Jean-Christophe Olivo-Marin is the Head of the Bioimage Analysis unit and the director of the institut Carnot Pasteur Microbes et Santé. He chaired the Cell Biology and Infection Department (2010-2014) and was CTO and Director of the Center for Innovation and Technological Research (2015-2018). Previous to that, he was at the European Molecular Biology Laboratory, Heidelberg, from 1990 to 1998. He received the PhD and HDR degrees in optics and signal processing from the Institut d’Optique Théorique et Appliquée, University of Paris-Orsay, France. He is a Fellow of IEEE, SPIE, and OPTICA, an IEEE Signal Processing Society Distinguished Lecturer, and was Chair of the IEEE SPS Bio Imaging and Signal Processing Technical Committee (BISP-TC). His research interests are in mathematical and machine learning approaches for biological imaging, in computer vision and motion analysis for cellular dynamics.
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2024Fibronectin induces a transition from amoeboid to a fan morphology and modifies migration in Entamoeba histolytica, PLoS Pathogens.
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2024Deep ContourFlow: Advancing Active Contours with Deep Learning, arXiv:2407.10696.
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2024Fibronectin induces a transition from amoeboid to a fan morphology and modifies migration in Entamoeba histolytica., PLoS Pathog 2024 Jul; 20(7): e1012392.
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2024Sparse Non-Negative Matrix Factorization for Preclinical Bioluminescent Imaging, 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI).
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2024Time-Series Analysis of Cellular Shapes Using Transported Velocity Fields, SSRN.
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2024Scribble-based fast weak-supervision and interactive corrections for segmenting whole slide images, Computer Science.
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2024Bridging the Gap: Integrating Cutting-edge Techniques into Biological Imaging with deepImageJ, bioRxiv, 2024.
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2024JDLL: a library to run deep learning models on Java bioimage informatics platforms., Nat Methods 2024 Jan; 21(1): 7-8.
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2024Three-dimensional cell culture conditions promoted the Mesenchymal-Amoeboid Transition in the Triple-Negative Breast Cancer cell line MDA-MB-231., Front Cell Dev Biol 2024 ; 12(): 1435708.
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2023Encystation and Stress Responses under the Control of Ubiquitin-like Proteins in Pathogenic Amoebae, Microorganisms.
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