Timeline

Stevenn Volant

Research Engineer

22 Dec 2023

project

From the source to the user end: deciphering the impact of microbiome and water parameters on opportunistic waterborne pathogens (MicroPathWater)

01 Dec 2023

publication

Parvimonas micra, an oral pathobiont associated with colorectal cancer, epigenetically reprograms human colonocytes.

01 Sep 2023

publication

Comprehensive Characterization of Viral Diversity of Female Mosquitoes in Madagascar

12 Apr 2023

publication

Primary role of type I interferons for the induction of functionally optimal antigen-specific CD8+ T cells in HIV infection.

29 Nov 2022

course

11ème école de bioinformatique AVIESAN-INSERM-IFB

24 Aug 2022

publication

Sexual dysfunction among males and females with bipolar disorder and healthy subjects: The burden of illness severity.

05 Apr 2022

publication

Reprogramming dysfunctional CD8+ T cells to promote properties associated with natural HIV control.

10 Feb 2022

software

SHADE : SHiny Application for Designing Experiments

03 Feb 2022

course

Multiple roles of RNAs

26 Jan 2022

publication

Low CCR5 expression protects HIV-specific CD4+ T cells of elite controllers from viral entry.

01 Jan 2022

publication

The role of glycosylphosphatidylinositol (gpi) anchored proteins in Cryptococcusneoformans.

04 Oct 2021

project

(SOCSET) Studying Olfactory and Cognitive Symptoms Evolution in long-COVID Patients

01 Mar 2021

publication

Mining zebrafish microbiota reveals key community-level resistance against fish pathogen infection.

18 Feb 2021

publication

Optimal combination of early biomarkers for infection and sepsis diagnosis in the emergency department: The BIPS study.

24 Sep 2020

course

Bioinformatics program for PhD students 2020-2021

10 Aug 2020

publication

SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis.

31 Jul 2020

project

Oncobiomics – THE (heterogenity tumor ecosystem)

01 Jul 2020

publication

Antiapoptotic Clone 11-Derived Peptides Induce In Vitro Death of CD4+ T Cells Susceptible to HIV-1 Infection.

16 May 2020

publication

Allostatic load, emotional hyper-reactivity, and functioning in individuals with bipolar disorder

26 Feb 2020

publication

Leucine-Rich Immune Factor APL1 Is Associated With Specific Modulation of Enteric Microbiome Taxa in the Asian Malaria Mosquito Anopheles stephensi.

17 Dec 2019

publication

Ubiquitination of Listeria Virulence Factor InlC Contributes to the Host Response to Infection.

01 Jul 2019

publication

Metabolic plasticity of HIV-specific CD8+ T cells is associated with enhanced antiviral potential and natural control of HIV-1 infection.

01 Jul 2019

publication

Cryptococcus neoformans resists to drastic conditions by switching to viable but non-culturable cell phenotype.

05 Mar 2019

publication

Cellular Metabolism Is a Major Determinant of HIV-1 Reservoir Seeding in CD4+ T Cells and Offers an Opportunity to Tackle Infection.

11 Oct 2018

publication

Activation Levels, Cardiovascular Risk, and Functional Impairment in Remitted Bipolar Patients: Clinical Relevance of a Dimensional Approach

03 Aug 2018

publication

Combined bacterial and fungal intestinal microbiota analyses: Impact of storage conditions and DNA extraction protocols

19 Jul 2018

course

Introduction to data analysis

19 Jul 2018

course

Morning session – Data analysis using R

19 Jul 2018

course

Introduction to Data Analysis

19 Jul 2018

course

Introduction to Data Analysis

28 Mar 2018

team

Expertise group : Stats

27 Mar 2018

publication

Diverse laboratory colonies of Aedes aegypti harbor the same adult midgut bacterial microbiome

20 Aug 2017

news

Hot off the press: microbiota of mosquito larvae influences adult vectorial capacity

16 Aug 2017

publication

Carryover effects of larval exposure to different environmental bacteria drive adult trait variation in a mosquito vector

20 Jul 2016

publication

DNA minicircles clarify the specific role of DNA structure on retroviral integration

13 Jul 2016

publication

MEMHDX: an interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets.

23 Jun 2016

software

MEMHDX – Mixed Effects Models for HDX experiments

17 May 2016

publication

Bacteriocin from epidemic Listeria strains alters the host intestinal microbiota to favor infection.

10 May 2016

software

SHAMAN: SHiny Application for Metagenomic ANalysis

10 May 2016

project

Host microbiota modification by epidemic Listeria monocytogenes

06 May 2016

news

A bacteriocin from epidemic Listeria strains alters the host intestinal microbiota to favor infection (PNAS May 2nd, 2016)

11 Mar 2016

publication

Bacteriophages to reduce gut carriage of antibiotic resistant uropathogens with low impact on microbiota composition

21 Jul 2015

project

Development of a new statistical tool for the analysis of large HDX-MS data sets

20 Jul 2015

project

16S rDNA data analysis

26 Jun 2015

team

Bioinformatics and Biostatistics HUB

01 Jul 2014

publication

Hidden Markov Models with mixtures as emission distributions

01 Aug 2012

publication

Variational Bayes approach for model aggregation in unsupervised classification with Markovian dependency

01 Jul 2009

publication

A little guide for advanced search:

From the source to the user end: deciphering the impact of microbiome and water parameters on opportunistic waterborne pathogens (MicroPathWater)

Parvimonas micra, an oral pathobiont associated with colorectal cancer, epigenetically reprograms human colonocytes.

Comprehensive Characterization of Viral Diversity of Female Mosquitoes in Madagascar

Primary role of type I interferons for the induction of functionally optimal antigen-specific CD8+ T cells in HIV infection.

11ème école de bioinformatique AVIESAN-INSERM-IFB

Sexual dysfunction among males and females with bipolar disorder and healthy subjects: The burden of illness severity.

Reprogramming dysfunctional CD8+ T cells to promote properties associated with natural HIV control.

SHADE : SHiny Application for Designing Experiments

Multiple roles of RNAs

Low CCR5 expression protects HIV-specific CD4+ T cells of elite controllers from viral entry.

The role of glycosylphosphatidylinositol (gpi) anchored proteins in Cryptococcusneoformans.

(SOCSET) Studying Olfactory and Cognitive Symptoms Evolution in long-COVID Patients

Mining zebrafish microbiota reveals key community-level resistance against fish pathogen infection.

Optimal combination of early biomarkers for infection and sepsis diagnosis in the emergency department: The BIPS study.

Bioinformatics program for PhD students 2020-2021

SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis.

Oncobiomics – THE (heterogenity tumor ecosystem)

Antiapoptotic Clone 11-Derived Peptides Induce In Vitro Death of CD4+ T Cells Susceptible to HIV-1 Infection.

Allostatic load, emotional hyper-reactivity, and functioning in individuals with bipolar disorder

Leucine-Rich Immune Factor APL1 Is Associated With Specific Modulation of Enteric Microbiome Taxa in the Asian Malaria Mosquito Anopheles stephensi.

Ubiquitination of Listeria Virulence Factor InlC Contributes to the Host Response to Infection.

Metabolic plasticity of HIV-specific CD8+ T cells is associated with enhanced antiviral potential and natural control of HIV-1 infection.

Cryptococcus neoformans resists to drastic conditions by switching to viable but non-culturable cell phenotype.

Cellular Metabolism Is a Major Determinant of HIV-1 Reservoir Seeding in CD4+ T Cells and Offers an Opportunity to Tackle Infection.

Activation Levels, Cardiovascular Risk, and Functional Impairment in Remitted Bipolar Patients: Clinical Relevance of a Dimensional Approach

Combined bacterial and fungal intestinal microbiota analyses: Impact of storage conditions and DNA extraction protocols

Introduction to data analysis

Morning session – Data analysis using R

Introduction to Data Analysis

Introduction to Data Analysis

Expertise group : Stats

Diverse laboratory colonies of Aedes aegypti harbor the same adult midgut bacterial microbiome

Hot off the press: microbiota of mosquito larvae influences adult vectorial capacity

Carryover effects of larval exposure to different environmental bacteria drive adult trait variation in a mosquito vector

DNA minicircles clarify the specific role of DNA structure on retroviral integration

MEMHDX: an interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets.

MEMHDX – Mixed Effects Models for HDX experiments

Bacteriocin from epidemic Listeria strains alters the host intestinal microbiota to favor infection.

SHAMAN: SHiny Application for Metagenomic ANalysis

Host microbiota modification by epidemic Listeria monocytogenes

A bacteriocin from epidemic Listeria strains alters the host intestinal microbiota to favor infection (PNAS May 2nd, 2016)

Bacteriophages to reduce gut carriage of antibiotic resistant uropathogens with low impact on microbiota composition

Development of a new statistical tool for the analysis of large HDX-MS data sets

16S rDNA data analysis

Bioinformatics and Biostatistics HUB

Hidden Markov Models with mixtures as emission distributions

Variational Bayes approach for model aggregation in unsupervised classification with Markovian dependency

Clustering based on Random Graph Model embedding Vertex Features