Timeline

Vincent Guillemot

Research Engineer

26 Sep 2023

project

Deep Learning group

17 Jul 2023

course

Bioinformatics program for PhD students 2023 2024

11 Jul 2023

project

Data Integration Group

29 Dec 2022

publication

Susceptibilities of CNS Cells towards Rabies Virus Infection Is Linked to Cellular Innate Immune Responses.

29 Nov 2022

course

2ème Ecole de Bioinformatique AVIESAN – IFB – INSERM Niveau 2

11 Jul 2022

course

Bioinformatics program for PhD students 2022-2023

01 May 2022

publication

High prevalence of small intestine bacteria overgrowth and asymptomatic carriage of enteric pathogens in stunted children in Antananarivo, Madagascar.

01 Apr 2022

publication

The genetic architecture of language functional connectivity.

10 Feb 2022

software

SHADE : SHiny Application for Designing Experiments

01 Jan 2022

publication

Alterations of the axon initial segment in multiple sclerosis grey matter.

22 Oct 2021

publication

Dichotomous metabolic networks govern human ILC2 proliferation and function.

06 Oct 2021

event

2021 Computational Biology Department Days

11 Aug 2021

course

Bioinformatics program for PhD students 2021-2022

11 Aug 2021

publication

Gene association networks from microarray data using a regularized estimation of partial correlation based on PLS regression.

01 Aug 2021

publication

Multitrait GWAS to connect disease variants and biological mechanisms.

16 Apr 2021

course

1ème Ecole de Bioinformatique AVIESAN – IFB – INSERM Niveau 2

01 Apr 2021

publication

Immune response profiling of patients with spondyloarthritis reveals signalling networks mediating TNF-blocker function in vivo.

09 Mar 2021

publication

Host genetic control of natural killer cell diversity revealed in the Collaborative Cross.

24 Sep 2020

course

Bioinformatics program for PhD students 2020-2021

31 Jul 2020

project

Oncobiomics – THE (heterogenity tumor ecosystem)

01 Mar 2020

publication

JASS: command line and web interface for the joint analysis of GWAS results.

01 Apr 2019

publication

Adjusting for Principal Components of Molecular Phenotypes Induces Replicating False Positives.

01 Jan 2019

publication

A constrained singular value decomposition method that integrates sparsity and orthogonality.

01 Jan 2019

publication

Exploration Deficits Under Ecological Conditions as a Marker of Apathy in Frontotemporal Dementia.

27 Nov 2018

publication

A strategy for multimodal data integration: application to biomarkers identification in spinocerebellar ataxia.

01 Nov 2018

publication

Continuation of Nesterov’s Smoothing for Regression With Structured Sparsity in High-Dimensional Neuroimaging.

19 Jul 2018

software

JASS – Joint Analysis of (GWAS) Summary Statistics

19 Jul 2018

course

Introduction to data analysis

19 Jul 2018

course

Introduction to Data Analysis

19 Jul 2018

course

Introduction to Data Analysis

28 Mar 2018

team

Expertise group : SysBio – System Bioinformatics

01 Dec 2017

publication

Covariate selection for association screening in multiphenotype genetic studies.

07 Sep 2017

publication

Modeling a linkage between blood transcriptional expression and activity in brain regions to infer the phenotype of schizophrenia patients.

01 Apr 2017

publication

Adaptive human immunity drives remyelination in a mouse model of demyelination.

01 Oct 2016

publication

Clinical-genetic model predicts incident impulse control disorders in Parkinson’s disease.

29 Sep 2016

team

Statistical Genetics

01 May 2016

publication

Transcriptome Analysis of Peripheral Blood in Chronic Inflammatory Demyelinating Polyradiculoneuropathy Patients Identifies TNFR1 and TLR Pathways in the IVIg Response.

01 Dec 2015

publication

Hypomorphic variants of cationic amino acid transporter 3 in males with autism spectrum disorders.

01 Oct 2015

publication

Single-voxel (1)H spectroscopy in the human hippocampus at 3 T using the LASER sequence: characterization of neurochemical profile and reproducibility.

26 Jun 2015

team

Bioinformatics and Biostatistics HUB

01 Jul 2014

publication

Variable selection for generalized canonical correlation analysis.

01 Jan 2013

publication

Iterative reconstruction of high-dimensional Gaussian Graphical Models based on a new method to estimate partial correlations under constraints.

15 Oct 2012

publication

Significant correlation between a set of genetic polymorphisms and a functional brain network revealed by feature selection and sparse Partial Least Squares.

03 Jul 2012

publication

Receptor kinase profiles identify a rationale for multitarget kinase inhibition in immature T-ALL

01 Jul 2011

publication

Use of pretransformation to cope with extreme values in important candidate features.

01 Jan 2011

publication

Graph constrained discriminant analysis: a new method for the integration of a graph into a classification process.

01 Dec 2010

publication

Distance between homologous chromosomes results from chromosome positioning constraints.

15 Aug 2010

publication

Over-optimism in bioinformatics: an illustration.

01 Oct 2008

publication

A little guide for advanced search:

Deep Learning group

Bioinformatics program for PhD students 2023 2024

Data Integration Group

Susceptibilities of CNS Cells towards Rabies Virus Infection Is Linked to Cellular Innate Immune Responses.

2ème Ecole de Bioinformatique AVIESAN – IFB – INSERM Niveau 2

Bioinformatics program for PhD students 2022-2023

High prevalence of small intestine bacteria overgrowth and asymptomatic carriage of enteric pathogens in stunted children in Antananarivo, Madagascar.

The genetic architecture of language functional connectivity.

SHADE : SHiny Application for Designing Experiments

Alterations of the axon initial segment in multiple sclerosis grey matter.

Dichotomous metabolic networks govern human ILC2 proliferation and function.

2021 Computational Biology Department Days

Bioinformatics program for PhD students 2021-2022

Gene association networks from microarray data using a regularized estimation of partial correlation based on PLS regression.

Multitrait GWAS to connect disease variants and biological mechanisms.

1ème Ecole de Bioinformatique AVIESAN – IFB – INSERM Niveau 2

Immune response profiling of patients with spondyloarthritis reveals signalling networks mediating TNF-blocker function in vivo.

Host genetic control of natural killer cell diversity revealed in the Collaborative Cross.

Bioinformatics program for PhD students 2020-2021

Oncobiomics – THE (heterogenity tumor ecosystem)

JASS: command line and web interface for the joint analysis of GWAS results.

Adjusting for Principal Components of Molecular Phenotypes Induces Replicating False Positives.

A constrained singular value decomposition method that integrates sparsity and orthogonality.

Exploration Deficits Under Ecological Conditions as a Marker of Apathy in Frontotemporal Dementia.

A strategy for multimodal data integration: application to biomarkers identification in spinocerebellar ataxia.

Continuation of Nesterov’s Smoothing for Regression With Structured Sparsity in High-Dimensional Neuroimaging.

JASS – Joint Analysis of (GWAS) Summary Statistics

Introduction to data analysis

Introduction to Data Analysis

Introduction to Data Analysis

Expertise group : SysBio – System Bioinformatics

Covariate selection for association screening in multiphenotype genetic studies.

Modeling a linkage between blood transcriptional expression and activity in brain regions to infer the phenotype of schizophrenia patients.

Adaptive human immunity drives remyelination in a mouse model of demyelination.

Clinical-genetic model predicts incident impulse control disorders in Parkinson’s disease.

Statistical Genetics

Transcriptome Analysis of Peripheral Blood in Chronic Inflammatory Demyelinating Polyradiculoneuropathy Patients Identifies TNFR1 and TLR Pathways in the IVIg Response.

Hypomorphic variants of cationic amino acid transporter 3 in males with autism spectrum disorders.

Single-voxel (1)H spectroscopy in the human hippocampus at 3 T using the LASER sequence: characterization of neurochemical profile and reproducibility.

Bioinformatics and Biostatistics HUB

Variable selection for generalized canonical correlation analysis.

Iterative reconstruction of high-dimensional Gaussian Graphical Models based on a new method to estimate partial correlations under constraints.

Significant correlation between a set of genetic polymorphisms and a functional brain network revealed by feature selection and sparse Partial Least Squares.

Receptor kinase profiles identify a rationale for multitarget kinase inhibition in immature T-ALL

Use of pretransformation to cope with extreme values in important candidate features.

Graph constrained discriminant analysis: a new method for the integration of a graph into a classification process.

Distance between homologous chromosomes results from chromosome positioning constraints.

Over-optimism in bioinformatics: an illustration.

Improving interprofessional teamwork in obstetrics: a Crew Resource Management based training programme