, Macera L, Focosi D, Vatteroni ML, Boggi U, Antonelli G, Eloit M, Pistello M, Human gyrovirus DNA in human blood, Italy, Emerging Infect. Dis. 2012 Jun;18(6):956-9.
• 2012
  Bouquet J, Cheval J, Rogée S, Pavio N, Eloit M, Identical consensus sequence and conserved genomic polymorphism of hepatitis E virus during controlled interspecies transmission, J. Virol. 2012 Jun;86(11):6238-45.
• 2011
  Brnic D, Stevanovic V, Cochet M, Agier C, Richardson J, Montero-Menei CN, Milhavet O, Eloit M, Coulpier M, Borna disease virus infects human neural progenitor cells and impairs neurogenesis, J. Virol. 2012 Mar;86(5):2512-22.
• 2011
  Cheval J, Sauvage V, Frangeul L, Dacheux L, Guigon G, Dumey N, Pariente K, Rousseaux C, Dorange F, Berthet N, Brisse S, Moszer I, Bourhy H, Manuguerra CJ, Lecuit M, Burguiere A, Caro V, Eloit M, , Evaluation of high-throughput sequencing for identifying known and unknown viruses in biological samples., J Clin Microbiol 2011 Sep; 49(9): 3268-75.
• 2011
  Buckwalter MR, Nga PT, Gouilh MA, Fiette L, Bureau JF, Laird ME, Buchrieser J, Ozden S, Cheval J, Eloit M, Manuguerra JC, Gessain A, Brey PT, Fontanet A, Albert ML, Identification of a novel neuropathogenic Theiler’s murine encephalomyelitis virus, J. Virol. 2011 Jul;85(14):6893-905.