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  • whocc
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  • Associate Professor
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  • Clinical Research Nurse
  • Clinician Researcher
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  • Full Professor
  • Honorary Professor
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  • Master Student
  • Non-permanent Researcher
  • Nursing Staff
  • Permanent Researcher
  • Pharmacist
  • PhD Student
  • Physician
  • Post-doc
  • Prize
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  • Research Engineer
  • Retired scientist
  • Technician
  • Undergraduate Student
  • Veterinary
  • Visiting Scientist
  • Deputy Director of Center
  • Deputy Director of Department
  • Deputy Director of National Reference Center
  • Deputy Head of Facility
  • Director of Center
  • Director of Department
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About

Simon Cauchemez joined Institut Pasteur in 2013 to head Mathematical Modelling of Infectious Diseases Unit. The main research objective of his unit is to develop state-of-the-art statistical and mathematical methods to address these challenges, with the aim to increase the understanding of how pathogens spread in human populations as well as the impact of interventions, to support policy making and optimize control strategies. His approach is highly multidisciplinary, looking at infectious diseases through multiple perspectives (statistics, modelling, epidemiology, surveillance, Public Health, policy making, microbiology), multiple scales and multiple data streams. Before joining Institut Pasteur, Simon Cauchemez was working in the Department of Infectious Disease Epidemiology at Imperial College London.

Courses

09:00
07
Apr 2025
Course

Modeling of infectious diseases

This one-week course offers a comprehensive introduction to the mathematical modeling of infectious diseases, tailored for students and professionals in science, medicine, and public health. For more information and program, please, visit the course […]
Mathematical Modelling Of Infectious Diseases
Simon Cauchemez
Monica Sala
Hervé Waxin
Virginie Ponticelli
2025-04-07 09:00:00 2025-04-11 18:00:00 Europe/Paris Modeling of infectious diseases This one-week course offers a comprehensive introduction to the mathematical modeling of infectious diseases, tailored for students and professionals in science, medicine, and public health. For more information and program, please, visit the course […] Institut Pasteur, Rue du Docteur Roux, Paris, France

Transversal Projects

Pasteur International Center for Research on Emerging Infectious Diseases

We established an Emerging Infectious Disease Research Center in Southeast Asia and West/Central Africa with an inter-continental one-health approach designed to improve the capacity to respond rapidly and effectively to outbreaks. We built on […]

INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations

IINCEPTION Goal The Inception aims to develop a core structure to mobilize data resources, numerical sciences, and fundamental experimental biology in various health issues (Official website here: https://www.inception-program.fr/en). The inception program uses Integrative Biology, […]

LabEx IBEID – Integrative Biology of Emerging Infectious Diseases

Presentation The aim of the Integrative Biology of Emerging Infectious Diseases (IBEID) project, coordinated by Professors Philippe Sansonetti and Pascale Cossart and currently coordinated by Carla Saleh and Philippe Bastin, is to develop a […]

Projects

Project
Ongoing
20 Members

Pasteur-Cnam-EHESP school of public health

Arnaud Fontanet (PI)

The Institut Pasteur, in collaboration with the National Conservatory of Arts and Crafts (Cnam) and the French School of Public Health (EHESP), has pooled its complementary expertise to create the Pasteur-Cnam-EHESP School of Public […]
Project
Ongoing
7 Members

Assessing the threat posed by zoonotic viruses like MERS-CoV, Nipah, Yellow Fever or plague

Simon Cauchemez (PI)

Zoonotic viruses are viruses that have an animal reservoir but may also infect humans. The 2009 A(H1N1)pdm09 influenza pandemic, the SARS epidemic in 2003, the recent emergence of a novel coronavirus in the Middle […]
Project
Ongoing
6 Members

Analysis and modelling to support decision making during epidemics

Simon Cauchemez (PI)

The Mathematical Modelling of Infectious Diseases Unit works closely with public health agencies in France and abroad to provide modelling support during epidemics so that our assessments can contribute to evidence-based decision making and […]
Project
Ongoing
10 Members

Statistical and mathematical methods to characterize disease transmission from incomplete epidemiological data

Simon Cauchemez (PI)

To design effective ways to mitigate the spread of a pathogen in a population, it is important to first have a good understanding of the transmission characteristics of the pathogen as well as the […]
Project
Ongoing
3 Members

Developing a One Health perspective: the case of Nipah virus

(PI)

  Nipah virus (NiV) is a bat-borne paramyxovirus found throughout South and South East Asia. With a case fatality ratio of >70% and no available treatment or vaccines, NiV has been identified by the […]
Project
Ongoing
3 Members

Optimizing the interpretation of serological data

Henrik Salje (PI)

When individuals get infected by a pathogens, they will develop antibodies against that pathogen that will continue to circulate in their blood. By using assays that can detect these antibodies, we can develop an […]
Project
Ongoing
3 Members

Use of sequences to identify drivers of pathogen spread

Henrik Salje (PI)

In order to understand the spread of infectious diseases, we are often interested in the transmission relationship between pairs of cases. The use of pathogen sequences has revolutionized our ability to characterize the relationship […]
Project
Ongoing
5 Members

Improved understanding of patterns of pathogen infection risk

Henrik Salje (PI)

There have been a number of recent efforts to build global maps of infection risk for different pathogens. These maps typically use the results of regressions in well-characterized settings to quantify the association between […]

Publications

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