• 2024
  Vernel-Pauillac F, Laurent-Winter C, Fiette L, Janbon G, Aimanianda V, Dromer F, Cryptococcus neoformans infections: aspartyl protease potential to improve outcome in susceptible hosts., mBio 2024 Oct; (): e0273324.
• 2024
  Dugied G, Douche T, Dos Santos M, Giai Gianetto Q Q, Cassonnet C, Vuillier F, Cassonnet P, Jacob Y, van der Werf S, Komarova A, Matondo M, Karim M, Demeret C, Profiling Cullin4-E3 ligases interactomes and their rewiring in influenza A virus infection., Mol Cell Proteomics 2024 Oct; (): 100856.
• 2024
  Roberto Notario Manzano, Thibault Chaze, Eric Rubinstein, Esthel Pénard, Mariette Matondo, Chiara Zurzolo, Christel Brou, Proteomic landscape of tunneling nanotubes reveals CD9 and CD81 tetraspanins as key regulators, eLife, 2024, 13, pp.RP99172. ⟨10.7554/eLife.99172⟩.
• 2024
  Dupont M, Krischuns T, Gianetto QG, Paisant S, Bonazza S, Brault JB, Douché T, Arragain B, Florez-Prada A, Perez-Perri JI, Hentze MW, Cusack S, Matondo M, Isel C, Courtney DG, Naffakh N, The RBPome of influenza A virus NP-mRNA reveals a role for TDP-43 in viral replication., Nucleic Acids Res 2024 Apr; (): .
• 2024
  David Fernandez-Martinez, Youxin Kong, Sylvie Goussard, Agustin Zavala, Pauline Gastineau, Martial Jean-Pierre Rey, Gabriel Ayme, Julia Chamot‐rooke, Pierre Lafaye, Matthijn Vos, Ariel Mechaly, Guillaume Duménil, Cryo-EM structures of type IV pili complexed with nanobodies reveal immune escape mechanisms, Nature Communications, 2024, 15 (1), pp.2414. ⟨10.1038/s41467-024-46677-y⟩.
• 2024
  Nouchikian L, Fernandez-Martinez D, Renard PY, Sabot C, Duménil G, Rey M, Chamot-Rooke J, Do Not Waste Time─Ensure Success in Your Cross-Linking Mass Spectrometry Experiments before You Begin., Anal Chem 2024 Feb; 96(6): 2506-2513.
• 2023
  Patitucci C, Hernández-Camacho JD, Vimont E, Yde S, Cokelaer T, Chaze T, Giai Gianetto Q, Matondo M, Gazi A, Nemazanyy I, Stroud DA, Hock DH, Donnarumma E, Wai T, Mtfp1 ablation enhances mitochondrial respiration and protects against hepatic steatosis., Nat Commun 2023 Dec; 14(1): 8474.
• 2023
  Tejada-Arranz A, Lulla A, Bouilloux-Lafont M, Turlin E, Pei XY, Douché T, Matondo M, Williams AH, Raynal B, Luisi BF, De Reuse H, Acetylation regulates the oligomerization state and activity of RNase J, the Helicobacter pylori major ribonuclease., Nat Commun 2023 Dec; 14(1): 8072.
• 2023
  J Michael Henderson, Nina Ljubojevic, Sevan Belian, Thibault Chaze, Daryl Castaneda, Aude Battistella, Quentin Giai Gianetto, Mariette Matondo, Stéphanie Descroix, Patricia Bassereau, Chiara Zurzolo, Tunnelling nanotube formation is driven by Eps8/IRSp53‐dependent linear actin polymerization, EMBO Journal, 2023, pp.e113761. ⟨10.15252/embj.2023113761⟩.
• 2023
  Tabb DL, Jeong K, Druart K, Gant MS, Brown KA, Nicora C, Zhou M, Couvillion S, Nakayasu E, Williams JE, Peterson HK, McGuire MK, McGuire MA, Metz TO, Chamot-Rooke J, Comparing Top-Down Proteoform Identification: Deconvolution, PrSM Overlap, and PTM Detection., J Proteome Res 2023 May; (): .
• 2023
  Soraya Matczak, Valérie Bouchez, Pauline Leroux, Thibaut Douché, Nils Collinet, Annie Landier, Quentin Giai Gianetto, Sophie Guillot, Julia Chamot-Rooke, Milena Hasan, Mariette Matondo, Sylvain Brisse, Julie Toubiana, Biological differences between FIM2 and FIM3 fimbriae of Bordetella pertussis: not just the serotype, Microbes and Infection, 2023, pp.105152. ⟨10.1016/j.micinf.2023.105152⟩.
• 2023
  Lê-Bury P, Druart K, Savin C, Lechat P, Mas Fiol G, Matondo M, Bécavin C, Dussurget O, Pizarro-Cerdá J, Yersiniomics, a Multi-Omics Interactive Database for Yersinia Species., Microbiol Spectr 2023 Feb; 11(2): e0382622.
• 2023
  Nardella F, Dobrescu I, Hassan H, Rodrigues F, Thiberge S, Mancio-Silva L, Tafit A, Jallet C, Cadet-Daniel V, Goussin S, Lorthiois A, Menon Y, Molinier N, Pechalrieu D, Long C, Sautel F, Matondo M, Duchateau M, Médard G, Witkowski B, Scherf A, Halby L, Arimondo PB , Hemisynthetic alkaloids derived from trilobine are antimalarials with sustained activity in multidrug-resistant Plasmodium falciparum., iScience 2023 Feb; 26(2): 105940.
• 2023
  Gedeon A, Karimova G, Ayoub N, Dairou J, Giai Gianetto Q, Vichier-Guerre S, Vidalain PO, Ladant D, Munier-Lehmann H, Interaction network among de novo purine nucleotide biosynthesis enzymes in Escherichia coli., FEBS J 2023 Feb; (): .
• 2023
  Sternke-Hoffmann R, Pauly T, Norrild RK, Hansen J, Tucholski F, Høie MH, Marcatili P, Dupré M, Duchateau M, Rey M, Malosse C, Metzger S, Boquoi A, Platten F, Egelhaaf SU, Chamot-Rooke J, Fenk R, Nagel-Steger L, Haas R, Buell AK, , Widespread amyloidogenicity potential of multiple myeloma patient-derived immunoglobulin light chains., BMC Biol 2023 Feb; 21(1): 21.
• 2022
  Donnarumma E, Kohlhaas M, Vimont E, Kornobis E, Chaze T, Gianetto QG, Matondo M, Moya-Nilges M, Maack C, Wai T, , Mitochondrial Fission Process 1 controls inner membrane integrity and protects against heart failure., Nat Commun 2022 Nov; 13(1): 6634.
• 2022
  Transito Garcia-Garcia* , Thibaut Douché* , Quentin Giai Gianetto , Sandrine Poncet , Nesrine El Omrani , Wiep Klaas Smits, Elodie Cuenot , Mariette Matondo # , Isabelle Martin-Verstraete #, In-depth characterization of the Clostridioides difficile phosphoproteome to identify Ser/Thr kinase substrates, Mol Cell Proteomics .
• 2022
  Garcia-Garcia T, Douché T, Gianetto QG, Poncet S, El Omrani N, Smits WK, Cuenot E, Matondo M, Martin-Verstraete I, , In-depth characterization of the Clostridioides difficile phosphoproteome to identify Ser/Thr kinase substrates., Mol Cell Proteomics 2022 Oct; (): 100428.
• 2022
  Bernard C, Locard-Paulet M, Noël C, Duchateau M, Giai Gianetto Q, Moumen B, Rattei T, Hechard Y, Jensen LJ, Matondo M, Samba-Louaka A, , A time-resolved multi-omics atlas of Acanthamoeba castellanii encystment., Nat Commun 2022 Jul; 13(1): 4104.
• 2022
  Leseigneur C, Boucontet L, Duchateau M, Pizarro-Cerda J, Matondo M, Colucci-Guyon E, Dussurget O, , NAD kinase promotes Staphylococcus aureus pathogenesis by supporting production of virulence factors and protective enzymes., Elife 2022 Jun; 11(): .
• 2022
  Griego A, Douché T, Gianetto QG, Matondo M, Manina G, , RNase E and HupB dynamics foster mycobacterial cell homeostasis and fitness., iScience 2022 May; 25(5): 104233.
• 2022
  Azevedo R, Jacquemin C, Villain N, Fenaille F, Lamari F, Becher F, , Mass Spectrometry for Neurobiomarker Discovery: The Relevance of Post-Translational Modifications., Cells 2022 Apr; 11(8): .
• 2022
  Si Y, Bon C, Barbachowska M, Cadet-Daniel V, Jallet C, Soresinetti L, Boullé M, Duchateau M, Matondo M, Agou F, Halby L, Arimondo PB, , A novel screening strategy to identify histone methyltransferase inhibitors reveals a crosstalk between DOT1L and CARM1., RSC Chem Biol 2022 Apr; 3(4): 456-467.
• 2022
  Piel L, Rajan KS, Bussotti G, Varet H, Legendre R, Proux C, Douché T, Giai-Gianetto Q, Chaze T, Cokelaer T, Vojtkova B, Gordon-Bar N, Doniger T, Cohen-Chalamish S, Rengaraj P, Besse C, Boland A, Sadlova J, Deleuze JF, Matondo M, Unger R, Volf P, Michaeli S, Pescher P, Späth GF, Experimental evolution links post-transcriptional regulation to Leishmania fitness gain., PLoS Pathog 2022 Mar; 18(3): e1010375.
• 2022
  Gaiteiro C, Soares J, Relvas-Santos M, Peixoto A, Ferreira D, Paulo P, Brandão A, Fernandes E, Azevedo R, Palmeira C, Freitas R, Miranda A, Osório H, Prieto J, Lima L, Silva AMN, Santos LL, Ferreira JA, , Glycoproteogenomics characterizes the CD44 splicing code associated with bladder cancer invasion., Theranostics 2022 ; 12(7): 3150-3177.
• 2021
  Dhenin J, Lima DB, Dupré M, Chamot-Rooke J, , TDFragMapper: a visualization tool for evaluating experimental parameters in top-down proteomics., Bioinformatics 2021 Nov; (): .
• 2021
  Canul-Tec JC, Kumar A, Dhenin J, Assal R, Legrand P, Rey M, Chamot-Rooke J, Reyes N, , The ion-coupling mechanism of human excitatory amino acid transporters., EMBO J 2021 Nov; (): e108341.
• 2021
  Virginie Stévenin, Quentin Giai Gianetto, Magalie Duchateau, Mariette I Matondo, Jost Enninga, Yuen-Yan Chang, Purification of infection-associated macropinosomes by magnetic isolation for proteomic characterization, Nature Protocols, 2021, 16 (11), pp.5220-5249. ⟨10.1038/s41596-021-00610-5⟩.
• 2021
  Luke K. McKenzie, Marie Flamme, Patrick S. Felder, Johannes Karges, Frederic Bonhomme, Albert Gandioso, Christian Malosse, Gilles Gasser*, Marcel Hollenstein*, A ruthenium-oligonucleotide bioconjugated photosensitizing aptamer for cancer cell specific photodynamic therapy, ChemRxiv 2021, 10.33774/chemrxiv-2021-5n9xv.
• 2021
  Dupré M, Duchateau M, Sternke-Hoffmann R, Boquoi A, Malosse C, Fenk R, Haas R, Buell AK, Rey M, Chamot-Rooke J, , De Novo Sequencing of Antibody Light Chain Proteoforms from Patients with Multiple Myeloma., Anal Chem 2021 08; 93(30): 10627-10634.
• 2021
  Rizzo J, Wong SSW, Gazi AD, Moyrand F, Chaze T, Commere PH, Novault S, Matondo M, Péhau-Arnaudet G, Reis FCG, Vos M, Alves LR, May RC, Nimrichter L, Rodrigues ML, Aimanianda V, Janbon G, , Cryptococcus extracellular vesicles properties and their use as vaccine platforms., J Extracell Vesicles 2021 08; 10(10): e12129.
• 2021
  Peixoto A, Ferreira D, Azevedo R, Freitas R, Fernandes E, Relvas-Santos M, Gaiteiro C, Soares J, Cotton S, Teixeira B, Paulo P, Lima L, Palmeira C, Martins G, Oliveira MJ, Silva AMN, Santos LL, Ferreira JA, , Glycoproteomics identifies HOMER3 as a potentially targetable biomarker triggered by hypoxia and glucose deprivation in bladder cancer., J Exp Clin Cancer Res 2021 Jun; 40(1): 191.
• 2021
  Chiva C, Mendes Maia T, Panse C, Stejskal K, Douché T, Matondo M, Loew D, Helm D, Rettel M, Mechtler K, Impens F, Nanni P, Shevchenko A, Sabidó E, , Quality standards in proteomics research facilities: Common standards and quality procedures are essential for proteomics facilities and their users., EMBO Rep 2021 May; (): e52626.
• 2021
  Garcia-Garcia T, Poncet S, Cuenot E, Douché T, Giai Gianetto Q, Peltier J, Courtin P, Chapot-Chartier MP, Matondo M, Dupuy B, Candela T, Martin-Verstraete I, , Ser/Thr Kinase-Dependent Phosphorylation of the Peptidoglycan Hydrolase CwlA Controls Its Export and Modulates Cell Division in Clostridioides difficile., mBio 2021 May; 12(3): .
• 2021
  Tejada-Arranz A, Matos RG, Quentin Y, Bouilloux-Lafont M, Galtier E, Briolat V, Kornobis E, Douché T, Matondo M, Arraiano CM, Raynal B, De Reuse H, , RNase R is associated in a functional complex with the RhpA DEAD-box RNA helicase in Helicobacter pylori., Nucleic Acids Res 2021 49:5249-5264.
• 2021
  Rey M, Dhenin J, Kong Y, Nouchikian L, Filella I, Duchateau M, Dupré M, Pellarin R, Duménil G, Chamot-Rooke J, , Advanced In Vivo Cross-Linking Mass Spectrometry Platform to Characterize Proteome-Wide Protein Interactions., Anal Chem 2021 Feb; (): .
• 2021
  Cotton S, Ferreira D, Soares J, Peixoto A, Relvas-Santos M, Azevedo R, Piairo P, Diéguez L, Palmeira C, Lima L, Silva AMN, Lara Santos L, Ferreira JA, , Target Score-A Proteomics Data Selection Tool Applied to Esophageal Cancer Identifies GLUT1-Sialyl Tn Glycoforms as Biomarkers of Cancer Aggressiveness., Int J Mol Sci 2021 Feb; 22(4): .
• 2021
  Meignié A, Combredet C, Santolini M, Kovács IA, Douché T, Gianetto QG, Eun H, Matondo M, Jacob Y, Grailhe R, Tangy F, Komarova AV, Proteomic Analysis Uncovers Measles Virus Protein C Interaction With p65-iASPP Protein Complex., Mol Cell Proteomics 2021 ; 20(): 100049.
• 2021
  Genera M, Quioc-Salomon B, Nourisson A, Colcombet-Cazenave B, Haouz A, Mechaly A, Matondo M, Duchateau M, König A, Windisch MP, Neuveut C, Wolff N, Caillet-Saguy C, , Molecular basis of the interaction of the human tyrosine phosphatase PTPN3 with the hepatitis B virus core protein., Sci Rep 2021 Jan; 11(1): 944.
• 2021
  Epelboin Y, Wang L, Giai Gianetto Q, Choumet V, Gaborit P, Issaly J, Guidez A, Douché T, Chaze T, Matondo M, Dusfour I, , CYP450 core involvement in multiple resistance strains of Aedes aegypti from French Guiana highlighted by proteomics, molecular and biochemical studies., PLoS One 2021 ; 16(1): e0243992.
• 2021
  Dellière S, Duchateau M, Wong SSW, Giai Gianetto Q, Guegan H, Matondo M, Gangneux JP, Aimanianda V, , Proteomic Analysis of Humoral Immune Components in Bronchoalveolar Lavage of Patients Infected or Colonized by Aspergillus fumigatus., Front Immunol 2021 ; 12(): 677798.
• 2020
  Dumas G, Goubran-Botros H, Matondo M, Pagan C, Boulègue C, Chaze T, Chamot-Rooke J, Maronde E, Bourgeron T, , Mass-spectrometry analysis of the human pineal proteome during night and day and in autism., J Pineal Res 2020 Dec; (): e12713.
• 2020
  Addi C, Presle A, Frémont S, Cuvelier F, Rocancourt M, Milin F, Schmutz S, Chamot-Rooke J, Douché T, Duchateau M, Giai Gianetto Q, Salles A, Ménager H, Matondo M, Zimmermann P, Gupta-Rossi N, Echard A, The Flemmingsome reveals an ESCRT-to-membrane coupling via ALIX/syntenin/syndecan-4 required for completion of cytokinesis., Nat Commun 2020 Apr; 11(1): 1941.
• 2020
  Lima DB, Dupré M, Duchateau M, Gianetto QG, Rey M, Matondo M, Chamot-Rooke J, , ProteoCombiner: integrating bottom-up with top-down proteomics data for improved proteoform assessment., Bioinformatics 2020 Nov; (): .
• 2020
  Leitner A, Bonvin AMJJ, Borchers CH, Chalkley RJ, Chamot-Rooke J, Combe CW, Cox J, Dong MQ, Fischer L, Götze M, Gozzo FC, Heck AJR, Hoopmann MR, Huang L, Ishihama Y, Jones AR, Kalisman N, Kohlbacher O, Mechtler K, Moritz RL, Netz E, Novak P, Petrotchenko E, Sali A, Scheltema RA, Schmidt C, Schriemer D, Sinz A, Sobott F, Stengel F, Thalassinos K, Urlaub H, Viner R, Vizcaíno JA, Wilkins MR, Rappsilber J, , Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry., Structure 2020 Nov; 28(11): 1259-1268.
• 2020
  Dupré M, Duchateau M, Malosse C, Borges-Lima D, Calvaresi V, Podglajen I, Clermont D, Rey M, Chamot-Rooke J, , Optimization of a Top-Down Proteomics Platform for Closely Related Pathogenic Bacterial Discrimination., J Proteome Res 2020 Oct; (): .
• 2020
  Srzentić K, Fornelli L, Tsybin YO, Loo JA, Seckler H, Agar JN, Anderson LC, Bai DL, Beck A, Brodbelt JS, van der Burgt YEM, Chamot-Rooke J, Chatterjee S, Chen Y, Clarke DJ, Danis PO, Diedrich JK, D'Ippolito RA, Dupré M, Gasilova N, Ge Y, Goo YA, Goodlett DR, Greer S, Haselmann KF, He L, Hendrickson CL, Hinkle JD, Holt MV, Hughes S, Hunt DF, Kelleher NL, Kozhinov AN, Lin Z, Malosse C, Marshall AG, Menin L, Millikin RJ, Nagornov KO, Nicolardi S, Paša-Tolić L, Pengelley S, Quebbemann NR, Resemann A, Sandoval W, Sarin R, Schmitt ND, Shabanowitz J, Shaw JB, Shortreed MR, Smith LM, Sobott F, Suckau D, Toby T, Weisbrod CR, Wildburger NC, Yates JR, Yoon SH, Young NL, Zhou M, , Interlaboratory Study for Characterizing Monoclonal Antibodies by Top-Down and Middle-Down Mass Spectrometry., J Am Soc Mass Spectrom 2020 Sep; 31(9): 1783-1802.
• 2020
  More KR, Kaur I, Giai Gianetto Q, Invergo BM, Chaze T, Jain R, Huon C, Gutenbrunner P, Weisser H, Matondo M, Choudhary JS, Langsley G, Singh S, Chitnis CE, , Phosphorylation-Dependent Assembly of a 14-3-3 Mediated Signaling Complex during Red Blood Cell Invasion by Plasmodium falciparum Merozoites., mBio 2020 08; 11(4): .
• 2020
  Rizzo J, Chaze T, Miranda K, Roberson RW, Gorgette O, Nimrichter L, Matondo M, Latgé JP, Beauvais A, Rodrigues ML, , Characterization of Extracellular Vesicles Produced by Aspergillus fumigatus Protoplasts., mSphere 2020 08; 5(4): .
• 2020
  Aguilar-Rojas A, Castellanos-Castro S, Matondo M, Gianetto QG, Varet H, Sismeiro O, Legendre R, Fernandes J, Hardy D, Coppée JY, Olivo-Marin JC, Guillen N, , Insights into amebiasis using a human 3D-intestinal model., Cell Microbiol 2020 Aug; 22(8): e13203.
• 2020
  Chang YY, Stévenin V, Duchateau M, Giai Gianetto Q, Hourdel V, Rodrigues CD, Matondo M, Reiling N, Enninga J, Shigella hijacks the exocyst to cluster macropinosomes for efficient vacuolar escape., PLoS Pathog 2020 Aug; 16(8): e1008822.
• 2020
  Legros V, Jeannin P, Burlaud-Gaillard J, Chaze T, Gianetto QG, Butler-Browne G, Mouly V, Zoladek J, Afonso PV, Gonzàlez MN, Matondo M, Riederer I, Roingeard P, Gessain A, Choumet V, Ceccaldi PE, , Differentiation-dependent susceptibility of human muscle cells to Zika virus infection., PLoS Negl Trop Dis 2020 08; 14(8): e0008282.
• 2020
  Medits I, Vaney MC, Rouvinski A, Rey M, Chamot-Rooke J, Rey FA, Heinz FX, Stiasny K, , Extensive flavivirus E trimer breathing accompanies stem zippering of the post-fusion hairpin., EMBO Rep. 2020 Jun; (): e50069.
• 2020
  Flaugnatti N, Rapisarda C, Rey M, Beauvois SG, Nguyen VA, Canaan S, Durand E, Chamot-Rooke J, Cascales E, Fronzes R, Journet L, , Structural basis for loading and inhibition of a bacterial T6SS phospholipase effector by the VgrG spike., EMBO J. 2020 Jun; 39(11): e104129.
• 2020
  Maffei B, Laverrière M, Wu Y, Triboulet S, Perrinet S, Duchateau M, Matondo M, Hollis RL, Gourley C, Rupp J, Keillor JW, Subtil A, , Infection-driven activation of transglutaminase 2 boosts glucose uptake and hexosamine biosynthesis in epithelial cells., EMBO J 2020 04; 39(8): e102166.
• 2020
  Fernandes E, Freitas R, Ferreira D, Soares J, Azevedo R, Gaiteiro C, Peixoto A, Oliveira S, Cotton S, Relvas-Santos M, Afonso LP, Palmeira C, Oliveira MJ, Ferreira R, Silva AMN, Lara Santos L, Ferreira JA, , Nucleolin-Sle A Glycoforms as E-Selectin Ligands and Potentially Targetable Biomarkers at the Cell Surface of Gastric Cancer Cells., Cancers (Basel) 2020 Apr; 12(4): .
• 2020
  Jabs S, Biton A, Bécavin C, Nahori MA, Ghozlane A, Pagliuso A, Spanò G, Guérineau V, Touboul D, Giai Gianetto Q, Chaze T, Matondo M, Dillies MA, Cossart P, , Impact of the gut microbiota on the m6A epitranscriptome of mouse cecum and liver., Nat Commun 2020 03; 11(1): 1344.
• 2020
  Özbaykal G, Wollrab E, Simon F, Vigouroux A, Cordier B, Aristov A, Chaze T, Matondo M, van Teeffelen S, , The transpeptidase PBP2 governs initial localization and activity of the major cell-wall synthesis machinery in E. coli., Elife 2020 Feb; 9(): .
• 2020
  Carvalho F, Spier A, Chaze T, Matondo M, Cossart P, Stavru F, , Listeria monocytogenes Exploits Mitochondrial Contact Site and Cristae Organizing System Complex Subunit Mic10 To Promote Mitochondrial Fragmentation and Cellular Infection., mBio 2020 02; 11(1): .
• 2020
  Vigouroux A, Cordier B, Aristov A, Alvarez L, Özbaykal G, Chaze T, Oldewurtel ER, Matondo M, Cava F, Bikard D, van Teeffelen S, , Class-A penicillin binding proteins do not contribute to cell shape but repair cell-wall defects., Elife 2020 Jan; 9(): .
• 2020
  Besson B, Basset J, Gatellier S, Chabrolles H, Chaze T, Hourdel V, Matondo M, Pardigon N, Choumet V, Comparison of a human neuronal model proteome upon Japanese encephalitis or West Nile Virus infection and potential role of mosquito saliva in neuropathogenesis., PLoS One 2020 ; 15(5): e0232585.
• 2019
  Virginie Stévenin, Yuen-Yan Chang, Yoann Le Toquin, Magalie Duchateau, Quentin Giai Gianetto, Chak Hon Luk, Audrey Salles, Victoria Sohst, Mariette Matondo, Norbert Reiling, Jost Enninga, Dynamic Growth and Shrinkage of the Salmonella-Containing Vacuole Determines the Intracellular Pathogen Niche, Cell Reports, 2019, 29 (12), pp.3958-3973.e7. ⟨10.1016/j.celrep.2019.11.049⟩.
• 2019
  Valsecchi I, Lai JI, Stephen-Victor E, Pillé A, Beaussart A, Lo V, Pham CLL, Aimanianda V, Kwan AH, Duchateau M, Gianetto QG, Matondo M, Lehoux M, Sheppard DC, Dufrene YF, Bayry J, Guijarro JI, Sunde M, Latgé JP, , Assembly and disassembly of Aspergillus fumigatus conidial rodlets., Cell Surf 2019 Dec; 5(): 100023.
• 2019
  Kennouche P, Charles-Orszag A, Nishiguchi D, Goussard S, Imhaus AF, Dupré M, Chamot-Rooke J, Duménil G, , Deep mutational scanning of the Neisseria meningitidis major pilin reveals the importance of pilus tip-mediated adhesion., EMBO J 2019 11; 38(22): e102145.
• 2019
  Smith LM, Thomas PM, Shortreed MR, Schaffer LV, Fellers RT, LeDuc RD, Tucholski T, Ge Y, Agar JN, Anderson LC, Chamot-Rooke J, Gault J, Loo JA, Paša-Tolić L, Robinson CV, Schlüter H, Tsybin YO, Vilaseca M, Vizcaíno JA, Danis PO, Kelleher NL, A five-level classification system for proteoform identifications, Nat. Methods 2019 Oct;16(10):939-940.
• 2019
  Cuenot E, Garcia-Garcia T, Douche T, Gorgette O, Courtin P, Denis-Quanquin S, Hoys S, Tremblay YDN, Matondo M, Chapot-Chartier MP, Janoir C, Dupuy B, Candela T, Martin-Verstraete I, , The Ser/Thr Kinase PrkC Participates in Cell Wall Homeostasis and Antimicrobial Resistance in Clostridium difficile., Infect Immun 2019 08; 87(8): .
• 2019
  Wieczorek S, Giai Gianetto Q, Burger T, Five simple yet essential steps to correctly estimate the rate of false differentially abundant proteins in mass spectrometry analyses, Journal of Proteomics, 2019, 103441, ISSN 1874-3919..
• 2019
  Negro V, Krin E, Aguilar Pierlé S, Chaze T, Giai Gianetto Q, Kennedy SP, Matondo M, Mazel D, Baharoglu Z, , RadD Contributes to R-Loop Avoidance in Sub-MIC Tobramycin., mBio 2019 07; 10(4): .
• 2019
  Hommel B, Sturny-Leclère A, Volant S, Veluppillai N, Duchateau M, Yu CH, Hourdel V, Varet H, Matondo M, Perfect JR, Casadevall A, Dromer F, Alanio A, Cryptococcus neoformans resists to drastic conditions by switching to viable but non-culturable cell phenotype., PLoS Pathog 2019 Jul; 15(7): e1007945.
• 2019
  Donnelly DP, Rawlins CM, DeHart CJ, Fornelli L, Schachner LF, Lin Z, Lippens JL, Aluri KC, Sarin R, Chen B, Lantz C, Jung W, Johnson KR, Koller A, Wolff JJ, Campuzano IDG, Auclair JR, Ivanov AR, Whitelegge JP, Paša-Tolić L, Chamot-Rooke J, Danis PO, Smith LM, Tsybin YO, Loo JA, Ge Y, Kelleher NL, Agar JN, Best practices and benchmarks for intact protein analysis for top-down mass spectrometry, Nat. Methods 2019 07;16(7):587-594.
• 2019
  O'Brien DP, Cannella SE, Voegele A, Raoux-Barbot D, Davi M, Douché T, Matondo M, Brier S, Ladant D, Chenal A, , Post-translational acylation controls the folding and functions of the CyaA RTX toxin., FASEB J 2019 09; 33(9): 10065-10076.
• 2019
  Valsecchi I, Dupres V, Michel JP, Duchateau M, Matondo M, Chamilos G, Saveanu C, Guijarro JI, Aimanianda V, Lafont F, Latgé JP, Beauvais A, , The puzzling construction of the conidial outer layer of Aspergillus fumigatus., Cell Microbiol 2019 05; 21(5): e12994.
• 2019
  Neves M, Azevedo R, Lima L, Oliveira MI, Peixoto A, Ferreira D, Soares J, Fernandes E, Gaiteiro C, Palmeira C, Cotton S, Mereiter S, Campos D, Afonso LP, Ribeiro R, Fraga A, Tavares A, Mansinho H, Monteiro E, Videira PA, Freitas PP, Reis CA, Santos LL, Dieguez L, Ferreira JA, , Exploring sialyl-Tn expression in microfluidic-isolated circulating tumour cells: A novel biomarker and an analytical tool for precision oncology applications., N Biotechnol 2019 Mar; 49(): 77-87.
• 2019
  Alves Feliciano C, Douché T, Giai Gianetto Q, Matondo M, Martin-Verstraete I, Dupuy B, , CotL, a new morphogenetic spore coat protein of Clostridium difficile., Environ Microbiol 2019 03; 21(3): 984-1003.
• 2019
  Voegele A, Sadi M, Raoux-Barbot D, Douché T, Matondo M, Ladant D, Chenal A, , The Adenylate Cyclase (CyaA) Toxin from Bordetella pertussis Has No Detectable Phospholipase A (PLA) Activity In Vitro., Toxins (Basel) 2019 02; 11(2): .
• 2019
  Lima DB, Silva ARF, Dupré M, Santos MDM, Clasen MA, Kurt LU, Aquino PF, Barbosa VC, Carvalho PC, Chamot-Rooke J, , Top-Down Garbage Collector: a tool for selecting high-quality top-down proteomics mass spectra., Bioinformatics 2019 09; 35(18): 3489-3490.
• 2019
  Barkoff AM, Mertsola J, Pierard D, Dalby T, Hoegh SV, Guillot S, Stefanelli P, van Gent M, Berbers G, Vestrheim D, Greve-Isdahl M, Wehlin L, Ljungman M, Fry NK, Markey K, He Q, Pertactin-deficient Bordetella pertussis isolates: evidence of increased circulation in Europe, 1998 to 2015., Euro Surveill 2019 Feb; 24(7): .
• 2019
  Peixoto A, Relvas-Santos M, Azevedo R, Santos LL, Ferreira JA, , Protein Glycosylation and Tumor Microenvironment Alterations Driving Cancer Hallmarks., Front Oncol 2019 ; 9(): 380.
• 2018
  Caminha MA, de Lorena VMB, de Oliveira Júnior W, Perales J, Carvalho PC, Lima DB, Cavalcanti MDGAM, Martins SM, Valente RH, Menna-Barreto RFS, Data on antigen recognition hindrance by antibodies covalently immobilized to Protein G magnetic beads by dimethyl pimelimidate (DMP) cross-linking, Data Brief 2019 Feb;22:516-521.
• 2018
  Cirri E, Brier S, Assal R, Canul-Tec JC, Chamot-Rooke J, Reyes N, Consensus designs and thermal stability determinants of a human glutamate transporter, Elife 2018 10;7.
• 2018
  Cherrak Y, Rapisarda C, Pellarin R, Bouvier G, Bardiaux B, Allain F, Malosse C, Rey M, Chamot-Rooke J, Cascales E, Fronzes R, Durand E, Biogenesis and structure of a type VI secretion baseplate, Nat Microbiol 2018 Oct;.
• 2018
  Rey M, Dupré M, Lopez-Neira I, Duchateau M, Chamot-Rooke J, , eXL-MS: An Enhanced Cross-Linking Mass Spectrometry Workflow To Study Protein Complexes., Anal Chem 2018 09; 90(18): 10707-10714.
• 2018
  Schiettekatte O, Vincent AT, Malosse C, Lechat P, Chamot-Rooke J, Veyrier FJ, Picardeau M, Bourhy P, , Characterization of LE3 and LE4, the only lytic phages known to infect the spirochete Leptospira., Sci Rep 2018 08; 8(1): 11781.
• 2018
  Azevedo R, Soares J, Gaiteiro C, Peixoto A, Lima L, Ferreira D, Relvas-Santos M, Fernandes E, Tavares A, Cotton S, Daniel-da-Silva AL, Santos LL, Vitorino R, Amado F, Ferreira JA, , Glycan affinity magnetic nanoplatforms for urinary glycobiomarkers discovery in bladder cancer., Talanta 2018 Jul; 184(): 347-355.
• 2018
  Fioramonte M, de Jesus HCR, Ferrari AJR, Lima DB, Drekener RL, Correia CRD, Oliveira LG, Neves-Ferreira AGDC, Carvalho PC, Gozzo FC, XPlex: An Effective, Multiplex Cross-Linking Chemistry for Acidic Residues, Anal. Chem. 2018 05;90(10):6043-6050.
• 2018
  Azevedo R, Soares J, Peixoto A, Cotton S, Lima L, Santos LL, Ferreira JA, , Circulating tumor cells in bladder cancer: Emerging technologies and clinical implications foreseeing precision oncology., Urol Oncol 2018 May; 36(5): 221-236.
• 2018
  Pereira JM, Chevalier C, Chaze T, Gianetto Q, Impens F, Matondo M, Cossart P, Hamon MA, , Infection Reveals a Modification of SIRT2 Critical for Chromatin Association., Cell Rep 2018 04; 23(4): 1124-1137.
• 2018
  Anderson MC, Chaze T, Coïc YM, Injarabian L, Jonsson F, Lombion N, Selimoglu-Buet D, Souphron J, Ridley C, Vonaesch P, Baron B, Arena ET, Tinevez JY, Nigro G, Nothelfer K, Solary E, Lapierre V, Lazure T, Matondo M, Thornton D, Sansonetti PJ, Baleux F, Marteyn BS, , MUB40 Binds to Lactoferrin and Stands as a Specific Neutrophil Marker., Cell Chem Biol 2018 04; 25(4): 483-493.e9.
• 2018
  Jeannin P, Chaze T, Giai Gianetto Q, Matondo M, Gout O, Gessain A, Afonso PV, , Proteomic analysis of plasma extracellular vesicles reveals mitochondrial stress upon HTLV-1 infection., Sci Rep 2018 03; 8(1): 5170.
• 2018
  Williams AH, Wheeler R, Rateau L, Malosse C, Chamot-Rooke J, Haouz A, Taha MK, Boneca IG, , A step-by-step in crystallo guide to bond cleavage and 1,6-anhydro-sugar product synthesis by a peptidoglycan-degrading lytic transglycosylase., J Biol Chem 2018 04; 293(16): 6000-6010.
• 2018
  LeDuc RD, Schwämmle V, Shortreed MR, Cesnik AJ, Solntsev SK, Shaw JB, Martin MJ, Vizcaino JA, Alpi E, Danis P, Kelleher NL, Smith LM, Ge Y, Agar JN, Chamot-Rooke J, Loo JA, Pasa-Tolic L, Tsybin YO, ProForma: A Standard Proteoform Notation, J. Proteome Res. 2018 03;17(3):1321-1325.
• 2018
  Li J, Mouyna I, Henry C, Moyrand F, Malosse C, Chamot-Rooke J, Janbon G, Latgé JP, Fontaine T, Glycosylphosphatidylinositol Anchors from Galactomannan and GPI-Anchored Protein Are Synthesized by Distinct Pathways in Aspergillus fumigatus, J Fungi (Basel) 2018 Feb;4(1).
• 2018
  Lima DB, Melchior JT, Morris J, Barbosa VC, Chamot-Rooke J, Fioramonte M, Souza TACB, Fischer JSG, Gozzo FC, Carvalho PC, Davidson WS, Characterization of homodimer interfaces with cross-linking mass spectrometry and isotopically labeled proteins, Nat Protoc 2018 Mar;13(3):431-458.
• 2018
  Azevedo R, Silva AMN, Reis CA, Santos LL, Ferreira JA, , In silico approaches for unveiling novel glycobiomarkers in cancer., J Proteomics 2018 Jan; 171(): 95-106.
• 2018
  O'Brien DP, Perez ACS, Karst J, Cannella SE, Enguéné VYN, Hessel A, Raoux-Barbot D, Voegele A, Subrini O, Davi M, Guijarro JI, Raynal B, Baron B, England P, Hernandez B, Ghomi M, Hourdel V, Malosse C, Chamot-Rooke J, Vachette P, Durand D, Brier S, Ladant D, Chenal A, Calcium-dependent disorder-to-order transitions are central to the secretion and folding of the CyaA toxin of Bordetella pertussis, the causative agent of whooping cough., Toxicon 2018 Jul; 149(): 37-44.
• 2018
  Azevedo R, Gaiteiro C, Peixoto A, Relvas-Santos M, Lima L, Santos LL, Ferreira JA, , CD44 glycoprotein in cancer: a molecular conundrum hampering clinical applications., Clin Proteomics 2018 ; 15(): 22.
• 2017
  Lima L, Neves M, Oliveira MI, Dieguez L, Freitas R, Azevedo R, Gaiteiro C, Soares J, Ferreira D, Peixoto A, Fernandes E, Montezuma D, Tavares A, Ribeiro R, Castro A, Oliveira M, Fraga A, Reis CA, Santos LL, Ferreira JA, , Sialyl-Tn identifies muscle-invasive bladder cancer basal and luminal subtypes facing decreased survival, being expressed by circulating tumor cells and metastases., Urol Oncol 2017 Dec; 35(12): 675.e1-675.e8.
• 2017
  Hamdi K, Salladini E, O'Brien DP, Brier S, Chenal A, Yacoubi I, Longhi S, Structural disorder and induced folding within two cereal, ABA stress and ripening (ASR) proteins, Sci Rep 2017 Nov;7(1):15544.
• 2017
  Azevedo R, Peixoto A, Gaiteiro C, Fernandes E, Neves M, Lima L, Santos LL, Ferreira JA, , Over forty years of bladder cancer glycobiology: Where do glycans stand facing precision oncology?, Oncotarget 2017 Oct; 8(53): 91734-91764.
• 2017
  O'Brien DP, Brier S, Ladant D, Durand D, Chenal A, Vachette P, SEC-SAXS and HDX-MS: A powerful combination. The case of the calcium-binding domain of a bacterial toxin, Biotechnol. Appl. Biochem. 2018 Jan;65(1):62-68.
• 2017
  Besson B, Sonthonnax F, Duchateau M, Ben Khalifa Y, Larrous F, Eun H, Hourdel V, Matondo M, Chamot-Rooke J, Grailhe R, Bourhy H, Regulation of NF-κB by the p105-ABIN2-TPL2 complex and RelAp43 during rabies virus infection., PLoS Pathog 2017 Oct; 13(10): e1006697.
• 2017
  Delhommel F, Cordier F, Bardiaux B, Bouvier G, Colcombet-Cazenave B, Brier S, Raynal B, Nouaille S, Bahloul A, Chamot-Rooke J, Nilges M, Petit C, Wolff N, Structural Characterization of Whirlin Reveals an Unexpected and Dynamic Supramodule Conformation of Its PDZ Tandem, Structure 2017 11;25(11):1645-1656.e5.
• 2017
  Bouchez V, Douché T, Dazas M, Delaplane S, Matondo M, Chamot-Rooke J, Guiso N, , Characterization of Post-Translational Modifications and Cytotoxic Properties of the Adenylate-Cyclase Hemolysin Produced by Various Bordetella pertussis and Bordetella parapertussis Isolates., Toxins (Basel) 2017 09; 9(10): .
• 2017
  Cotton S, Azevedo R, Gaiteiro C, Ferreira D, Lima L, Peixoto A, Fernandes E, Neves M, Neves D, Amaro T, Cruz R, Tavares A, Rangel M, Silva AMN, Santos LL, Ferreira JA, , Targeted O-glycoproteomics explored increased sialylation and identified MUC16 as a poor prognosis biomarker in advanced-stage bladder tumours., Mol Oncol 2017 Aug; 11(8): 895-912.
• 2017
  Poppleton DI, Duchateau M, Hourdel V, Matondo M, Flechsler J, Klingl A, Beloin C, Gribaldo S, Outer Membrane Proteome of Veillonella parvula: A Diderm Firmicute of the Human Microbiome., Front Microbiol 2017 ; 8(): 1215.
• 2017
  Guilvout I, Brier S, Chami M, Hourdel V, Francetic O, Pugsley AP, Chamot-Rooke J, Huysmans GH., Prepore Stability Controls Productive Folding of the BAM-independent Multimeric Outer Membrane Secretin PulD., J Biol Chem. 2017 Jan 6;292(1):328-338..
• 2017
  Lago M, Monteil V, Douche T, Guglielmini J, Criscuolo A, Maufrais C, Matondo M, Norel F, , Proteome remodelling by the stress sigma factor RpoS/σS in Salmonella: identification of small proteins and evidence for post-transcriptional regulation., Sci Rep 2017 05; 7(1): 2127.
• 2017
  Canul-Tec JC, Assal R, Cirri E, Legrand P, Brier S, Chamot-Rooke J, Reyes N, Structure and allosteric inhibition of excitatory amino acid transporter 1, Nature 2017 04;544(7651):446-451.
• 2017
  Duriez E, Masselon CD, Mesmin C, Court M, Demeure K, Allory Y, Malats N, Matondo M, Radvanyi F, Garin J, Domon B, Large-Scale SRM Screen of Urothelial Bladder Cancer Candidate Biomarkers in Urine, J. Proteome Res. 2017 04;16(4):1617-1631.
• 2017
  Kurylo I, Dupré M, Cantel S, Enjalbal C, Drobecq H, Szunerits S, Melnyk O, Boukherroub R, Coffinier Y, , Characterization of peptide attachment on silicon nanowires by X-ray photoelectron spectroscopy and mass spectrometry., Analyst 2017 Mar; 142(6): 969-978.
• 2017
  Silva AR, Lima DB, Peña A, Duran R, Batthyany C, Aquino PF, Leal JC, Rodriguez JE, Domont GB, Santos MD, Chamot-Rooke J, Barbosa VC, Carvalho PC, DiagnoProt: a tool for discovery of new molecules by mass spectrometry, Bioinformatics 2017 Feb;.
• 2017
  Cannella SE, Ntsogo Enguéné VY, Davi M, Malosse C, Sotomayor Pérez AC, Chamot-Rooke J, Vachette P, Durand D, Ladant D, Chenal A, Stability, structural and functional properties of a monomeric, calcium-loaded adenylate cyclase toxin, CyaA, from Bordetella pertussis, Sci Rep 2017 Feb;7:42065.
• 2017
  Guilvout I, Brier S, Chami M, Hourdel V, Francetic O, Pugsley AP, Chamot-Rooke J, Huysmans GH, Prepore Stability Controls Productive Folding of the BAM-independent Multimeric Outer Membrane Secretin PulD., J Biol Chem 2017 Jan; 292(1): 328-338.
• 2017
  O'Brien DP, Durand D, Voegele A, Hourdel V, Davi M, Chamot-Rooke J, Vachette P, Brier S, Ladant D, Chenal A, Calmodulin fishing with a structurally disordered bait triggers CyaA catalysis., PLoS Biol 2017 Dec; 15(12): e2004486.
• 2016
  Matondo M, Marcellin M, Chaoui K, Bousquet-Dubouch MP, Gonzalez-de-Peredo A, Monsarrat B, Burlet-Schiltz O, Determination of differentially regulated proteins upon proteasome inhibition in AML cell lines by the combination of large-scale and targeted quantitative proteomics, Proteomics 2017 04;17(7).
• 2016
  Magliarelli HF, Matondo M, Mészáros G, Goginashvili A, Erbs E, Zhang Z, Mihlan M, Wolfrum C, Aebersold R, Sumara I, Ricci R, Liver ubiquitome uncovers nutrient-stress-mediated trafficking and secretion of complement C3, Cell Death Dis 2016 Oct;7(10):e2411.
• 2016
  Lima A, Bernardes M, Azevedo R, Seabra V, Medeiros R, , Moving toward personalized medicine in rheumatoid arthritis: SNPs in methotrexate intracellular pathways are associated with methotrexate therapeutic outcome., Pharmacogenomics 2016 Oct; 17(15): 1649-1674.
• 2016
  Peixoto A, Fernandes E, Gaiteiro C, Lima L, Azevedo R, Soares J, Cotton S, Parreira B, Neves M, Amaro T, Tavares A, Teixeira F, Palmeira C, Rangel M, Silva AM, Reis CA, Santos LL, Oliveira MJ, Ferreira JA, , Hypoxia enhances the malignant nature of bladder cancer cells and concomitantly antagonizes protein O-glycosylation extension., Oncotarget 2016 Sep; 7(39): 63138-63157.
• 2016
  Vorontsov EA, Rensen E, Prangishvili D, Krupovic M*, Chamot-Rooke J*, Abundant Lysine Methylation and N-Terminal Acetylation in Sulfolobus islandicus Revealed by Bottom-Up and Top-Down Proteomics, Mol. Cell Proteomics 2016 Nov;15(11):3388-3404.
• 2016
  Bailon H, León-Janampa N, Padilla C, Hozbor D, Increase in pertussis cases along with high prevalence of two emerging genotypes of Bordetella pertussis in Perú, 2012., BMC Infect Dis 2016 Aug; 16(): 422.
• 2016
  Demarta-Gatsi C, Smith L, Thiberge S, Peronet R, Commere PH, Matondo M, Apetoh L, Bruhns P, Ménard R, Mécheri S, , Protection against malaria in mice is induced by blood stage-arresting histamine-releasing factor (HRF)-deficient parasites., J Exp Med 2016 07; 213(8): 1419-28.
• 2016
  Hourdel V, Volant S, O'Brien DP, Chenal A, Chamot-Rooke J, Dillies MA, Brier S, MEMHDX: an interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets., Bioinformatics 2016 Nov; 32(22): 3413-3419.
• 2016
  Nivaskumar M, Santos-Moreno J, Malosse C, Nadeau N, Chamot-Rooke J, Tran Van Nhieu G, Francetic O, Pseudopilin residue E5 is essential for recruitment by the type 2 secretion system assembly platform., Mol Microbiol 2016 Sep; 101(6): 924-41.
• 2016
  Segura I, Lange C, Knevels E, Moskalyuk A, Pulizzi R, Eelen G, Chaze T, Tudor C, Boulegue C, Holt M, Daelemans D, Matondo M, Ghesquière B, Giugliano M, Ruiz de Almodovar C, Dewerchin M, Carmeliet P, The Oxygen Sensor PHD2 Controls Dendritic Spines and Synapses via Modification of Filamin A, Cell Rep 2016 Mar;14(11):2653-67.
• 2016
  Nativel P, Rahantamalala A, Ramiandrisoa S, Rasoamampianinaa V, Duchateau M, Chamot-Rooke J, Guebey R, Rasamoelina-Andriamanivo H, Jambou R, Bio-guided identification of proteins for the diagnosis of cysticercosis in swine, Vet. Parasitol. 2016 Apr;220:23-7.
• 2015
  Bernier MC, Chamot-Rooke J, Wysocki VH, R vs. S fluoroproline ring substitution: trans/cis effects on the formation of b2 ions in gas-phase peptide fragmentation, Phys Chem Chem Phys 2016 Jan;18(3):2202-9.
• 2015
  D. Vinella, F. Fischer, E. Vorontsov, J. Gallaud, C. Malosse, V. Michel, C. Cavazza, M. Robbe-saule, P. Richaud, J. Chamot-rooke, C. Brochier-armanet, H. De Reuse, Evolution of Helicobacter: Acquisition by Gastric Species of Two Histidine-Rich Proteins Essential for Colonization, PLoS Pathog 11(12): e1005312. doi:10.1371/journal. ppat.1005312.
• 2015
  Santos JC, Duchateau M, Fredlund J, Weiner A, Mallet A, Schmitt C, Matondo M, Hourdel V, Chamot-Rooke J, Enninga J, The COPII complex and lysosomal VAMP7 determine intracellular Salmonella localization and growth., Cell Microbiol 2015 Dec; 17(12): 1699-720.
• 2015
  Dominique Clermont, Maite Gomard, Sylviane Hamon, Isabelle Bonne, José-Carlos Fernandez, Richard Wheeler, Christian Malosse, Julia Chamot-Rooke, Simonetta Gribaldo, Ivo Gomperts Boneca, Chantal Bizet, Paenibacillus faecis sp. nov., isolated from human faeces, International Journal of Systematic and Evolutionary Microbiology, 2015, 65 (12), pp.4621-4626. ⟨10.1099/ijsem.0.000622⟩.
• 2015
  Gueguen C, Bouley J, Moussu H, Luce S, Duchateau M, Chamot-Rooke J, Pallardy M, Lombardi V, Nony E, Baron-Bodo V, Mascarell L, Moingeon P, , Changes in markers associated with dendritic cells driving the differentiation of either TH2 cells or regulatory T cells correlate with clinical benefit during allergen immunotherapy., J Allergy Clin Immunol 2016 Feb; 137(2): 545-58.
• 2015
  Azevedo R, Bernardes M, Fonseca J, Lima A, , Smartphone application for rheumatoid arthritis self-management: cross-sectional study revealed the usefulness, willingness to use and patients’ needs., Rheumatol Int 2015 Oct; 35(10): 1675-85.
• 2015
  Azevedo R, Ferreira JA, Peixoto A, Neves M, Sousa N, Lima A, Santos LL, , Emerging antibody-based therapeutic strategies for bladder cancer: A systematic review., J Control Release 2015 Sep; 214(): 40-61.
• 2015
  Morello E, Mallet A, Konto-Ghiorghi Y, Chaze T, Mistou MY, Oliva G, Oliveira L, Di Guilmi AM, Trieu-Cuot P, Dramsi S, Evidence for the Sialylation of PilA, the PI-2a Pilus-Associated Adhesin of Streptococcus agalactiae Strain NEM316, PLoS ONE 2015;10(9):e0138103.
• 2015
  O'Brien DP, Hernandez B, Durand D, Hourdel V, Sotomayor-Pérez AC, Vachette P, Ghomi M, Chamot-Rooke J, Ladant D, Brier S, Chenal A, Structural models of intrinsically disordered and calcium-bound folded states of a protein adapted for secretion., Sci Rep 2015 Sep; 5(): 14223.
• 2015
  Gault J, Ferber M, Machata S, Imhaus AF, Malosse C, Charles-Orszag A, Millien C, Bouvier G, Bardiaux B, Péhau-Arnaudet G, Klinge K, Podglajen I, Ploy MC, Seifert HS, Nilges M, Chamot-Rooke J, Duménil G, Neisseria meningitidis Type IV Pili Composed of Sequence Invariable Pilins Are Masked by Multisite Glycosylation, PLoS Pathog. 2015 Sep;11(9):e1005162.
• 2015
  Dupré M, Gilquin B, Fenaille F, Feraudet-Tarisse C, Dano J, Ferro M, Simon S, Junot C, Brun V, Becher F, , Multiplex quantification of protein toxins in human biofluids and food matrices using immunoextraction and high-resolution targeted mass spectrometry., Anal Chem 2015 Aug; 87(16): 8473-80.
• 2015
  Boubakri H, Seghezzi N, Duchateau M, Gominet M, Kofroňová O, Benada O, Mazodier P, Pernodet JL, The Absence of Pupylation (Prokaryotic Ubiquitin-Like Protein Modification) Affects Morphological and Physiological Differentiation in Streptomyces coelicolor, J. Bacteriol. 2015 Nov;197(21):3388-99.
• 2015
  Surinova S, Choi M, Tao S, Schüffler PJ, Chang CY, Clough T, Vysloužil K, Khoylou M, Srovnal J, Liu Y, Matondo M, Hüttenhain R, Weisser H, Buhmann JM, Hajdúch M, Brenner H, Vitek O, Aebersold R, Prediction of colorectal cancer diagnosis based on circulating plasma proteins, EMBO Mol Med 2015 Sep;7(9):1166-78.
• 2015
  Lima A, Bernardes M, Azevedo R, Medeiros R, Seabra V, , Pharmacogenomics of Methotrexate Membrane Transport Pathway: Can Clinical Response to Methotrexate in Rheumatoid Arthritis Be Predicted?, Int J Mol Sci 2015 Jun; 16(6): 13760-80.
• 2015
  Laurenceau R, Krasteva PV, Diallo A, Ouarti S, Duchateau M, Malosse C, Chamot-Rooke J, Fronzes R, Conserved Streptococcus pneumoniae spirosomes suggest a single type of transformation pilus in competence, PLoS Pathog. 2015 Apr;11(4):e1004835.
• 2015
  Azevedo AR, de Sousa HM, Monteiro JA, Lima AR, , Future perspectives of Smartphone applications for rheumatic diseases self-management., Rheumatol Int 2015 Mar; 35(3): 419-31.
• 2015
  Nury C, Redeker V, Dautrey S, Romieu A, van der Rest G, Renard PY, Melki R, Chamot-Rooke J, A novel bio-orthogonal cross-linker for improved protein/protein interaction analysis, Anal. Chem. 2015 Feb;87(3):1853-60.
• 2014
  Liu Y, Huang H, Liu P, Su X, Gao Z, Guo L, Zhang Y, [The status of pertussis infection and molecular epidemiological characteristics of pertussis in Tianjin, 2013]., Zhonghua Liu Xing Bing Xue Za Zhi 2014 Dec; 35(12): 1358-61.
• 2014
  Lima A, Bernardes M, Azevedo R, Monteiro J, Sousa H, Medeiros R, Seabra V, , SLC19A1, SLC46A1 and SLCO1B1 polymorphisms as predictors of methotrexate-related toxicity in Portuguese rheumatoid arthritis patients., Toxicol Sci 2014 Nov; 142(1): 196-209.
• 2014
  Meola A, Deville C, Jeffers SA, Guardado-Calvo P, Vasiliauskaite I, Sizun C, Girard-Blanc C, Malosse C, van Heijenoort C, Chamot-Rooke J, Krey T, Guittet E, Pêtres S, Rey FA, Bontems F, , Robust and low cost uniform (15)N-labeling of proteins expressed in Drosophila S2 cells and Spodoptera frugiperda Sf9 cells for NMR applications., J Struct Biol 2014 Oct; 188(1): 71-8.
• 2014
  Rosenberger G, Koh CC, Guo T, Röst HL, Kouvonen P, Collins BC, Heusel M, Liu Y, Caron E, Vichalkovski A, Faini M, Schubert OT, Faridi P, Ebhardt HA, Matondo M, Lam H, Bader SL, Campbell DS, Deutsch EW, Moritz RL, Tate S, Aebersold R, A repository of assays to quantify 10,000 human proteins by SWATH-MS, Sci Data 2014;1:140031.
• 2014
  Chen Q, Boulanger A, Hinton DM, Stibitz S, Strong inhibition of fimbrial 3 subunit gene transcription by a novel downstream repressive element in Bordetella pertussis., Mol Microbiol 2014 Aug; 93(4): 748-58.
• 2014
  Heikkinen AT, Friedlein A, Matondo M, Hatley OJ, Petsalo A, Juvonen R, Galetin A, Rostami-Hodjegan A, Aebersold R, Lamerz J, Dunkley T, Cutler P, Parrott N, Quantitative ADME proteomics – CYP and UGT enzymes in the Beagle dog liver and intestine, Pharm. Res. 2015 Jan;32(1):74-90.
• 2014
  Magalie Duchateau, Thomas J.D. Jørgensen, Ophélie Robine, Edith Nicol, Christian Malosse, Julia Chamot-Rooke, Guillaume van der Rest, Ion source parameters and hydrogen scrambling in the ECD of selectively deuterated peptides, IJMS, 2014, 367, 21:27.
• 2014
  Chaze T, Guillot A, Valot B, Langella O, Chamot-Rooke J, Di Guilmi AM, Trieu-Cuot P, Dramsi S, Mistou MY, O-Glycosylation of the N-terminal region of the serine-rich adhesin Srr1 of Streptococcus agalactiae explored by mass spectrometry, Mol. Cell Proteomics 2014 Sep;13(9):2168-82.
• 2014
  Morrison LJ, Chamot-Rooke J, Wysocki VH, IR action spectroscopy shows competitive oxazolone and diketopiperazine formation in peptides depends on peptide length and identity of terminal residue in the departing fragment, Analyst 2014 May;139(9):2137-43.
• 2014
  Subota I, Julkowska D, Vincensini L, Reeg N, Buisson J, Blisnick T, Huet D, Perrot S, Santi-Rocca J, Duchateau M, Hourdel V, Rousselle JC, Cayet N, Namane A, Chamot-Rooke J, Bastin P, Proteomic analysis of intact flagella of procyclic Trypanosoma brucei cells identifies novel flagellar proteins with unique sub-localization and dynamics, Mol. Cell Proteomics 2014 Jul;13(7):1769-86.
• 2014
  Lima A, Bernardes M, Sousa H, Azevedo R, Costa L, Ventura F, Seabra V, Medeiros R, , SLC19A1 80G allele as a biomarker of methotrexate-related gastrointestinal toxicity in Portuguese rheumatoid arthritis patients., Pharmacogenomics 2014 Apr; 15(6): 807-20.
• 2014
  Gault J, Malosse C, Machata S, Millien C, Podglajen I, Ploy MC, Costello CE, Duménil G, Chamot-Rooke J, Complete posttranslational modification mapping of pathogenic Neisseria meningitidis pilins requires top-down mass spectrometry, Proteomics 2014 May;14(10):1141-51.
• 2014
  Lima A, Seabra V, Bernardes M, Azevedo R, Sousa H, Medeiros R, , Role of key TYMS polymorphisms on methotrexate therapeutic outcome in portuguese rheumatoid arthritis patients., PLoS One 2014 ; 9(10): e108165.
• 2014
  Lima A, Monteiro J, Bernardes M, Sousa H, Azevedo R, Seabra V, Medeiros R, , Prediction of methotrexate clinical response in Portuguese rheumatoid arthritis patients: implication of MTHFR rs1801133 and ATIC rs4673993 polymorphisms., Biomed Res Int 2014 ; 2014(): 368681.
• 2014
  Lima A, Sousa H, Monteiro J, Azevedo R, Medeiros R, Seabra V, , Genetic polymorphisms in low-dose methotrexate transporters: current relevance as methotrexate therapeutic outcome biomarkers., Pharmacogenomics 2014 ; 15(12): 1611-35.
• 2013
  Gerster S, Kwon T, Ludwig C, Matondo M, Vogel C, Marcotte EM, Aebersold R, Bühlmann P, Statistical approach to protein quantification, Mol. Cell Proteomics 2014 Feb;13(2):666-77.
• 2013
  Gault J, Malosse C, Duménil G, Chamot-Rooke J, A combined mass spectrometry strategy for complete posttranslational modification mapping of Neisseria meningitidis major pilin, J Mass Spectrom 2013 Nov;48(11):1199-206.
• 2013
  Lima A, Azevedo R, Sousa H, Seabra V, Medeiros R, , Current approaches for TYMS polymorphisms and their importance in molecular epidemiology and pharmacogenetics., Pharmacogenomics 2013 Aug; 14(11): 1337-51.
• 2013
  Laurenceau R, Péhau-Arnaudet G, Baconnais S, Gault J, Malosse C, Dujeancourt A, Campo N, Chamot-Rooke J, Le Cam E, Claverys JP, Fronzes R, A type IV pilus mediates DNA binding during natural transformation in Streptococcus pneumoniae, PLoS Pathog. 2013;9(6):e1003473.
• 2013
  Quinton L, Servent D, Girard E, Molgó J, Le Caer JP, Malosse C, Haidar el A, Lecoq A, Gilles N, Chamot-Rooke J, Identification and functional characterization of a novel α-conotoxin (EIIA) from Conus ermineus, Anal Bioanal Chem 2013 Jun;405(15):5341-51.
• 2013
  Smith LM, Kelleher NL, , Proteoform: a single term describing protein complexity, Nat. Methods 2013 Mar;10(3):186-7.
• 2013
  Gucinski AC, Chamot-Rooke J, Steinmetz V, Somogyi Á, Wysocki VH, Influence of N-terminal residue composition on the structure of proline-containing b2+ ions, J Phys Chem A 2013 Feb;117(6):1291-8.
• 2013
  Enomoto H, Nottelet B, Halifa SA, Enjalbal C, Dupré M, Tailhades J, Coudane J, Subra G, Martinez J, Amblard M, , Synthesis of peptide-grafted comb polypeptides via polymerisation of NCA-peptides., Chem Commun (Camb) 2013 Jan; 49(4): 409-11.
• 2012
  Dupré M, Enjalbal C, Cantel S, Martinez J, Megouda N, Hadjersi T, Boukherroub R, Coffinier Y, , Investigation of silicon-based nanostructure morphology and chemical termination on laser desorption ionization mass spectrometry performance., Anal Chem 2012 Dec; 84(24): 10637-44.
• 2012
  Dupré M, Cantel S, Durand JO, Martinez J, Enjalbal C, , Silica nanoparticles pre-spotted onto target plate for laser desorption/ionization mass spectrometry analyses of peptides., Anal Chim Acta 2012 Sep; 741(): 47-57.
• 2012
  van de Guchte M, Chaze T, Jan G, Mistou MY, Properties of probiotic bacteria explored by proteomic approaches, Curr. Opin. Microbiol. 2012 Jun;15(3):381-9.
• 2012
  Gucinski AC, Chamot-Rooke J, Nicol E, Somogyi Á, Wysocki VH, Structural influences on preferential oxazolone versus diketopiperazine b(2+) ion formation for histidine analogue-containing peptides, J Phys Chem A 2012 May;116(17):4296-304.
• 2012
  Dupré M, Coffinier Y, Boukherroub R, Cantel S, Martinez J, Enjalbal C, , Laser desorption ionization mass spectrometry of protein tryptic digests on nanostructured silicon plates., J Proteomics 2012 Apr; 75(7): 1973-90.
• 2012
  Moss CL, Chamot-Rooke J, Nicol E, Brown J, Campuzano I, Richardson K, Williams JP, Bush MF, Bythell B, Paizs B, Turecek F, Assigning structures to gas-phase peptide cations and cation-radicals. An infrared multiphoton dissociation, ion mobility, electron transfer, and computational study of a histidine peptide ion, J Phys Chem B 2012 Mar;116(10):3445-56.
• 2012
  Dupré M, Cantel S, Martinez J, Enjalbal C, , Occurrence of C-terminal residue exclusion in peptide fragmentation by ESI and MALDI tandem mass spectrometry., J Am Soc Mass Spectrom 2012 Feb; 23(2): 330-46.
• 2011
  Zhang Q, Huang Y, Zhang Y, Fang X, Claes A, Duchateau M, Namane A, Lopez-Rubio JJ, Pan W, Scherf A, A critical role of perinuclear filamentous actin in spatial repositioning and mutually exclusive expression of virulence genes in malaria parasites, Cell Host Microbe 2011 Nov;10(5):451-63.
• 2011
  Polge C, Heng AE, Jarzaguet M, Ventadour S, Claustre A, Combaret L, Béchet D, Matondo M, Uttenweiler-Joseph S, Monsarrat B, Attaix D, Taillandier D, Muscle actin is polyubiquitinylated in vitro and in vivo and targeted for breakdown by the E3 ligase MuRF1, FASEB J. 2011 Nov;25(11):3790-802.
• 2011
  van der Rest G, Hui R, Frison G, Chamot-Rooke J, Dissociation channel dependence on peptide size observed in electron capture dissociation of tryptic peptides, J. Am. Soc. Mass Spectrom. 2011 Sep;22(9):1631-44.
• 2011
  Selevsek N, Matondo M, Sanchez Carbayo M, Aebersold R, Domon B, Systematic quantification of peptides/proteins in urine using selected reaction monitoring, Proteomics 2011 Mar;11(6):1135-47.
• 2011
  Court M, Selevsek N, Matondo M, Allory Y, Garin J, Masselon CD, Domon B, Toward a standardized urine proteome analysis methodology, Proteomics 2011 Mar;11(6):1160-71.
• 2011
  Chamot-Rooke J, Mikaty G, Malosse C, Soyer M, Dumont A, Gault J, Imhaus AF, Martin P, Trellet M, Clary G, Chafey P, Camoin L, Nilges M, Nassif X, Duménil G, Posttranslational modification of pili upon cell contact triggers N. meningitidis dissemination, Science 2011 Feb;331(6018):778-82.
• 2011
  Dupré M, Cantel S, Verdié P, Martinez J, Enjalbal C, , Sequencing Lys-N proteolytic peptides by ESI and MALDI tandem mass spectrometry., J Am Soc Mass Spectrom 2011 Feb; 22(2): 265-79.
• 2010
  Rouget C, Quinton L, Maïga A, Gales C, Masuyer G, Malosse C, Chamot-Rooke J, Thai R, Mourier G, De Pauw E, Gilles N, Servent D, Identification of a novel snake peptide toxin displaying high affinity and antagonist behaviour for the α2-adrenoceptors, Br. J. Pharmacol. 2010 Nov;161(6):1361-74.
• 2010
  Turecek F, Chung TW, Moss CL, Wyer JA, Ehlerding A, Holm AI, Zettergren H, Nielsen SB, Hvelplund P, Chamot-Rooke J, Bythell B, Paizs B, The histidine effect. Electron transfer and capture cause different dissociations and rearrangements of histidine peptide cation-radicals, J. Am. Chem. Soc. 2010 Aug;132(31):10728-40.
• 2010
  Brun E, Blouquit Y, Duchambon P, Malosse C, Chamot-Rooke J, Sicard-Roselli C, Oxidative stress induces mainly human centrin 2 polymerisation, Int. J. Radiat. Biol. 2010 Aug;86(8):657-68.
• 2010
  Gucinski AC, Somogyi A, Chamot-Rooke J, Wysocki VH, Separation and identification of structural isomers by quadrupole collision-induced dissociation-hydrogen/deuterium exchange-infrared multiphoton dissociation (QCID-HDX-IRMPD), J. Am. Soc. Mass Spectrom. 2010 Aug;21(8):1329-38.
• 2009
  Perkins BR, Chamot-Rooke J, Yoon SH, Gucinski AC, Somogyi A, Wysocki VH, Evidence of diketopiperazine and oxazolone structures for HA b2+ ion, J. Am. Chem. Soc. 2009 Dec;131(48):17528-9.
• 2009
  Matondo M, Bousquet-Dubouch MP, Gallay N, Uttenweiler-Joseph S, Recher C, Payrastre B, Manenti S, Monsarrat B, Burlet-Schiltz O, Proteasome inhibitor-induced apoptosis in acute myeloid leukemia: a correlation with the proteasome status, Leuk. Res. 2010 Apr;34(4):498-506.
• 2009
  Chaze T, Meunier B, Chambon C, Jurie C, Picard B, Proteome dynamics during contractile and metabolic differentiation of bovine foetal muscle, Animal 2009 Jul;3(7):980-1000.
• 2009
  Chaze T, Meunier B, Chambon C, Jurie C, Picard B, Proteome dynamics during contractile and metabolic differentiation of bovine foetal muscle, Animal 2009 Jul;3(7):980-1000.
• 2009
  Bousquet-Dubouch MP, Baudelet E, Guérin F, Matondo M, Uttenweiler-Joseph S, Burlet-Schiltz O, Monsarrat B, Affinity purification strategy to capture human endogenous proteasome complexes diversity and to identify proteasome-interacting proteins, Mol. Cell Proteomics 2009 May;8(5):1150-64.
• 2008
  Yoon SH, Chamot-Rooke J, Perkins BR, Hilderbrand AE, Poutsma JC, Wysocki VH, IRMPD spectroscopy shows that AGG forms an oxazolone b2+ ion, J. Am. Chem. Soc. 2008 Dec;130(52):17644-5.
• 2008
  Frison G, van der Rest G, Turecek F, Besson T, Lemaire J, Maître P, Chamot-Rooke J, Structure of electron-capture dissociation fragments from charge-tagged peptides probed by tunable infrared multiple photon dissociation, J. Am. Chem. Soc. 2008 Nov;130(45):14916-7.
• 2008
  Chaze T, Meunier B, Chambon C, Jurie C, Picard B, In vivo proteome dynamics during early bovine myogenesis, Proteomics 2008 Oct;8(20):4236-48.
• 2008
  Bousquet-Dubouch MP, Uttenweiler-Joseph S, Ducoux-Petit M, Matondo M, Monsarrat B, Burlet-Schiltz O, Purification and proteomic analysis of 20S proteasomes from human cells, Methods Mol. Biol. 2008;432:301-20.
• 2007
  André M, Morelle W, Planchon S, Milhiet PE, Rubinstein E, Mollicone R, Chamot-Rooke J, Le Naour F, Glycosylation status of the membrane protein CD9P-1, Proteomics 2007 Nov;7(21):3880-95.
• 2007
  Chamot-Rooke J, Malosse C, Frison G, Turecek F, Electron capture in charge-tagged peptides. Evidence for the role of excited electronic states, J. Am. Soc. Mass Spectrom. 2007 Dec;18(12):2146-61.
• 2007
  Chamot-Rooke J, Rousseau B, Lanternier F, Mikaty G, Mairey E, Malosse C, Bouchoux G, Pelicic V, Camoin L, Nassif X, Duménil G, Alternative Neisseria spp. type IV pilin glycosylation with a glyceramido acetamido trideoxyhexose residue, Proc. Natl. Acad. Sci. U.S.A. 2007 Sep;104(37):14783-8.
• 2007
  Chamot-Rooke J, van der Rest G, Dalleu A, Bay S, Lemoine J, The combination of electron capture dissociation and fixed charge derivatization increases sequence coverage for O-glycosylated and O-phosphorylated peptides, J. Am. Soc. Mass Spectrom. 2007 Aug;18(8):1405-13.
• 2007
  Hardouin J, Lasserre JP, Canelle L, Duchateau M, Vlieghe C, Choquet-Kastylevsky G, Joubert-Caron R, Caron M, Usefulness of autoantigens depletion to detect autoantibody signatures by multiple affinity protein profiling, J Sep Sci 2007 Feb;30(3):352-8.
• 2007
  Atakan Ablay P, Ozcengiz E, [Rapid purification of Bordetella pertussis fimbria 2, 3 proteins and their immunogenicities]., Mikrobiyol Bul 2007 Jan; 41(1): 11-20.
• 2006
  Hardouin J, Duchateau M, Canelle L, Vlieghe C, Joubert-Caron R, Caron M, Thiophilic adsorption revisited, J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 2007 Jan;845(2):226-31.
• 2006
  Chaze T, Bouley J, Chambon C, Barboiron C, Picard B, Mapping of alkaline proteins in bovine skeletal muscle, Proteomics 2006 Apr;6(8):2571-5.
• 2006
  Quinton L, Le Caër JP, Vinh J, Gilles N, Chamot-Rooke J, Fourier transform mass spectrometry: a powerful tool for toxin analysis, Toxicon 2006 May;47(6):715-26.
• 2006
  André M, Le Caer JP, Greco C, Planchon S, El Nemer W, Boucheix C, Rubinstein E, Chamot-Rooke J, Le Naour F, Proteomic analysis of the tetraspanin web using LC-ESI-MS/MS and MALDI-FTICR-MS, Proteomics 2006 Mar;6(5):1437-49.
• 2006
  Hardouin J, Duchateau M, Joubert-Caron R, Caron M, Usefulness of an integrated microfluidic device (HPLC-Chip-MS) to enhance confidence in protein identification by proteomics, Rapid Commun. Mass Spectrom. 2006;20(21):3236-44.
• 2005
  Quinton L, Le Caer JP, Phan G, Ligny-Lemaire C, Bourdais-Jomaron J, Ducancel F, Chamot-Rooke J, Characterization of toxins within crude venoms by combined use of Fourier transform mass spectrometry and cloning, Anal. Chem. 2005 Oct;77(20):6630-9.
• 2005
  Godfroid F, Denoël P, Poolman J, Are vaccination programs and isolate polymorphism linked to pertussis re-emergence?, Expert Rev Vaccines 2005 Oct; 4(5): 757-78.
• 2005
  Froment C, Uttenweiler-Joseph S, Bousquet-Dubouch MP, Matondo M, Borges JP, Esmenjaud C, Lacroix C, Monsarrat B, Burlet-Schiltz O, A quantitative proteomic approach using two-dimensional gel electrophoresis and isotope-coded affinity tag labeling for studying human 20S proteasome heterogeneity, Proteomics 2005 Jun;5(9):2351-63.
• 2005
  Moulédous L, Neasta J, Uttenweiler-Joseph S, Stella A, Matondo M, Corbani M, Monsarrat B, Meunier JC, Long-term morphine treatment enhances proteasome-dependent degradation of G beta in human neuroblastoma SH-SY5Y cells: correlation with onset of adenylate cyclase sensitization, Mol. Pharmacol. 2005 Aug;68(2):467-76.
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