• 2024
  Maxime Mistretta, Mena Cimino, Pascal Campagne, Stevenn Volant, Etienne Kornobis, Olivier Hebert, Christophe Rochais, Patrick Dallemagne, Cédric Lecoutey, Camille Tisnerat, Alban Lepailleur, Yann Ayotte, Steven Laplante, Nicolas Gangneux, Monika Záhorszká, Jana Korduláková, Sophie Vichier-Guerre, Frédéric Bonhomme, Laura Pokorny, Marvin Albert, Jean-Yves Tinevez, Giulia Manina, Dynamic microfluidic single-cell screening identifies pheno-tuning compounds to potentiate tuberculosis therapy, Nature Communications, 2024, 15 (1), pp.4175. ⟨10.1038/s41467-024-48269-2⟩.
• 2024
  Renaud O, Aulner N, Salles A, Halidi N, Brunstein M, Mallet A, Aumayr K, Terjung S, Levy D, Lippens S, Verbavatz JM, Heuser T, Santarella-Mellwig R, Tinevez JY, Woller T, Botzki A, Cawthorne C, , Munck S, Staying on track – Keeping things running in a high-end scientific imaging core facility., J Microsc 2024 Jun; 294(3): 276-294.
• 2024
  Morel C, Lemerle E, Tsai FC, Obadia T, Srivastava N, Marechal M, Salles A, Albert M, Stefani C, Benito Y, Vandenesch F, Lamaze C, Vassilopoulos S, Piel M, Bassereau P, Gonzalez-Rodriguez D, Leduc C, Lemichez E, Caveolin-1 protects endothelial cells from extensive expansion of transcellular tunnel by stiffening the plasma membrane., Elife 2024 Mar; 12(): .
• 2024
  Girolamo DD, Benavente-Diaz M, Murolo M, Grimaldi A, Lopes PT, Evano B, Kuriki M, Gioftsidi S, Laville V, Tinevez JY, Letort G, Mella S, Tajbakhsh S, Comai G, Extraocular muscle stem cells exhibit distinct cellular properties associated with non-muscle molecular signatures, Development 2024 Feb; 151(4): .
• 2024
  García López de Haro C, Dallongeville S, Musset T, Gómez-de-Mariscal E, Sage D, Ouyang W, Muñoz-Barrutia A, Tinevez JY, Olivo-Marin JC, JDLL: a library to run deep learning models on Java bioimage informatics platforms., Nat Methods 2024 Jan; 21(1): 7-8.
• 2023
  Boëda B, Michel V, Etournay R, England P, Rigaud S, Mary H, Gobaa S, Etienne-Manneville S, SCRIB controls apical contractility during epithelial differentiation., J Cell Biol 2023 Dec; 222(12): .
• 2023
  Murielle Serres, Ronan Shaughnessy, Sophie Escot, Hussein Hammich, Frédérique Cuvelier, Audrey Salles, Murielle Rocancourt, Quentin Verdon, Anne-Lise Gaffuri, Yannick Sourigues, Gilles Malherbe, Leonid Velikovsky, Florian Chardon, Nathalie Sassoon, Jean-Yves Tinevez, Isabelle Callebaut, Etienne Formstecher, Anne Houdusse, Nicolas David, Olena Pylypenko, Arnaud Echard, MiniBAR/GARRE1 is a dual Rac and Rab effector required for ciliogenesis, Developmental Cell, 2023, 58, pp.1-18. ⟨10.1016/j.devcel.2023.09.010⟩.
• 2023
  Laure Mancini, Boris Guirao, Sara Ortica, Miriam Labusch, Felix Cheysson, Valentin Bonnet, Minh Son Phan, Sébastien Herbert, Pierre Mahou, Emilie Menant, Sébastien Bedu, Jean-Yves Tinevez, Charles Baroud, Emmanuel Beaurepaire, Yohanns Bellaiche, Laure Bally-Cuif, Nicolas Dray, Apical size and deltaA expression predict adult neural stem cell decisions along lineage progression, Science Advances , 2023, 9 (35), pp.eadg7519. ⟨10.1126/sciadv.adg7519⟩.
• 2023
  Uzum Z, Ershov D, Pavia MJ, Mallet A, Gorgette O, Plantard O, Sassera D, Stavru F, Three-dimensional images reveal the impact of the endosymbiont Midichloria mitochondrii on the host mitochondria., Nat Commun 2023 Jul; 14(1): 4133.
• 2023
  Carlos Garcia Lopez de Haro, Stephane Dallongeville, Thomas Musset, Estibaliz Gomez de Mariscal, Daniel Sage, Wei Ouyang, Arrate Munoz-Barrutia, Jean-Yves Tinevez, Jean-Christophe Olivo-Marin, JDLL: A library to run Deep Learning models on Java bioimage informatics platforms, Electrical Engineering and Systems Science > Image and Video Processing.
• 2023
  Xingi E, Koutsoudaki PN, Thanou I, Phan MS, Margariti M, Scheller A, Tinevez JY, Kirchhoff F, Thomaidou D, LPS-Induced Systemic Inflammation Affects the Dynamic Interactions of Astrocytes and Microglia with the Vasculature of the Mouse Brain Cortex., Cells 2023 May; 12(10): .
• 2023
  Simon F, Tinevez JY, van Teeffelen S, ExTrack characterizes transition kinetics and diffusion in noisy single-particle tracks., J Cell Biol 2023 May; 222(5): .
• 2023
  Scoca V, Morin R, Collard M, Tinevez JY, Di Nunzio F, HIV-induced membraneless organelles orchestrate post-nuclear entry steps., J Mol Cell Biol 2023 Apr; 14(11): .
• 2023
  Khalfi P, Suspène R, Raymond KA, Caval V, Caignard G, Berry N, Thiers V, Combredet C, Rufie C, Rigaud S, Ghozlane A, Volant S, Komarova AV, Tangy F, Vartanian JP, Antagonism of ALAS1 by the Measles Virus V protein contributes to degradation of the mitochondrial network and promotes interferon response., PLoS Pathog 2023 Feb; 19(2): e1011170.
• 2022
  Lydie Couturier, Juan Luna, Khalil Mazouni, Claire Mestdagh, Minh-Son Phan, Francis Corson, Francois Schweisguth, HaloTag-based reporters for sparse labeling and cell tracking, Fly, 2022, 16 (1), pp.360-366. ⟨10.1080/19336934.2022.2142460⟩.
• 2022
  Laure Mancini, Boris Guirao, Sara Ortica, Miriam Labusch, Felix Cheysson, Valentin Bonnet, Minh Son Phan, Sébastien Herbert, Pierre Mahou, Emilie Menant, Sébastien Bedu, Jean-Yves Tinevez, Charles Baroud, Emmanuel Beaurepaire, Yohanns Bellaiche, Laure Bally-Cuif, Nicolas Dray, Apical size and deltaA expression predict adult neural stem cell decisions along lineage progression, 2023.
• 2022
  Trébeau C, de Monvel JB, Altay G, Tinevez JY, Etournay R, , Extracting multiple surfaces from 3D microscopy images in complex biological tissues with the Zellige software tool., BMC Biol 2022 08; 20(1): 183.
• 2022
  Phan MS, Matho K, Beaurepaire E, Livet J, Chessel A, , nAdder: A scale-space approach for the 3D analysis of neuronal traces., PLoS Comput Biol 2022 07; 18(7): e1010211.
• 2022
  Ershov D, Phan MS, Pylvänäinen JW, Rigaud SU, Le Blanc L, Charles-Orszag A, Conway JRW, Laine RF, Roy NH, Bonazzi D, Duménil G, Jacquemet G, Tinevez JY, , TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines., Nat Methods 2022 Jun; (): .
• 2022
  Parada C, Banavar SP, Khalilian P, Rigaud S, Michaut A, Liu Y, Joshy DM, Campàs O, Gros J, , Mechanical feedback defines organizing centers to drive digit emergence., Dev Cell 2022 Apr; 57(7): 854-866.e6.
• 2022
  Torres R, Tinevez JY, Daoudi H, Lahlou G, Grislain N, Breil E, Sterkers O, Mosnier I, Nguyen Y, Ferrary E, , Best Fit 3D Basilar Membrane Reconstruction to Routinely Assess the Scalar Position of the Electrode Array after Cochlear Implantation., J Clin Med 2022 Apr; 11(8): .
• 2022
  Gaudin N, Martin Gil P, Boumendjel M, Ershov D, Pioche-Durieu C, Bouix M, Delobelle Q, Maniscalco L, Phan TBN, Heyer V, Reina-San-Martin B, Azimzadeh J, , Evolutionary conservation of centriole rotational asymmetry in the human centrosome., Elife 2022 Mar; 11(): .
• 2022
  Nunes Vicente F, Lelek M, Tinevez JY, Tran QD, Pehau-Arnaudet G, Zimmer C, Etienne-Manneville S, Giannone G, Leduc C, , Molecular organization and mechanics of single vimentin filaments revealed by super-resolution imaging., Sci Adv 2022 Feb; 8(8): eabm2696.
• 2021
  Berry N, Suspène R, Caval V, Khalfi P, Beauclair G, Rigaud S, Blanc H, Vignuzzi M, Wain-Hobson S, Vartanian JP, Herpes Simplex Virus Type 1 Infection Disturbs the Mitochondrial Network, Leading to Type I Interferon Production through the RNA Polymerase III/RIG-I Pathway., mBio 2021 Dec; 12(6): e0255721.
• 2021
  Meza-Torres J, Lelek M, Quereda JJ, Sachse M, Manina G, Ershov D, Tinevez JY, Radoshevich L, Maudet C, Chaze T, Giai Gianetto Q, Matondo M, Lecuit M, Martin-Verstraete I, Zimmer C, Bierne H, Dussurget O, Cossart P, Pizarro-Cerdá J, , Listeriolysin S: A bacteriocin from Listeria monocytogenes that induces membrane permeabilization in a contact-dependent manner., Proc Natl Acad Sci U S A 2021 Oct; 118(40): .
• 2021
  Dray N, Mancini L, Binshtok U, Cheysson F, Supatto W, Mahou P, Bedu S, Ortica S, Than-Trong E, Krecsmarik M, Herbert S, Masson JB, Tinevez JY, Lang G, Beaurepaire E, Sprinzak D, Bally-Cuif L, Dynamic spatiotemporal coordination of neural stem cell fate decisions occurs through local feedback in the adult vertebrate brain., Cell Stem Cell 2021 Aug; 28(8): 1457-1472.e12.
• 2021
  Robinot R, Hubert M, de Melo GD, Lazarini F, Bruel T, Smith N, Levallois S, Larrous F, Fernandes J, Gellenoncourt S, Rigaud S, Gorgette O, Thouvenot C, Trébeau C, Mallet A, Duménil G, Gobaa S, Etournay R, Lledo PM, Lecuit M, Bourhy H, Duffy D, Michel V, Schwartz O, Chakrabarti LA, SARS-CoV-2 infection induces the dedifferentiation of multiciliated cells and impairs mucociliary clearance., Nat Commun 2021 Jul; 12(1): 4354.
• 2021
  Herbert S, Valon L, Mancini L, Dray N, Caldarelli P, Gros J, Esposito E, Shorte SL, Bally-Cuif L, Aulner N, Levayer R, Tinevez JY, LocalZProjector and DeProj: a toolbox for local 2D projection and accurate morphometrics of large 3D microscopy images., BMC Biol 2021 Jul; 19(1): 136.
• 2021
  Martins GG, Cordelières FP, Colombelli J, D'Antuono R, Golani O, Guiet R, Haase R, Klemm AH, Louveaux M, Paul-Gilloteaux P, Tinevez JY, Miura K, , Highlights from the 2016-2020 NEUBIAS training schools for Bioimage Analysts: a success story and key asset for analysts and life scientists., F1000Res 2021 ; 10(): 334.
• 2020
  Tejada-Arranz A, Galtier E, El Mortaji L, Turlin E, Ershov D, De Reuse H, , The RNase J-Based RNA Degradosome Is Compartmentalized in the Gastric Pathogen Helicobacter pylori., mBio 2020 Sep; 11(5): .
• 2020
  Samassa F, Ferrari ML, Husson J, Mikhailova A, Porat Z, Sidaner F, Brunner K, Teo TH, Frigimelica E, Tinevez JY, Sansonetti PJ, Thoulouze MI, Phalipon A, , Shigella impairs human T lymphocyte responsiveness by hijacking actin cytoskeleton dynamics and T cell receptor vesicular trafficking., Cell Microbiol 2020 05; 22(5): e13166.
• 2020
  Dikec J, Olivier A, Bobée C, D'Angelo Y, Catellier R, David P, Filaine F, Herbert S, Lalanne C, Lalucque H, Monasse L, Rieu M, Ruprich-Robert G, Véber A, Chapeland-Leclerc F, Herbert E, , Hyphal network whole field imaging allows for accurate estimation of anastomosis rates and branching dynamics of the filamentous fungus Podospora anserina., Sci Rep 2020 02; 10(1): 3131.
• 2020
  Fazeli E, Roy NH, Follain G, Laine RF, von Chamier L, Hänninen PE, Eriksson JE, Tinevez JY, Jacquemet G, , Automated cell tracking using StarDist and TrackMate., F1000Res 2020 ; 9(): 1279.
• 2020
  Phan MS, Chessel A, , GeNePy3D: a quantitative geometry python toolbox for bioimaging., F1000Res 2020 ; 9(): 1374.
• 2019
  Tinevez JY, Arena ET, Anderson M, Nigro G, Injarabian L, André A, Ferrari M, Campbell-Valois FX, Devin A, Shorte SL, Sansonetti PJ, Marteyn BS, , Shigella-mediated oxygen depletion is essential for intestinal mucosa colonization., Nat Microbiol 2019 11; 4(11): 2001-2009.
• 2019
  Jean-Yves Tinevez, Sébastien Herbert, The NEMO Dots Assembly: Single-Particle Tracking and Analysis, Tinevez JY., Herbert S. (2020) The NEMO Dots Assembly: Single-Particle Tracking and Analysis. In: Miura K., Sladoje N. (eds) Bioimage Data Analysis Workflows. Learning Materials in Biosciences. Springer, Cham. https://doi.org/10.1007/978-3-030-22386-1_4.
• 2019
  Gouder L, Vitrac A, Goubran-Botros H, Danckaert A, Tinevez JY, André-Leroux G, Atanasova E, Lemière N, Biton A, Leblond CS, Poulet A, Boland A, Deleuze JF, Benchoua A, Delorme R, Bourgeron T, Cloëz-Tayarani I, , Altered spinogenesis in iPSC-derived cortical neurons from patients with autism carrying de novo SHANK3 mutations., Sci Rep 2019 01; 9(1): 94.
• 2019
  Sônego F, Bouccara S, Pons T, Lequeux N, Danckaert A, Tinevez JY, Alam IS, Shorte SL, Tournebize R, , Imaging of Red-Shifted Light From Bioluminescent Tumors Using Fluorescence by Unbound Excitation From Luminescence., Front Bioeng Biotechnol 2019 ; 7(): 73.
• 2018
  Bertiaux E, Mallet A, Fort C, Blisnick T, Bonnefoy S, Jung J, Lemos M, Marco S, Vaughan S, Trépout S, Tinevez JY, Bastin P, , Bidirectional intraflagellar transport is restricted to two sets of microtubule doublets in the trypanosome flagellum., J Cell Biol 2018 12; 217(12): 4284-4297.
• 2018
  Haupt A, Ershov D, Minc N, A Positive Feedback between Growth and Polarity Provides Directional Persistency and Flexibility to the Process of Tip Growth, Curr. Biol. 2018 Oct;28(20):3342-3351.e3.
• 2018
  Lancino M, Majello S, Herbert S, De Chaumont F, Tinevez JY, Olivo-Marin JC, Herbomel P, Schmidt A, , Anisotropic organization of circumferential actomyosin characterizes hematopoietic stem cells emergence in the zebrafish., Elife 2018 08; 7(): .
• 2018
  Aulner N, Danckaert A, Fernandes J, Nicola MA, Roux P, Salles A, Tinevez JY, Shorte SL, Fluorescence imaging host pathogen interactions: fifteen years benefit of hindsight…., Curr Opin Microbiol 2018 Jun; 43(): 193-198.
• 2018
  Dejarnac O, Hafirassou ML, Chazal M, Versapuech M, Gaillard J, Perera-Lecoin M, Umana-Diaz C, Bonnet-Madin L, Carnec X, Tinevez JY, Delaugerre C, Schwartz O, Roingeard P, Jouvenet N, Berlioz-Torrent C, Meertens L, Amara A, , TIM-1 Ubiquitination Mediates Dengue Virus Entry., Cell Rep 2018 05; 23(6): 1779-1793.
• 2018
  Anderson MC, Chaze T, Coïc YM, Injarabian L, Jonsson F, Lombion N, Selimoglu-Buet D, Souphron J, Ridley C, Vonaesch P, Baron B, Arena ET, Tinevez JY, Nigro G, Nothelfer K, Solary E, Lapierre V, Lazure T, Matondo M, Thornton D, Sansonetti PJ, Baleux F, Marteyn BS, , MUB40 Binds to Lactoferrin and Stands as a Specific Neutrophil Marker., Cell Chem Biol 2018 04; 25(4): 483-493.e9.
• 2018
  Wolff C, Tinevez JY, Pietzsch T, Stamataki E, Harich B, Guignard L, Preibisch S, Shorte S, Keller PJ, Tomancak P, Pavlopoulos A, , Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb., Elife 2018 03; 7(): .
• 2017
  Arena ET, Tinevez JY, Nigro G, Sansonetti PJ, Marteyn BS, , The infectious hypoxia: occurrence and causes during Shigella infection., Microbes Infect 2017 Mar; 19(3): 157-165.
• 2017
  Tinevez JY, Perry N, Schindelin J, Hoopes GM, Reynolds GD, Laplantine E, Bednarek SY, Shorte SL, Eliceiri KW, , TrackMate: An open and extensible platform for single-particle tracking., Methods 2017 02; 115(): 80-90.
• 2016
  Rajasekaran B, Uriu K, Valentin G, Tinevez JY, Oates AC, , Object Segmentation and Ground Truth in 3D Embryonic Imaging., PLoS One 2016 ; 11(6): e0150853.
• 2015
  Gouder L, Tinevez JY, Goubran-Botros H, Benchoua A, Bourgeron T, Cloëz-Tayarani I, , Three-dimensional Quantification of Dendritic Spines from Pyramidal Neurons Derived from Human Induced Pluripotent Stem Cells., J Vis Exp 2015 Oct; (104): .
• 2015
  Arena ET, Campbell-Valois FX, Tinevez JY, Nigro G, Sachse M, Moya-Nilges M, Nothelfer K, Marteyn B, Shorte SL, Sansonetti PJ, , Bioimage analysis of Shigella infection reveals targeting of colonic crypts., Proc Natl Acad Sci U S A 2015 Jun; 112(25): E3282-90.
• 2014
  Duval N, Daubas P, Bourcier de Carbon C, St Cloment C, Tinevez JY, Lopes M, Ribes V, Robert B, , Msx1 and Msx2 act as essential activators of Atoh1 expression in the murine spinal cord., Development 2014 Apr; 141(8): 1726-36.
• 2014
  Holland AD, Rückerl F, Dragavon JM, Rekiki A, Tinevez JY, Tournebize R, Shorte SL, , In vitro characterization of Fluorescence by Unbound Excitation from Luminescence: broadening the scope of energy transfer., Methods 2014 Mar; 66(2): 353-61.
• 2014
  Chenouard N, Smal I, de Chaumont F, Maška M, Sbalzarini IF, Gong Y, Cardinale J, Carthel C, Coraluppi S, Winter M, Cohen AR, Godinez WJ, Rohr K, Kalaidzidis Y, Liang L, Duncan J, Shen H, Xu Y, Magnusson KE, Jaldén J, Blau HM, Paul-Gilloteaux P, Roudot P, Kervrann C, Waharte F, Tinevez JY, Shorte SL, Willemse J, Celler K, van Wezel GP, Dan HW, Tsai YS, Ortiz de Solórzano C, Olivo-Marin JC, Meijering E, , Objective comparison of particle tracking methods., Nat Methods 2014 Mar; 11(3): 281-9.
• 2014
  Tarantino N, Tinevez JY, Crowell EF, Boisson B, Henriques R, Mhlanga M, Agou F, Israël A, Laplantine E, , TNF and IL-1 exhibit distinct ubiquitin requirements for inducing NEMO-IKK supramolecular structures., J Cell Biol 2014 Jan; 204(2): 231-45.
• 2014
  Caron J, Fallet C, Tinevez JY, Moisan L, Braitbart LP, Sirat GY, Shorte SL, , Conical diffraction illumination opens the way for low phototoxicity super-resolution imaging., Cell Adh Migr 2014 ; 8(5): 430-9.
• 2013
  Crowell EF, Tinevez JY, Echard A, , A simple model for the fate of the cytokinesis midbody remnant: implications for remnant degradation by autophagy., Bioessays 2013 May; 35(5): 472-81.
• 2013
  Firmino J, Tinevez JY, Knust E, , Crumbs affects protein dynamics in anterior regions of the developing Drosophila embryo., PLoS One 2013 ; 8(3): e58839.
• 2012
  Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez JY, White DJ, Hartenstein V, Eliceiri K, Tomancak P, Cardona A, , Fiji: an open-source platform for biological-image analysis., Nat Methods 2012 Jun; 9(7): 676-82.
• 2012
  Tinevez JY, Dragavon J, Baba-Aissa L, Roux P, Perret E, Canivet A, Galy V, Shorte S, , A quantitative method for measuring phototoxicity of a live cell imaging microscope., Methods Enzymol 2012 ; 506(): 291-309.
• 2011
  Colucci-Guyon E, Tinevez JY, Renshaw SA, Herbomel P, , Strategies of professional phagocytes in vivo: unlike macrophages, neutrophils engulf only surface-associated microbes., J Cell Sci 2011 Sep; 124(Pt 18): 3053-9.
• 2011
  Sedzinski J, Biro M, Oswald A, Tinevez JY, Salbreux G, Paluch E, , Polar actomyosin contractility destabilizes the position of the cytokinetic furrow., Nature 2011 Aug; 476(7361): 462-6.
• 2009
  Michalski N, Michel V, Caberlotto E, Lefèvre GM, van Aken AF, Tinevez JY, Bizard E, Houbron C, Weil D, Hardelin JP, Richardson GP, Kros CJ, Martin P, Petit C, , Harmonin-b, an actin-binding scaffold protein, is involved in the adaptation of mechanoelectrical transduction by sensory hair cells., Pflugers Arch 2009 Nov; 459(1): 115-30.
• 2009
  Tinevez JY, Schulze U, Salbreux G, Roensch J, Joanny JF, Paluch E, , Role of cortical tension in bleb growth., Proc Natl Acad Sci U S A 2009 Nov; 106(44): 18581-6.