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  • department
  • center
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  • whocc
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  • tool
  • patent
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  • Assistant Professor
  • Associate Professor
  • Clinical Research Assistant
  • Clinical Research Nurse
  • Clinician Researcher
  • Department Manager
  • Dual-education Student
  • Full Professor
  • Honorary Professor
  • Lab assistant
  • Master Student
  • Non-permanent Researcher
  • Nursing Staff
  • Permanent Researcher
  • Pharmacist
  • PhD Student
  • Physician
  • Post-doc
  • Prize
  • Project Manager
  • Research Associate
  • Research Engineer
  • Retired scientist
  • Technician
  • Undergraduate Student
  • Veterinary
  • Visiting Scientist
  • Deputy Director of Center
  • Deputy Director of Department
  • Deputy Director of National Reference Center
  • Deputy Head of Facility
  • Director of Center
  • Director of Department
  • Director of Institute
  • Director of National Reference Center
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About

I’m a research engineer working on web development, data visualization and integration, and container technologies. A recent example of my skills is ViralHostRangeDB [Lamy-Besnier et al., 2021]

I graduated as an engineer in computer science in 2009, and started my career in finance. I was consolidating and extending existing systems that simulate the evolution of the market. In a search of greater challenges, I obtained a master degree and then a thesis in computer science in 2015 . I worked on aggregating rankings of genes under a formal framework while taking into account the properties of these data and how the rankings were generated in order to determine how the rankings should be aggregated.

After my PhD I joined the French Bioinformatic Institut (IFB) working on cloud computing, federated authentication of users in various systems, and also web development of a portal allowing biologists and bioinformaticians to use cloud resources.

I joined the HUB in 2017 and now work on web development, data visualization and integration, and container technologies.

Projects

Project
Ongoing
4 Members

Viral Host Range database

Laurent Debarbieux (PI)

The Viral Host Range database (VHRdb) represents a unique resource for the community to rapidly find, document analyze and disseminate data related to the range of hosts that a virus can infect. Over the […]
Project
Ongoing
15 Members

Bioconvert

Thomas Cokelaer (PI)

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another. Life science uses many different formats. They may be old, or with complex syntax and converting […]
Project
Ongoing
15 Members

Genomic taxonomy of bacterial strains: universal nomenclatures for epidemiology and population biology

Sylvain Brisse (PI)

High-throughput sequencing has revolutionized our abilities to track and characterize novel bacterial strains as they emerge and disseminate globally. Genome-based epidemiological typing systems provide ultimate resolution for strain discrimination. Genome sequences may also be […]

Tools

Tool
Ongoing
7 Members

Chem-REST

Olivier Sperandio (PI)

This project aims at efficiently storing millions of unique molecular compounds along with some of their already calculated properties. The database named Chem-REST is able to deal with extensive sets of data: millions of […]
Tool
Completed
4 Members

EDAM Browser

Bryan Brancotte (PI)

The EDAM Browser is a client-side web-based visualization javascript widget for the navigation of the EDAM ontology. EDAM is a structured and controlled vocabulary describing bioinformatics and computational biology concepts. It is used to […]
Tool
Ongoing
12 Members

iPPI-DB Initiative

Olivier Sperandio (PI)

In order to boost the identification of low-molecular-weight drugs on protein-protein interactions (PPI), it is essential to properly collect and annotate experimental data about successful examples. This provides the scientific community with the necessary […]

Publications

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