LabEx IBEID – Integrative Biology of Emerging Infectious Diseases
Presentation Le but du projet Biologie Intégrative des Maladies Infectieuses Emergentes (IBEID), coordonné par les professeurs Philippe Sansonetti et Pascale Cossart, est de développer une structure pour anticiper et lutter contre les maladies […]
Evolutionary history of the classical biotype of Vibrio cholerae O1
The classical biotype of Vibrio cholerae O1 was responsible for the first six cholera pandemics, but is relatively unknown, with only 20 genome sequences (50% of which come from the same geographic area) for […]
Genomic insights into the 2016-2017 cholera epidemic in Yemen
Cholera is thought by many to be a disease of the Victorian era. However, Yemen has recently experienced one of the largest ever cholera epidemics. The first cases were declared in September 2016, and […]
Historical antibiotic-resistant populations of S. enterica serotype Typhimurium
Little is known about the emergence and spread of the first antibiotic-resistant populations. It is believed, for example, that the very common penicillinase gene, blaTEM-1, discovered for the first time in E. coli in Greece […]
Phylodynamics of Vibrio cholerae O1 in Africa (1970-2014)
In 1970, ten years after the beginning of the 7th pandemic (Indonesia, 1961), cholera hit Africa, where it has remained entrenched. Three decades later, the reported incidence of indigenous cholera in sub-Saharan Africa was […]
Private: Histoire évolutive du bacille de la dysenterie épidémique (Shigella dysenteriae de type 1)
L’agent de la dysenterie épidémique, la bactérie Shigella dysenteriae de type 1, a été isolé au Japon en 1897 par le Dr Kyoshi Shiga au cours d’une vaste épidémie de diarrhée sanglante ayant provoqué […]
Phylogenomics of Shiga’s epidemic dysentery bacillus (Shigella dysenteriae type 1)
The agent of epidemic dysentery, the bacterium Shigella dysenteriae type 1, was isolated in Japan in 1897 by Dr Kyoshi Shiga during a massive epidemic of bloody diarrhea that caused 20,000 deaths over a […]
The Unit includes two National Reference Centers (CNR) and a WHO Collaborating Center. Our interests are the population dynamics of bacterial enteric pathogens such Salmonella, Shigella/Escherichia coli and Vibrio, with a special focus on […]
Salmonella CRISPR Typing
CRISPR polymorphism is a powerful tool to subtype Salmonella strains and is now used in routine for epidemiological investigations. This tool gets a CRISPR profile by identifying the presence of known spacers and direct […]
2020Antimicrobial Resistance in Salmonella enterica Serovar Paratyphi B Variant Java in Poultry from Europe and Latin America., Emerging Infect. Dis. 2020 Jun; 26(6): 1164-1173.
2020Outbreak of Salmonella Newport associated with internationally distributed raw goats’ milk cheese, France, 2018., Epidemiol. Infect. 2020 May; (): 1-23.
2020The EnteroBase user’s guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity., Genome Res. 2020 01; 30(1): 138-152.
2020Source Attribution Study of Sporadic Salmonella Derby Cases in France., Front Microbiol 2020 ; 11(): 889.
2019Serotype distribution and antimicrobial resistance of human Salmonella enterica in Bangui, Central African Republic, from 2004 to 2013., PLoS Negl Trop Dis 2019 12; 13(12): e0007917.
2019Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei., Nat Commun 2019 10; 10(1): 4828.
2019Clinical Evaluation of a Multiplex PCR for the Detection of Salmonella enterica Serovars Typhi and Paratyphi A from Blood Specimens in a High-Endemic Setting., Am. J. Trop. Med. Hyg. 2019 09; 101(3): 513-520.
2019Salmonella enterica Serovar Panama, an Understudied Serovar Responsible for Extraintestinal Salmonellosis Worldwide., Infect. Immun. 2019 09; 87(9): .
2019The speciation and hybridization history of the genus Salmonella., Microb Genom 2019 08; 5(8): .
2019Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198., Microb Genom 2019 07; 5(7): .
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