• 2023
  Auria E, Hunault L, England P, Monot M, Pipoli Da Fonseca J, Matondo M, Duchateau M, Tremblay YDN, Dupuy B, , The cell wall lipoprotein CD1687 acts as a DNA binding protein during deoxycholate-induced biofilm formation in Clostridioides difficile., NPJ Biofilms Microbiomes 2023 May; 9(1): 24.
• 2023
  Soraya Matczak, Valérie Bouchez, Pauline Leroux, Thibaut Douché, Nils Collinet, Annie Landier, Quentin Giai Gianetto, Sophie Guillot, Julia Chamot-Rooke, Milena Hasan, Mariette Matondo, Sylvain Brisse, Julie Toubiana, Biological differences between FIM2 and FIM3 fimbriae of Bordetella pertussis: not just the serotype, Microbes and Infection, 2023, pp.105152. ⟨10.1016/j.micinf.2023.105152⟩.
• 2023
  Lê-Bury P, Druart K, Savin C, Lechat P, Mas Fiol G, Matondo M, Bécavin C, Dussurget O, Pizarro-Cerdá J, Yersiniomics, a Multi-Omics Interactive Database for Yersinia Species., Microbiol Spectr 2023 Feb; (): e0382622.
• 2023
  Nardella F, Dobrescu I, Hassan H, Rodrigues F, Thiberge S, Mancio-Silva L, Tafit A, Jallet C, Cadet-Daniel V, Goussin S, Lorthiois A, Menon Y, Molinier N, Pechalrieu D, Long C, Sautel F, Matondo M, Duchateau M, Médard G, Witkowski B, Scherf A, Halby L, Arimondo PB , Hemisynthetic alkaloids derived from trilobine are antimalarials with sustained activity in multidrug-resistant Plasmodium falciparum., iScience 2023 Feb; 26(2): 105940.
• 2023
  Gedeon A, Karimova G, Ayoub N, Dairou J, Giai Gianetto Q, Vichier-Guerre S, Vidalain PO, Ladant D, Munier-Lehmann H, Interaction network among de novo purine nucleotide biosynthesis enzymes in Escherichia coli., FEBS J 2023 Feb; (): .
• 2023
  Sternke-Hoffmann R, Pauly T, Norrild RK, Hansen J, Tucholski F, Høie MH, Marcatili P, Dupré M, Duchateau M, Rey M, Malosse C, Metzger S, Boquoi A, Platten F, Egelhaaf SU, Chamot-Rooke J, Fenk R, Nagel-Steger L, Haas R, Buell AK, , Widespread amyloidogenicity potential of multiple myeloma patient-derived immunoglobulin light chains., BMC Biol 2023 Feb; 21(1): 21.
• 2022
  Donnarumma E, Kohlhaas M, Vimont E, Kornobis E, Chaze T, Gianetto QG, Matondo M, Moya-Nilges M, Maack C, Wai T, , Mitochondrial Fission Process 1 controls inner membrane integrity and protects against heart failure., Nat Commun 2022 Nov; 13(1): 6634.
• 2022
  Kumar S, Schmitt C, Gorgette O, Marbouty M, Duchateau M, Giai Gianetto Q, Matondo M, Guigner JM, De Reuse H, , Bacterial Membrane Vesicles as a Novel Strategy for Extrusion of Antimicrobial Bismuth Drug in Helicobacter pylori., mBio 2022 Oct; 13(5): e0163322.
• 2022
  Transito Garcia-Garcia* , Thibaut Douché* , Quentin Giai Gianetto , Sandrine Poncet , Nesrine El Omrani , Wiep Klaas Smits, Elodie Cuenot , Mariette Matondo # , Isabelle Martin-Verstraete #, In-depth characterization of the Clostridioides difficile phosphoproteome to identify Ser/Thr kinase substrates, Mol Cell Proteomics .
• 2022
  Mariette Matondo , Guillaume Dumas , Erik Maronde, Analysis of the Human Pineal Proteome by Mass Spectrometry, Methods Mol Biol .
• 2022
  Garcia-Garcia T, Douché T, Gianetto QG, Poncet S, El Omrani N, Smits WK, Cuenot E, Matondo M, Martin-Verstraete I, , In-depth characterization of the Clostridioides difficile phosphoproteome to identify Ser/Thr kinase substrates., Mol Cell Proteomics 2022 Oct; (): 100428.
• 2022
  Bernard C, Locard-Paulet M, Noël C, Duchateau M, Giai Gianetto Q, Moumen B, Rattei T, Hechard Y, Jensen LJ, Matondo M, Samba-Louaka A, , A time-resolved multi-omics atlas of Acanthamoeba castellanii encystment., Nat Commun 2022 Jul; 13(1): 4104.
• 2022
  von Joest M, Chen C, Douché T, Chantrel J, Chiche A, Gianetto QG, Matondo M, Li H, , Amphiregulin mediates non-cell-autonomous effect of senescence on reprogramming., Cell Rep 2022 Jul; 40(2): 111074.
• 2022
  Leseigneur C, Boucontet L, Duchateau M, Pizarro-Cerda J, Matondo M, Colucci-Guyon E, Dussurget O, , NAD kinase promotes Staphylococcus aureus pathogenesis by supporting production of virulence factors and protective enzymes., Elife 2022 Jun; 11(): .
• 2022
  Azevedo R, Jacquemin C, Villain N, Fenaille F, Lamari F, Becher F, , Mass Spectrometry for Neurobiomarker Discovery: The Relevance of Post-Translational Modifications., Cells 2022 Apr; 11(8): .
• 2022
  Si Y, Bon C, Barbachowska M, Cadet-Daniel V, Jallet C, Soresinetti L, Boullé M, Duchateau M, Matondo M, Agou F, Halby L, Arimondo PB, , A novel screening strategy to identify histone methyltransferase inhibitors reveals a crosstalk between DOT1L and CARM1., RSC Chem Biol 2022 Apr; 3(4): 456-467.
• 2022
  Piel L, Rajan KS, Bussotti G, Varet H, Legendre R, Proux C, Douché T, Giai-Gianetto Q, Chaze T, Cokelaer T, Vojtkova B, Gordon-Bar N, Doniger T, Cohen-Chalamish S, Rengaraj P, Besse C, Boland A, Sadlova J, Deleuze JF, Matondo M, Unger R, Volf P, Michaeli S, Pescher P, Späth GF, , Experimental evolution links post-transcriptional regulation to Leishmania fitness gain., PLoS Pathog 2022 Mar; 18(3): e1010375.
• 2022
  Gaiteiro C, Soares J, Relvas-Santos M, Peixoto A, Ferreira D, Paulo P, Brandão A, Fernandes E, Azevedo R, Palmeira C, Freitas R, Miranda A, Osório H, Prieto J, Lima L, Silva AMN, Santos LL, Ferreira JA, , Glycoproteogenomics characterizes the CD44 splicing code associated with bladder cancer invasion., Theranostics 2022 ; 12(7): 3150-3177.
• 2021
  Virginie Stévenin, Quentin Giai Gianetto, Magalie Duchateau, Mariette I Matondo, Jost Enninga, Yuen-Yan Chang, Purification of infection-associated macropinosomes by magnetic isolation for proteomic characterization, Nature Protocols, 2021, 16 (11), pp.5220-5249. ⟨10.1038/s41596-021-00610-5⟩.
• 2021
  Lisa MN, Sogues A, Barilone N, Baumgart M, Gil M, Graña M, Durán R, Biondi RM, Bellinzoni M, Bott M, Alzari PM, , A Tetratricopeptide Repeat Scaffold Couples Signal Detection to OdhI Phosphorylation in Metabolic Control by the Protein Kinase PknG., mBio 2021 Oct; 12(5): e0171721.
• 2021
  Rizzo J, Wong SSW, Gazi AD, Moyrand F, Chaze T, Commere PH, Novault S, Matondo M, Péhau-Arnaudet G, Reis FCG, Vos M, Alves LR, May RC, Nimrichter L, Rodrigues ML, Aimanianda V, Janbon G, , Cryptococcus extracellular vesicles properties and their use as vaccine platforms., J Extracell Vesicles 2021 08; 10(10): e12129.
• 2021
  Lima A, Leyva A, Rivera B, Portela MM, Gil M, Cascioferro A, Lisa MN, Wehenkel A, Bellinzoni M, Carvalho PC, Batthyány C, Alvarez MN, Brosch R, Alzari PM, Durán R, , Proteome remodeling in the Mycobacterium tuberculosis PknG knockout: Molecular evidence for the role of this kinase in cell envelope biogenesis and hypoxia response., J Proteomics 2021 Jul; 244(): 104276.
• 2021
  Peixoto A, Ferreira D, Azevedo R, Freitas R, Fernandes E, Relvas-Santos M, Gaiteiro C, Soares J, Cotton S, Teixeira B, Paulo P, Lima L, Palmeira C, Martins G, Oliveira MJ, Silva AMN, Santos LL, Ferreira JA, , Glycoproteomics identifies HOMER3 as a potentially targetable biomarker triggered by hypoxia and glucose deprivation in bladder cancer., J Exp Clin Cancer Res 2021 Jun; 40(1): 191.
• 2021
  Chiva C, Mendes Maia T, Panse C, Stejskal K, Douché T, Matondo M, Loew D, Helm D, Rettel M, Mechtler K, Impens F, Nanni P, Shevchenko A, Sabidó E, , Quality standards in proteomics research facilities: Common standards and quality procedures are essential for proteomics facilities and their users., EMBO Rep 2021 May; (): e52626.
• 2021
  Garcia-Garcia T, Poncet S, Cuenot E, Douché T, Giai Gianetto Q, Peltier J, Courtin P, Chapot-Chartier MP, Matondo M, Dupuy B, Candela T, Martin-Verstraete I, , Ser/Thr Kinase-Dependent Phosphorylation of the Peptidoglycan Hydrolase CwlA Controls Its Export and Modulates Cell Division in Clostridioides difficile., mBio 2021 May; 12(3): .
• 2021
  Tejada-Arranz A, Matos RG, Quentin Y, Bouilloux-Lafont M, Galtier E, Briolat V, Kornobis E, Douché T, Matondo M, Arraiano CM, Raynal B, De Reuse H, , RNase R is associated in a functional complex with the RhpA DEAD-box RNA helicase in Helicobacter pylori., Nucleic Acids Res 2021 49:5249-5264.
• 2021
  Injarabian L, Skerniskyte J, Giai Gianetto Q, Witko-Sarsat V, Marteyn BS, Reducing neutrophil exposure to oxygen allows their basal state maintenance, Immunol Cell Biol. 2021 Apr 3. .
• 2021
  Luk CH, Valenzuela C, Gil M, Swistak L, Bomme P, Chang YY, Mallet A, Enninga J, , Salmonella enters a dormant state within human epithelial cells for persistent infection., PLoS Pathog 2021 Apr; 17(4): e1009550.
• 2021
  Rey M, Dhenin J, Kong Y, Nouchikian L, Filella I, Duchateau M, Dupré M, Pellarin R, Duménil G, Chamot-Rooke J, , Advanced In Vivo Cross-Linking Mass Spectrometry Platform to Characterize Proteome-Wide Protein Interactions., Anal Chem 2021 Feb; (): .
• 2021
  Cotton S, Ferreira D, Soares J, Peixoto A, Relvas-Santos M, Azevedo R, Piairo P, Diéguez L, Palmeira C, Lima L, Silva AMN, Lara Santos L, Ferreira JA, , Target Score-A Proteomics Data Selection Tool Applied to Esophageal Cancer Identifies GLUT1-Sialyl Tn Glycoforms as Biomarkers of Cancer Aggressiveness., Int J Mol Sci 2021 Feb; 22(4): .
• 2021
  Meignié A, Combredet C, Santolini M, Kovács IA, Douché T, Gianetto QG, Eun H, Matondo M, Jacob Y, Grailhe R, Tangy F, Komarova AV, , Proteomic Analysis Uncovers Measles Virus Protein C Interaction with p65/iASPP Protein Complex., Mol Cell Proteomics 2021 Jan; (): 100049.
• 2021
  Genera M, Quioc-Salomon B, Nourisson A, Colcombet-Cazenave B, Haouz A, Mechaly A, Matondo M, Duchateau M, König A, Windisch MP, Neuveut C, Wolff N, Caillet-Saguy C, , Molecular basis of the interaction of the human tyrosine phosphatase PTPN3 with the hepatitis B virus core protein., Sci Rep 2021 Jan; 11(1): 944.
• 2021
  Valenzuela C, Gil M, Urrutia ÍM, Sabag A, Enninga J, Santiviago CA, , SopB- and SifA-dependent shaping of the Salmonella-containing vacuole proteome in the social amoeba Dictyostelium discoideum., Cell Microbiol 2021 Jan; 23(1): e13263.
• 2021
  Epelboin Y, Wang L, Giai Gianetto Q, Choumet V, Gaborit P, Issaly J, Guidez A, Douché T, Chaze T, Matondo M, Dusfour I, , CYP450 core involvement in multiple resistance strains of Aedes aegypti from French Guiana highlighted by proteomics, molecular and biochemical studies., PLoS One 2021 ; 16(1): e0243992.
• 2021
  Dellière S, Duchateau M, Wong SSW, Giai Gianetto Q, Guegan H, Matondo M, Gangneux JP, Aimanianda V, , Proteomic Analysis of Humoral Immune Components in Bronchoalveolar Lavage of Patients Infected or Colonized by Aspergillus fumigatus., Front Immunol 2021 ; 12(): 677798.
• 2020
  Lima DB, Dupré M, Duchateau M, Gianetto QG, Rey M, Matondo M, Chamot-Rooke J, , ProteoCombiner: integrating bottom-up with top-down proteomics data for improved proteoform assessment., Bioinformatics 2020 Nov; (): .
• 2020
  Dupré M, Duchateau M, Malosse C, Borges-Lima D, Calvaresi V, Podglajen I, Clermont D, Rey M, Chamot-Rooke J, , Optimization of a Top-Down Proteomics Platform for Closely Related Pathogenic Bacterial Discrimination., J Proteome Res 2020 Oct; (): .
• 2020
  More KR, Kaur I, Giai Gianetto Q, Invergo BM, Chaze T, Jain R, Huon C, Gutenbrunner P, Weisser H, Matondo M, Choudhary JS, Langsley G, Singh S, Chitnis CE, , Phosphorylation-Dependent Assembly of a 14-3-3 Mediated Signaling Complex during Red Blood Cell Invasion by Plasmodium falciparum Merozoites., mBio 2020 08; 11(4): .
• 2020
  Rizzo J, Chaze T, Miranda K, Roberson RW, Gorgette O, Nimrichter L, Matondo M, Latgé JP, Beauvais A, Rodrigues ML, , Characterization of Extracellular Vesicles Produced by Aspergillus fumigatus Protoplasts., mSphere 2020 08; 5(4): .
• 2020
  Aguilar-Rojas A, Castellanos-Castro S, Matondo M, Gianetto QG, Varet H, Sismeiro O, Legendre R, Fernandes J, Hardy D, Coppée JY, Olivo-Marin JC, Guillen N, , Insights into amebiasis using a human 3D-intestinal model., Cell Microbiol 2020 Aug; 22(8): e13203.
• 2020
  Chang YY, Stévenin V, Duchateau M, Giai Gianetto Q, Hourdel V, Rodrigues CD, Matondo M, Reiling N, Enninga J, , Shigella hijacks the exocyst to cluster macropinosomes for efficient vacuolar escape., PLoS Pathog 2020 08; 16(8): e1008822.
• 2020
  Legros V, Jeannin P, Burlaud-Gaillard J, Chaze T, Gianetto QG, Butler-Browne G, Mouly V, Zoladek J, Afonso PV, Gonzàlez MN, Matondo M, Riederer I, Roingeard P, Gessain A, Choumet V, Ceccaldi PE, , Differentiation-dependent susceptibility of human muscle cells to Zika virus infection., PLoS Negl Trop Dis 2020 08; 14(8): e0008282.
• 2020
  Silvia Castellanos-Castro, Arturo Aguilar-Rojas, Mariette Matondo, Quentin Gian Gianetto, Hugo Varet, Odile Sismeiro, Rachel Legendre, Julien Fernandes, David Hardy, Jean Yves Coppée, Jean Christophe Olivo-Marin, Nancy Guillen, Human Immune Response Triggered by Entamoeba histolytica in a 3D-Intestinal Model, Eukaryome Impact on Human Intestine Homeostasis and Mucosal Immunology. Springer, Cham.
• 2020
  Kühn S, Bergqvist J, Gil M, Valenzuela C, Barrio L, Lebreton S, Zurzolo C, Enninga J, , Actin Assembly around the Shigella-Containing Vacuole Promotes Successful Infection., Cell Rep 2020 May; 31(6): 107638.
• 2020
  Addi C, Presle A, Frémont S, Cuvelier F, Rocancourt M, Milin F, Schmutz S, Chamot-Rooke J, Douché T, Duchateau M, Giai Gianetto Q, Salles A, Ménager H, Matondo M, Zimmermann P, Gupta-Rossi N, Echard A, , The Flemmingsome reveals an ESCRT-to-membrane coupling via ALIX/syntenin/syndecan-4 required for completion of cytokinesis., Nat Commun 2020 04; 11(1): 1941.
• 2020
  Maffei B, Laverrière M, Wu Y, Triboulet S, Perrinet S, Duchateau M, Matondo M, Hollis RL, Gourley C, Rupp J, Keillor JW, Subtil A, , Infection-driven activation of transglutaminase 2 boosts glucose uptake and hexosamine biosynthesis in epithelial cells., EMBO J 2020 04; 39(8): e102166.
• 2020
  Fernandes E, Freitas R, Ferreira D, Soares J, Azevedo R, Gaiteiro C, Peixoto A, Oliveira S, Cotton S, Relvas-Santos M, Afonso LP, Palmeira C, Oliveira MJ, Ferreira R, Silva AMN, Lara Santos L, Ferreira JA, , Nucleolin-Sle A Glycoforms as E-Selectin Ligands and Potentially Targetable Biomarkers at the Cell Surface of Gastric Cancer Cells., Cancers (Basel) 2020 Apr; 12(4): .
• 2020
  Jabs S, Biton A, Bécavin C, Nahori MA, Ghozlane A, Pagliuso A, Spanò G, Guérineau V, Touboul D, Giai Gianetto Q, Chaze T, Matondo M, Dillies MA, Cossart P, , Impact of the gut microbiota on the m6A epitranscriptome of mouse cecum and liver., Nat Commun 2020 03; 11(1): 1344.
• 2020
  Özbaykal G, Wollrab E, Simon F, Vigouroux A, Cordier B, Aristov A, Chaze T, Matondo M, van Teeffelen S, , The transpeptidase PBP2 governs initial localization and activity of the major cell-wall synthesis machinery in E. coli., Elife 2020 Feb; 9(): .
• 2020
  Carvalho F, Spier A, Chaze T, Matondo M, Cossart P, Stavru F, , Listeria monocytogenes Exploits Mitochondrial Contact Site and Cristae Organizing System Complex Subunit Mic10 To Promote Mitochondrial Fragmentation and Cellular Infection., mBio 2020 02; 11(1): .
• 2020
  Vigouroux A, Cordier B, Aristov A, Alvarez L, Özbaykal G, Chaze T, Oldewurtel ER, Matondo M, Cava F, Bikard D, van Teeffelen S, , Class-A penicillin binding proteins do not contribute to cell shape but repair cell-wall defects., Elife 2020 Jan; 9(): .
• 2020
  Besson B, Basset J, Gatellier S, Chabrolles H, Chaze T, Hourdel V, Matondo M, Pardigon N, Choumet V, , Comparison of a human neuronal model proteome upon Japanese encephalitis or West Nile Virus infection and potential role of mosquito saliva in neuropathogenesis., PLoS One 2020 ; 15(5): e0232585.
• 2019
  Stévenin V, Chang YY, Le Toquin Y, Duchateau M, Gianetto QG, Luk CH, Salles A, Sohst V, Matondo M, Reiling N, Enninga J, , Dynamic Growth and Shrinkage of the Salmonella-Containing Vacuole Determines the Intracellular Pathogen Niche., Cell Rep 2019 12; 29(12): 3958-3973.e7.
• 2019
  Valsecchi I, Lai JI, Stephen-Victor E, Pillé A, Beaussart A, Lo V, Pham CLL, Aimanianda V, Kwan AH, Duchateau M, Gianetto QG, Matondo M, Lehoux M, Sheppard DC, Dufrene YF, Bayry J, Guijarro JI, Sunde M, Latgé JP, , Assembly and disassembly of Aspergillus fumigatus conidial rodlets., Cell Surf 2019 Dec; 5(): 100023.
• 2019
  Antoine Vigouroux, Baptiste Cordier, Andrey Aristov, Enno Oldewurtel, Gizem Özbaykal, Thibault Chaze, Mariette Matondo, David Bikard, Sven van Teeffelen, Cell-wall synthases contribute to bacterial cell-envelope integrity by actively repairing defects, bioRxiv.
• 2019
  Cuenot E, Garcia-Garcia T, Douche T, Gorgette O, Courtin P, Denis-Quanquin S, Hoys S, Tremblay YDN, Matondo M, Chapot-Chartier MP, Janoir C, Dupuy B, Candela T, Martin-Verstraete I, , The Ser/Thr Kinase PrkC Participates in Cell Wall Homeostasis and Antimicrobial Resistance in Clostridium difficile., Infect Immun 2019 08; 87(8): .
• 2019
  Wieczorek S, Giai Gianetto Q, Burger T, Five simple yet essential steps to correctly estimate the rate of false differentially abundant proteins in mass spectrometry analyses, Journal of Proteomics, 2019, 103441, ISSN 1874-3919..
• 2019
  Negro V, Krin E, Aguilar Pierlé S, Chaze T, Giai Gianetto Q, Kennedy SP, Matondo M, Mazel D, Baharoglu Z, , RadD Contributes to R-Loop Avoidance in Sub-MIC Tobramycin., mBio 2019 07; 10(4): .
• 2019
  Hommel B, Sturny-Leclère A, Volant S, Veluppillai N, Duchateau M, Yu CH, Hourdel V, Varet H, Matondo M, Perfect JR, Casadevall A, Dromer F, Alanio A, , Cryptococcus neoformans resists to drastic conditions by switching to viable but non-culturable cell phenotype., PLoS Pathog 2019 07; 15(7): e1007945.
• 2019
  O'Brien DP, Cannella SE, Voegele A, Raoux-Barbot D, Davi M, Douché T, Matondo M, Brier S, Ladant D, Chenal A, , Post-translational acylation controls the folding and functions of the CyaA RTX toxin., FASEB J 2019 09; 33(9): 10065-10076.
• 2019
  Valsecchi I, Dupres V, Michel JP, Duchateau M, Matondo M, Chamilos G, Saveanu C, Guijarro JI, Aimanianda V, Lafont F, Latgé JP, Beauvais A, , The puzzling construction of the conidial outer layer of Aspergillus fumigatus., Cell Microbiol 2019 05; 21(5): e12994.
• 2019
  Neves M, Azevedo R, Lima L, Oliveira MI, Peixoto A, Ferreira D, Soares J, Fernandes E, Gaiteiro C, Palmeira C, Cotton S, Mereiter S, Campos D, Afonso LP, Ribeiro R, Fraga A, Tavares A, Mansinho H, Monteiro E, Videira PA, Freitas PP, Reis CA, Santos LL, Dieguez L, Ferreira JA, , Exploring sialyl-Tn expression in microfluidic-isolated circulating tumour cells: A novel biomarker and an analytical tool for precision oncology applications., N Biotechnol 2019 Mar; 49(): 77-87.
• 2019
  Valsecchi I, Lai J, Stephen-Victor E, Pillé A, Beaussart A, Lo V, Pham C, Aimanianda V, Kwan A, Duchateau M, Giai Gianetto Q, Matondo M, Lehoux M, Sheppard D, Dufrene Y, Bayry J, Iñaki Guijarro J, Sunde M, Latgé J-P, Assembly and disassembly of Aspergillus fumigatus conidial rodlets, The Cell Surface (2019).
• 2019
  Alves Feliciano C, Douché T, Giai Gianetto Q, Matondo M, Martin-Verstraete I, Dupuy B, , CotL, a new morphogenetic spore coat protein of Clostridium difficile., Environ Microbiol 2019 03; 21(3): 984-1003.
• 2019
  Voegele A, Sadi M, Raoux-Barbot D, Douché T, Matondo M, Ladant D, Chenal A, , The Adenylate Cyclase (CyaA) Toxin from Bordetella pertussis Has No Detectable Phospholipase A (PLA) Activity In Vitro., Toxins (Basel) 2019 02; 11(2): .
• 2019
  Gil M, Lima A, Rivera B, Rossello J, Urdániz E, Cascioferro A, Carrión F, Wehenkel A, Bellinzoni M, Batthyány C, Pritsch O, Denicola A, Alvarez MN, Carvalho PC, Lisa MN, Brosch R, Piuri M, Alzari PM, Durán R, , New substrates and interactors of the mycobacterial Serine/Threonine protein kinase PknG identified by a tailored interactomic approach., J Proteomics 2019 Feb; 192(): 321-333.
• 2019
  Barkoff AM, Mertsola J, Pierard D, Dalby T, Hoegh SV, Guillot S, Stefanelli P, van Gent M, Berbers G, Vestrheim D, Greve-Isdahl M, Wehlin L, Ljungman M, Fry NK, Markey K, He Q, Pertactin-deficient Bordetella pertussis isolates: evidence of increased circulation in Europe, 1998 to 2015., Euro Surveill 2019 Feb; 24(7): .
• 2019
  Peixoto A, Relvas-Santos M, Azevedo R, Santos LL, Ferreira JA, , Protein Glycosylation and Tumor Microenvironment Alterations Driving Cancer Hallmarks., Front Oncol 2019 ; 9(): 380.
• 2018
  Rey M, Dupré M, Lopez-Neira I, Duchateau M, Chamot-Rooke J, , eXL-MS: An Enhanced Cross-Linking Mass Spectrometry Workflow To Study Protein Complexes., Anal Chem 2018 09; 90(18): 10707-10714.
• 2018
  Azevedo R, Soares J, Gaiteiro C, Peixoto A, Lima L, Ferreira D, Relvas-Santos M, Fernandes E, Tavares A, Cotton S, Daniel-da-Silva AL, Santos LL, Vitorino R, Amado F, Ferreira JA, , Glycan affinity magnetic nanoplatforms for urinary glycobiomarkers discovery in bladder cancer., Talanta 2018 Jul; 184(): 347-355.
• 2018
  Cintas C, Douché T, Therville N, Arcucci S, Ramos-Delgado F, Basset C, Thibault B, Guillermet-Guibert J, Signal-Targeted Therapies and Resistance Mechanisms in Pancreatic Cancer: Future Developments Reside in Proteomics, Cancers (Basel) 2018 Jun;10(6).
• 2018
  Azevedo R, Soares J, Peixoto A, Cotton S, Lima L, Santos LL, Ferreira JA, , Circulating tumor cells in bladder cancer: Emerging technologies and clinical implications foreseeing precision oncology., Urol Oncol 2018 May; 36(5): 221-236.
• 2018
  Pereira JM, Chevalier C, Chaze T, Gianetto Q, Impens F, Matondo M, Cossart P, Hamon MA, , Infection Reveals a Modification of SIRT2 Critical for Chromatin Association., Cell Rep 2018 04; 23(4): 1124-1137.
• 2018
  Anderson MC, Chaze T, Coïc YM, Injarabian L, Jonsson F, Lombion N, Selimoglu-Buet D, Souphron J, Ridley C, Vonaesch P, Baron B, Arena ET, Tinevez JY, Nigro G, Nothelfer K, Solary E, Lapierre V, Lazure T, Matondo M, Thornton D, Sansonetti PJ, Baleux F, Marteyn BS, , MUB40 Binds to Lactoferrin and Stands as a Specific Neutrophil Marker., Cell Chem Biol 2018 04; 25(4): 483-493.e9.
• 2018
  Jeannin P, Chaze T, Giai Gianetto Q, Matondo M, Gout O, Gessain A, Afonso PV, , Proteomic analysis of plasma extracellular vesicles reveals mitochondrial stress upon HTLV-1 infection., Sci Rep 2018 03; 8(1): 5170.
• 2018
  Azevedo R, Silva AMN, Reis CA, Santos LL, Ferreira JA, , In silico approaches for unveiling novel glycobiomarkers in cancer., J Proteomics 2018 Jan; 171(): 95-106.
• 2018
  Azevedo R, Gaiteiro C, Peixoto A, Relvas-Santos M, Lima L, Santos LL, Ferreira JA, , CD44 glycoprotein in cancer: a molecular conundrum hampering clinical applications., Clin Proteomics 2018 ; 15(): 22.
• 2017
  Lima L, Neves M, Oliveira MI, Dieguez L, Freitas R, Azevedo R, Gaiteiro C, Soares J, Ferreira D, Peixoto A, Fernandes E, Montezuma D, Tavares A, Ribeiro R, Castro A, Oliveira M, Fraga A, Reis CA, Santos LL, Ferreira JA, , Sialyl-Tn identifies muscle-invasive bladder cancer basal and luminal subtypes facing decreased survival, being expressed by circulating tumor cells and metastases., Urol Oncol 2017 Dec; 35(12): 675.e1-675.e8.
• 2017
  Azevedo R, Peixoto A, Gaiteiro C, Fernandes E, Neves M, Lima L, Santos LL, Ferreira JA, , Over forty years of bladder cancer glycobiology: Where do glycans stand facing precision oncology?, Oncotarget 2017 Oct; 8(53): 91734-91764.
• 2017
  Besson B, Sonthonnax F, Duchateau M, Ben Khalifa Y, Larrous F, Eun H, Hourdel V, Matondo M, Chamot-Rooke J, Grailhe R, Bourhy H, , Regulation of NF-κB by the p105-ABIN2-TPL2 complex and RelAp43 during rabies virus infection., PLoS Pathog 2017 Oct; 13(10): e1006697.
• 2017
  Bouchez V, Douché T, Dazas M, Delaplane S, Matondo M, Chamot-Rooke J, Guiso N, , Characterization of Post-Translational Modifications and Cytotoxic Properties of the Adenylate-Cyclase Hemolysin Produced by Various Bordetella pertussis and Bordetella parapertussis Isolates., Toxins (Basel) 2017 09; 9(10): .
• 2017
  Rossello J, Lima A, Gil M, Rodríguez Duarte J, Correa A, Carvalho PC, Kierbel A, Durán R, , The EAL-domain protein FcsR regulates flagella, chemotaxis and type III secretion system in Pseudomonas aeruginosa by a phosphodiesterase independent mechanism., Sci Rep 2017 Aug; 7(1): 10281.
• 2017
  Gil M, Enninga J, , Tracing a fat or sweet lifestyle – New insights on catabolic paths of intracellular Salmonella., Virulence 2017 Aug; 8(6): 655-657.
• 2017
  Prieto D, Sotelo N, Seija N, Sernbo S, Abreu C, Durán R, Gil M, Sicco E, Irigoin V, Oliver C, Landoni AI, Gabus R, Dighiero G, Oppezzo P, , S100-A9 protein in exosomes from chronic lymphocytic leukemia cells promotes NF-κB activity during disease progression., Blood 2017 Aug; 130(6): 777-788.
• 2017
  Cotton S, Azevedo R, Gaiteiro C, Ferreira D, Lima L, Peixoto A, Fernandes E, Neves M, Neves D, Amaro T, Cruz R, Tavares A, Rangel M, Silva AMN, Santos LL, Ferreira JA, , Targeted O-glycoproteomics explored increased sialylation and identified MUC16 as a poor prognosis biomarker in advanced-stage bladder tumours., Mol Oncol 2017 Aug; 11(8): 895-912.
• 2017
  Daniel I Poppleton, Magalie I Duchateau, Véronique I Hourdel, Mariette I Matondo, Jennifer I Flechsler, Andreas I Klingl, Christophe I Beloin, Simonetta I Gribaldo, Outer Membrane Proteome of Veillonella parvula: A Diderm Firmicute of the Human Microbiome, Frontiers in Microbiology, 2017, 8, pp.article 1215. ⟨10.3389/fmicb.2017.01215⟩.
• 2017
  Lago M, Monteil V, Douche T, Guglielmini J, Criscuolo A, Maufrais C, Matondo M, Norel F, , Proteome remodelling by the stress sigma factor RpoS/σS in Salmonella: identification of small proteins and evidence for post-transcriptional regulation., Sci Rep 2017 05; 7(1): 2127.
• 2017
  Duriez E, Masselon CD, Mesmin C, Court M, Demeure K, Allory Y, Malats N, Matondo M, Radvanyi F, Garin J, Domon B, Large-Scale SRM Screen of Urothelial Bladder Cancer Candidate Biomarkers in Urine, J. Proteome Res. 2017 04;16(4):1617-1631.
• 2017
  Folle AM, Kitano ES, Lima A, Gil M, Cucher M, Mourglia-Ettlin G, Iwai LK, Rosenzvit M, Batthyány C, Ferreira AM, , Characterisation of Antigen B Protein Species Present in the Hydatid Cyst Fluid of Echinococcus canadensis G7 Genotype., PLoS Negl Trop Dis 2017 Jan; 11(1): e0005250.
• 2016
  Matondo M, Marcellin M, Chaoui K, Bousquet-Dubouch MP, Gonzalez-de-Peredo A, Monsarrat B, Burlet-Schiltz O, Determination of differentially regulated proteins upon proteasome inhibition in AML cell lines by the combination of large-scale and targeted quantitative proteomics, Proteomics 2017 04;17(7).
• 2016
  Magliarelli HF, Matondo M, Mészáros G, Goginashvili A, Erbs E, Zhang Z, Mihlan M, Wolfrum C, Aebersold R, Sumara I, Ricci R, Liver ubiquitome uncovers nutrient-stress-mediated trafficking and secretion of complement C3, Cell Death Dis 2016 Oct;7(10):e2411.
• 2016
  Lima A, Bernardes M, Azevedo R, Seabra V, Medeiros R, , Moving toward personalized medicine in rheumatoid arthritis: SNPs in methotrexate intracellular pathways are associated with methotrexate therapeutic outcome., Pharmacogenomics 2016 Oct; 17(15): 1649-1674.
• 2016
  Peixoto A, Fernandes E, Gaiteiro C, Lima L, Azevedo R, Soares J, Cotton S, Parreira B, Neves M, Amaro T, Tavares A, Teixeira F, Palmeira C, Rangel M, Silva AM, Reis CA, Santos LL, Oliveira MJ, Ferreira JA, , Hypoxia enhances the malignant nature of bladder cancer cells and concomitantly antagonizes protein O-glycosylation extension., Oncotarget 2016 Sep; 7(39): 63138-63157.
• 2016
  Bailon H, León-Janampa N, Padilla C, Hozbor D, Increase in pertussis cases along with high prevalence of two emerging genotypes of Bordetella pertussis in Perú, 2012., BMC Infect Dis 2016 Aug; 16(): 422.
• 2016
  Demarta-Gatsi C, Smith L, Thiberge S, Peronet R, Commere PH, Matondo M, Apetoh L, Bruhns P, Ménard R, Mécheri S, , Protection against malaria in mice is induced by blood stage-arresting histamine-releasing factor (HRF)-deficient parasites., J Exp Med 2016 07; 213(8): 1419-28.
• 2016
  Segura I, Lange C, Knevels E, Moskalyuk A, Pulizzi R, Eelen G, Chaze T, Tudor C, Boulegue C, Holt M, Daelemans D, Matondo M, Ghesquière B, Giugliano M, Ruiz de Almodovar C, Dewerchin M, Carmeliet P, The Oxygen Sensor PHD2 Controls Dendritic Spines and Synapses via Modification of Filamin A, Cell Rep 2016 Mar;14(11):2653-67.
• 2015
  Gueguen C, Bouley J, Moussu H, Luce S, Duchateau M, Chamot-Rooke J, Pallardy M, Lombardi V, Nony E, Baron-Bodo V, Mascarell L, Moingeon P, , Changes in markers associated with dendritic cells driving the differentiation of either TH2 cells or regulatory T cells correlate with clinical benefit during allergen immunotherapy., J Allergy Clin Immunol 2016 Feb; 137(2): 545-58.
• 2015
  Azevedo R, Bernardes M, Fonseca J, Lima A, , Smartphone application for rheumatoid arthritis self-management: cross-sectional study revealed the usefulness, willingness to use and patients’ needs., Rheumatol Int 2015 Oct; 35(10): 1675-85.
• 2015
  Azevedo R, Ferreira JA, Peixoto A, Neves M, Sousa N, Lima A, Santos LL, , Emerging antibody-based therapeutic strategies for bladder cancer: A systematic review., J Control Release 2015 Sep; 214(): 40-61.
• 2015
  Surinova S, Choi M, Tao S, Schüffler PJ, Chang CY, Clough T, Vysloužil K, Khoylou M, Srovnal J, Liu Y, Matondo M, Hüttenhain R, Weisser H, Buhmann JM, Hajdúch M, Brenner H, Vitek O, Aebersold R, Prediction of colorectal cancer diagnosis based on circulating plasma proteins, EMBO Mol Med 2015 Sep;7(9):1166-78.
• 2015
  Santos JC, Duchateau M, Fredlund J, Weiner A, Mallet A, Schmitt C, Matondo M, Hourdel V, Chamot-Rooke J, Enninga J, , The COPII complex and lysosomal VAMP7 determine intracellular Salmonella localization and growth., Cell Microbiol 2015 Dec; 17(12): 1699-720.
• 2015
  Lima A, Bernardes M, Azevedo R, Medeiros R, Seabra V, , Pharmacogenomics of Methotrexate Membrane Transport Pathway: Can Clinical Response to Methotrexate in Rheumatoid Arthritis Be Predicted?, Int J Mol Sci 2015 Jun; 16(6): 13760-80.
• 2015
  Lisa MN, Gil M, André-Leroux G, Barilone N, Durán R, Biondi RM, Alzari PM, , Molecular Basis of the Activity and the Regulation of the Eukaryotic-like S/T Protein Kinase PknG from Mycobacterium tuberculosis., Structure 2015 Jun; 23(6): 1039-48.
• 2015
  Margenat M, Labandera AM, Gil M, Carrion F, Purificação M, Razzera G, Portela MM, Obal G, Terenzi H, Pritsch O, Durán R, Ferreira AM, Villarino A, , New potential eukaryotic substrates of the mycobacterial protein tyrosine phosphatase PtpA: hints of a bacterial modulation of macrophage bioenergetics state., Sci Rep 2015 Mar; 5(): 8819.
• 2015
  Azevedo AR, de Sousa HM, Monteiro JA, Lima AR, , Future perspectives of Smartphone applications for rheumatic diseases self-management., Rheumatol Int 2015 Mar; 35(3): 419-31.
• 2014
  Liu Y, Huang H, Liu P, Su X, Gao Z, Guo L, Zhang Y, [The status of pertussis infection and molecular epidemiological characteristics of pertussis in Tianjin, 2013]., Zhonghua Liu Xing Bing Xue Za Zhi 2014 Dec; 35(12): 1358-61.
• 2014
  Lima A, Bernardes M, Azevedo R, Monteiro J, Sousa H, Medeiros R, Seabra V, , SLC19A1, SLC46A1 and SLCO1B1 polymorphisms as predictors of methotrexate-related toxicity in Portuguese rheumatoid arthritis patients., Toxicol Sci 2014 Nov; 142(1): 196-209.
• 2014
  Chen Q, Boulanger A, Hinton DM, Stibitz S, Strong inhibition of fimbrial 3 subunit gene transcription by a novel downstream repressive element in Bordetella pertussis., Mol Microbiol 2014 Aug; 93(4): 748-58.
• 2014
  Heikkinen AT, Friedlein A, Matondo M, Hatley OJ, Petsalo A, Juvonen R, Galetin A, Rostami-Hodjegan A, Aebersold R, Lamerz J, Dunkley T, Cutler P, Parrott N, Quantitative ADME proteomics – CYP and UGT enzymes in the Beagle dog liver and intestine, Pharm. Res. 2015 Jan;32(1):74-90.
• 2014
  Randall LM, Manta B, Hugo M, Gil M, Batthyàny C, Trujillo M, Poole LB, Denicola A, , Nitration transforms a sensitive peroxiredoxin 2 into a more active and robust peroxidase., J Biol Chem 2014 May; 289(22): 15536-43.
• 2014
  Subota I, Julkowska D, Vincensini L, Reeg N, Buisson J, Blisnick T, Huet D, Perrot S, Santi-Rocca J, Duchateau M, Hourdel V, Rousselle JC, Cayet N, Namane A, Chamot-Rooke J, Bastin P, Proteomic analysis of intact flagella of procyclic Trypanosoma brucei cells identifies novel flagellar proteins with unique sub-localization and dynamics, Mol. Cell Proteomics 2014 Jul;13(7):1769-86.
• 2014
  Lima A, Bernardes M, Sousa H, Azevedo R, Costa L, Ventura F, Seabra V, Medeiros R, , SLC19A1 80G allele as a biomarker of methotrexate-related gastrointestinal toxicity in Portuguese rheumatoid arthritis patients., Pharmacogenomics 2014 Apr; 15(6): 807-20.
• 2014
  George Rosenberger , Ching Chiek Koh , Tiannan Guo , Hannes L. Röst, Petri Kouvonen, Ben C. Collins  , Moritz Heusel, Yansheng Liu  , Etienne Caron, Anton Vichalkovski , Marco Faini , Olga T. Schubert , Pouya Faridi , H. Alexander Ebhard , Mariette Matondo, Henry Lam , Samuel L. Bader , David S. Campbell, Eric W. Deutsch, Robert L. Morit , Stephen Tate & Ruedi Aebersold., A repository of assays to quantify 10,000 human proteins by SWATH-MS., Scientific Data 1 (Nature) Article number: 140031 (2014).
• 2014
  Lima A, Seabra V, Bernardes M, Azevedo R, Sousa H, Medeiros R, , Role of key TYMS polymorphisms on methotrexate therapeutic outcome in portuguese rheumatoid arthritis patients., PLoS One 2014 ; 9(10): e108165.
• 2014
  Lima A, Monteiro J, Bernardes M, Sousa H, Azevedo R, Seabra V, Medeiros R, , Prediction of methotrexate clinical response in Portuguese rheumatoid arthritis patients: implication of MTHFR rs1801133 and ATIC rs4673993 polymorphisms., Biomed Res Int 2014 ; 2014(): 368681.
• 2014
  Lima A, Sousa H, Monteiro J, Azevedo R, Medeiros R, Seabra V, , Genetic polymorphisms in low-dose methotrexate transporters: current relevance as methotrexate therapeutic outcome biomarkers., Pharmacogenomics 2014 ; 15(12): 1611-35.
• 2013
  Gil M, Graña M, Schopfer FJ, Wagner T, Denicola A, Freeman BA, Alzari PM, Batthyány C, Durán R, , Inhibition of Mycobacterium tuberculosis PknG by non-catalytic rubredoxin domain specific modification: reaction of an electrophilic nitro-fatty acid with the Fe-S center., Free Radic Biol Med 2013 Dec; 65(): 150-161.
• 2013
  Gerster S, Kwon T, Ludwig C, Matondo M, Vogel C, Marcotte EM, Aebersold R, Bühlmann P, Statistical approach to protein quantification, Mol. Cell Proteomics 2014 Feb;13(2):666-77.
• 2013
  Lima A, Azevedo R, Sousa H, Seabra V, Medeiros R, , Current approaches for TYMS polymorphisms and their importance in molecular epidemiology and pharmacogenetics., Pharmacogenomics 2013 Aug; 14(11): 1337-51.
• 2013
  Correia M, Michel V, Osório H, El Ghachi M, Bonis M, Boneca IG, De Reuse H, Matos AA, Lenormand P, Seruca R, Figueiredo C, Machado JC, Touati E., Crosstalk between Helicobacter pylori and gastric epithelial cells is impaired by docosahexaenoic acid., PLoS One. 2013;8(4):e60657. doi: 10.1371/journal.pone.0060657.
• 2011
  Polge C, Heng AE, Jarzaguet M, Ventadour S, Claustre A, Combaret L, Béchet D, Matondo M, Uttenweiler-Joseph S, Monsarrat B, Attaix D, Taillandier D, Muscle actin is polyubiquitinylated in vitro and in vivo and targeted for breakdown by the E3 ligase MuRF1, FASEB J. 2011 Nov;25(11):3790-802.
• 2011
  Selevsek N, Matondo M, Sanchez Carbayo M, Aebersold R, Domon B, Systematic quantification of peptides/proteins in urine using selected reaction monitoring, Proteomics 2011 Mar;11(6):1135-47.
• 2011
  Court M, Selevsek N, Matondo M, Allory Y, Garin J, Masselon CD, Domon B, Toward a standardized urine proteome analysis methodology, Proteomics 2011 Mar;11(6):1160-71.
• 2009
  Celano L, Gil M, Carballal S, Durán R, Denicola A, Banerjee R, Alvarez B, , Inactivation of cystathionine beta-synthase with peroxynitrite., Arch Biochem Biophys 2009 Nov; 491(1-2): 96-105.
• 2009
  Matondo M, Bousquet-Dubouch MP, Gallay N, Uttenweiler-Joseph S, Recher C, Payrastre B, Manenti S, Monsarrat B, Burlet-Schiltz O, Proteasome inhibitor-induced apoptosis in acute myeloid leukemia: a correlation with the proteasome status, Leuk. Res. 2010 Apr;34(4):498-506.
• 2009
  Bousquet-Dubouch MP, Baudelet E, Guérin F, Matondo M, Uttenweiler-Joseph S, Burlet-Schiltz O, Monsarrat B, Affinity purification strategy to capture human endogenous proteasome complexes diversity and to identify proteasome-interacting proteins, Mol. Cell Proteomics 2009 May;8(5):1150-64.
• 2008
  Bousquet-Dubouch MP, Uttenweiler-Joseph S, Ducoux-Petit M, Matondo M, Monsarrat B, Burlet-Schiltz O, Purification and proteomic analysis of 20S proteasomes from human cells, Methods Mol. Biol. 2008;432:301-20.
• 2007
  Atakan Ablay P, Ozcengiz E, [Rapid purification of Bordetella pertussis fimbria 2, 3 proteins and their immunogenicities]., Mikrobiyol Bul 2007 Jan; 41(1): 11-20.
• 2005
  Godfroid F, Denoël P, Poolman J, Are vaccination programs and isolate polymorphism linked to pertussis re-emergence?, Expert Rev Vaccines 2005 Oct; 4(5): 757-78.
• 2005
  Froment C, Uttenweiler-Joseph S, Bousquet-Dubouch MP, Matondo M, Borges JP, Esmenjaud C, Lacroix C, Monsarrat B, Burlet-Schiltz O, A quantitative proteomic approach using two-dimensional gel electrophoresis and isotope-coded affinity tag labeling for studying human 20S proteasome heterogeneity, Proteomics 2005 Jun;5(9):2351-63.
• 2005
  Moulédous L, Neasta J, Uttenweiler-Joseph S, Stella A, Matondo M, Corbani M, Monsarrat B, Meunier JC, Long-term morphine treatment enhances proteasome-dependent degradation of G beta in human neuroblastoma SH-SY5Y cells: correlation with onset of adenylate cyclase sensitization, Mol. Pharmacol. 2005 Aug;68(2):467-76.
• 1998
  Geuijen CA, Willems RJ, Hoogerhout P, Puijk WC, Meloen RH, Mooi FR, Identification and characterization of heparin binding regions of the Fim2 subunit of Bordetella pertussis., Infect Immun 1998 May; 66(5): 2256-63.
• 1992
  Pearce AM, Irons LI, Robinson A, Seabrook RN, Effects of guanidinium hydrochloride on the structure and immunological properties of Bordetella pertussis fimbriae., Biochem J 1992 May; 283 ( Pt 3)(Pt 3): 823-8.