LabEx IBEID – Integrative Biology of Emerging Infectious Diseases
Presentation The aim of the Integrative Biology of Emerging Infectious Diseases (IBEID) project, coordinated by Professors Philippe Sansonetti and Pascale Cossart, is to develop a structure to anticipate and tackle emerging infectious diseases (EIDs). […]
PTR OmNega: A multi-disciplinary investigation of the Negativicutes: atypical Firmicutes with LPS-outer membranes that inhabit the human gut
The Negativicutes are a poorly studied lineage of bacteria that include common inhabitants of the human oral and gut microbiome such as the anaerobe Veillonella, and which can also develop into opportunistic pathogens. Despite […]
ANR-Arch-Evol: Phylogenomic approaches to investigate the origin and evolution of the Archaea
The Archaea represent an understudied but important fraction of microbial diversity present in a wide variety of environments and ecosystems, including the human body. They have key ecological roles and a unique place in […]
ANR-VIROMET-Uncovering the VIRome of archaeal METhanogens
Methanogenic archaea are phylogenetically diverse, ancient and environmentally widespread. They are common inhabitants of the gastrointestinal tract of humans and other animals, and produce methane, a potent green-house gas, as a metabolic by-product. Despite […]
ANR Fir-OM: Firmicutes with an outer membrane: toward new models to study the diderm/monoderm cell envelope transition
The bacterial envelope is one of the oldest and most essential cellular components, being involved in key housekeeping functions, such as physical integrity, cell division, motility, substrate uptake and secretion, and cell-cell communication. It […]
BMGE: Block Mapping and Gathering with Entropy
The quality of multiple sequence alignments plays an important role in the accuracy of phylogenetic inference. It has been shown that removing ambiguously aligned regions, but also other sources of bias such as highly […]
2020The host-associated archaeome., Nat Rev Microbiol 2020 Nov; 18(11): 622-636.
2020Genome-wide analysis of the Firmicutes illuminates the diderm/monoderm transition., Nat Ecol Evol 2020 Oct 19. Online ahead of print.
2020Autotransporters Drive Biofilm Formation and Autoaggregation in the Diderm Firmicute Veillonella parvula., J Bacteriol 2020 Oct; 202(21): .
2020Autotransporters drive biofilm formation and auto-aggregation in the diderm Firmicute Veillonella parvula, J Bacteriol . 2020 Aug 17;JB.00461-20. doi: 10.1128/JB.00461-20. Online ahead of print. .
2020The rise of diversity in metabolic platforms across the Candidate Phyla Radiation., BMC Biol. 2020 Jun; 18(1): 69.
2020Roadmap for naming uncultivated Archaea and Bacteria., Nat Microbiol 2020 Jun; (): .
2020Resource availability drives bacterial succession during leaf-litter decomposition in a bromeliad ecosystem., FEMS Microbiol Ecol 2020 04; 96(4): .
2020One or two membranes? Diderm Firmicutes challenge the Gram-positive/Gram-negative divide., Mol. Microbiol. 2020 03; 113(3): 659-671.
2020Evolutionary relationships between archaea and eukaryotes, Nat Ecol Evol 2020 Jan;4(1):20-21.
2019An archaeal origin of the Wood-Ljungdahl HMPT branch and the emergence of bacterial methylotrophy, Nat Microbiol 2019 Aug;.
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