• 2024
  Rafei R, Osman M, Kassem II, Dabboussi F, Weill FX, Hamze M, Spotlight on the epidemiology and antimicrobial susceptibility profiles of Vibrio species in the MENA region, 2000-2023., Future Microbiol 2024 Sep; (): 1-21.
• 2024
  Rouard C, Greig DR, Tauhid T, Dupke S, Njamkepo E, Amato E, van der Putten B, Naseer U, Blaschitz M, Mandilara GD, Cohen Stuart J, Indra A, Noël H, Sideroglou T, Heger F, van den Beld M, Wester AL, Quilici ML, Scholz HC, Fröding I, Jenkins C, Weill FX, Genomic analysis of Vibrio cholerae O1 isolates from cholera cases, Europe, 2022., Euro Surveill 2024 Sep; 29(36): .
• 2024
  Rouard C, Njamkepo E, Quilici ML, Nguyen S, Knight-Connoni V, Šafránková R, Weill FX, Vibrio cholerae serogroup O5 was responsible for the outbreak of gastroenteritis in Czechoslovakia in 1965., Microb Genom 2024 Sep; 10(9): .
• 2024
  Abou Fayad A, Rafei R, Njamkepo E, Ezzeddine J, Hussein H, Sinno S, Gerges JR, Barada S, Sleiman A, Assi M, Baakliny M, Hamedeh L, Mahfouz R, Dabboussi F, Feghali R, Mohsen Z, Rady A, Ghosn N, Abiad F, Abubakar A, Barakat A, Wauquier N, Quilici ML, Hamze M, Weill FX, Matar GM, An unusual two-strain cholera outbreak in Lebanon, 2022-2023: a genomic epidemiology study., Nat Commun 2024 Aug; 15(1): 6963.
• 2024
  Jalalizadeh F, Njamkepo E, Weill FX, Goodarzi F, Rahnamaye-Farzami M, Sabourian R, Bakhshi B, Genetic approach toward linkage of Iran 2012-2016 cholera outbreaks with 7th pandemic Vibrio cholerae., BMC Microbiol 2024 Jan; 24(1): 33.
• 2024
  De Bene AF, Russini V, Corradini C, Vita S, Pecchi S, De Marchis ML, Terracciano G, Focardi C, Montemaggiori A, Zuffi MAL, Weill FX, Bossù T, An extremely rare serovar of Salmonella enterica (Yopougon) discovered in a Western Whip Snake (Hierophis viridiflavus) from Montecristo Island, Italy: case report and review., Arch Microbiol 2024 Jan; 206(1): 49.
• 2023
  Yassine I, Rafei R, Pardos de la Gandara M, Osman M, Fabre L, Dabboussi F, Hamze M, Weill FX, Genomic analysis of Shigella isolates from Lebanon reveals marked genetic diversity and antimicrobial resistance., Microb Genom 2023 Dec; 9(12): .
• 2023
  De Silva PM, Bennett RJ, Kuhn L, Ngondo P, Debande L, Njamkepo E, Ho B, Weill FX, Marteyn BS, Jenkins C, Baker KS, Escherichia coli killing by epidemiologically successful sublineages of Shigella sonnei is mediated by colicins., EBioMedicine 2023 Nov; 97(): 104822.
• 2023
  Lassalle F, Al-Shalali S, Al-Hakimi M, Njamkepo E, Bashir IM, Dorman MJ, Rauzier J, Blackwell GA, Taylor-Brown A, Beale MA, Cazares A, Al-Somainy AA, Al-Mahbashi A, Almoayed K, Aldawla M, Al-Harazi A, Quilici ML, Weill FX, Dhabaan G, Thomson NR, Genomic epidemiology reveals multidrug resistant plasmid spread between Vibrio cholerae lineages in Yemen., Nat Microbiol 2023 Oct; 8(10): 1787-1798.
• 2023
  Jones G, Mariani-Kurkdjian P, Cointe A, Bonacorsi S, Lefèvre S, Weill FX, Le Strat Y, Sporadic Shiga Toxin-Producing Escherichia coli-Associated Pediatric Hemolytic Uremic Syndrome, France, 2012-2021., Emerg Infect Dis 2023 Oct; 29(10): 2054-2064.
• 2023
  Zhou X, Kang X, Chen J, Song Y, Jia C, Teng L, Tang Y, Jiang Z, Peng X, Tao X, Xu Y, Huang L, Xu X, Xu Y, Zhang T, Yu S, Gong J, Wang S, Liu Y, Zhu G, Kehrenberg C, Weill FX, Barrow P, Li Y, Zhao G, Yue M, Genome degradation promotes Salmonella pathoadaptation by remodeling fimbriae-mediated proinflammatory response., Natl Sci Rev 2023 Oct; 10(10): nwad228.
• 2023
  Smith AM, Sekwadi P, Erasmus LK, Lee CC, Stroika SG, Ndzabandzaba S, Alex V, Nel J, Njamkepo E, Thomas J, Weill FX, Imported Cholera Cases, South Africa, 2023., Emerg Infect Dis 2023 Aug; 29(8): 1687-1690.
• 2023
  Cuypers WL, Meysman P, Weill FX, Hendriksen RS, Beyene G, Wain J, Nair S, Chattaway MA, Perez-Sepulveda BM, Ceyssens PJ, de Block T, Lee WWY, Pardos de la Gandara M, Kornschober C, Moran-Gilad J, Veldman KT, Cormican M, Torpdahl M, Fields PI, Černý T, Hardy L, Tack B, Mellor KC, Thomson N, Dougan G, Deborggraeve S, Jacobs J, Laukens K, Van Puyvelde S, A global genomic analysis of Salmonella Concord reveals lineages with high antimicrobial resistance in Ethiopia., Nat Commun 2023 Jun; 14(1): 3517.
• 2023
  Mason LCE, Greig DR, Cowley LA, Partridge SR, Martinez E, Blackwell GA, Chong CE, Malaka De Silva P, Bengtsson RJ, Draper JL, Ginn AN, Sandaradura I, Sim EM, Iredell JR, Sintchenko V, Ingle DJ, Howden BP, Lefèvre S, Njampeko E, Weill FX ,Ceyssens PJ, Jenkins C & Baker KS, The evolution and international spread of extensively drug resistant Shigella sonnei, Nat Commun 14, 1983 (2023).
• 2023
  Yassine I, Hansen EE, Lefèvre S, Ruckly C, Carle I, Lejay-Collin M, Fabre L, Rafei R, Pardos de la Gandara M, Daboussi F, Shahin A, Weill FX, ShigaPass: an in silico tool predicting Shigella serotypes from whole-genome sequencing assemblies., Microb Genom 2023 Mar; 9(3): .
• 2023
  Lefèvre S, Njamkepo E, Feldman S, Ruckly C, Carle I, Lejay-Collin M, Fabre L, Yassine I, Frézal L, Pardos de la Gandara M, Fontanet A, Weill FX, Rapid emergence of extensively drug-resistant Shigella sonnei in France., Nat Commun 2023 Jan; 14(1): 462.
• 2023
  Pardos de la Gandara M, Fournet N, Bonifait L, Lefèvre S, Chemaly M, Grastilleur C, Cadel-Six S, Fach P, Pignault A, Brisabois A, Jourdan-Da Silva N, Weill FX, Countrywide multi-serotype outbreak of Salmonella Bovismorbificans ST142 and monophasic Salmonella Typhimurium ST34 associated with dried pork sausages in France, September 2020* to January 2021., Euro Surveill 2023 Jan; 28(2): .
• 2023
  Hounmanou YMG, Njamkepo E, Rauzier J, Gallandat K, Jeandron A, Kamwiziku G, Porten K, Luquero F, Abedi AA, Rumedeka BB, Miwanda B, Michael M, Okitayemba PW, Saidi JM, Piarroux R, Weill FX, Dalsgaard A, Quilici ML, Genomic Microevolution of Vibrio cholerae O1, Lake Tanganyika Basin, Africa., Emerg Infect Dis 2023 Jan; 29(1): 149-153.
• 2022
  Li Y, Teng L, Xu X, Li X, Peng X, Zhou X, Du J, Tang Y, Jiang Z, Wang Z, Jia C, Müller A, Kehrenberg C, Wang H, Wu B, Weill FX, Yue M, A nontyphoidal Salmonella serovar domestication accompanying enhanced niche adaptation., EMBO Mol Med 2022 Nov; 14(11): e16366.
• 2022
  Williams DJ, Grimont PAD, Cazares A, Grimont F, Ageron E, Pettigrew KA, Cazares D, Njamkepo E, Weill FX, Heinz E, Holden MTG, Thomson NR, Coulthurst SJ, The genus Serratia revisited by genomics., Nat Commun 2022 Sep; 13(1): 5195.
• 2022
  Falay D, Hardy L, Tanzito J, Lunguya O, Bonebe E, Peeters M, Mattheus W, Van Geet C, Verheyen E, Akaibe D, Katuala P, Ngbonda D, Weill FX, Pardos de la Gandara M, Jacobs J, Urban rats as carriers of invasive Salmonella Typhimurium sequence type 313, Kisangani, Democratic Republic of Congo., PLoS Negl Trop Dis 2022 Sep; 16(9): e0010740.
• 2022
  De Sousa Violante M, Podeur G, Michel V, Guillier L, Radomski N, Lailler R, Le Hello S, Weill FX, Mistou MY, Mallet L, A retrospective and regional approach assessing the genomic diversity of Salmonella Dublin., NAR Genom Bioinform 2022 Sep; 4(3): lqac047.
• 2022
  Benamrouche N, Belkader C, Njamkepo E, Zemam SS, Sadat S, Saighi K, Boutabba DT, Mechouet F, Benhadj-Slimani R, Zmit FZ, Rauzier J, Kias F, Zouagui S, Ruckly C, Yousfi M, Zertal A, Chouikrat R, Quilici ML, Weill FX, Outbreak of Imported Seventh Pandemic Vibrio cholerae O1 El Tor, Algeria, 2018., Emerg Infect Dis 2022 Jun; 28(6): 1241-1245.
• 2022
  Rouard C, Njamkepo E, Quilici ML, Weill FX, Contribution of microbial genomics to cholera epidemiology., C R Biol 2022 May; 345(1): 37-56.
• 2022
  Larkin L, Pardos de la Gandara M, Hoban A, Pulford C, Jourdan-Da Silva N, de Valk H, Browning L, Falkenhorst G, Simon S, Lachmann R, Dryselius R, Karamehmedovic N, Börjesson S, van Cauteren D, Laisnez V, Mattheus W, Pijnacker R, van den Beld M, Mossong J, Ragimbeau C, Vergison A, Thorstensen Brandal L, Lange H, Garvey P, Nielsen CS, Herrera León S, Varela C, Chattaway M, Weill FX, Brown D, McKeown P, Investigation of an international outbreak of multidrug-resistant monophasic Salmonella Typhimurium associated with chocolate products, EU/EEA and United Kingdom, February to April 2022., Euro Surveill 2022 Apr; 27(15): .
• 2022
  Cherchame E, Guillier L, Lailler R, Vignaud ML, Jourdan-Da Silva N, Le Hello S, Weill FX, Cadel-Six S, Salmonella enterica subsp. enterica Welikade: guideline for phylogenetic analysis of serovars rarely involved in foodborne outbreaks., BMC Genomics 2022 Mar; 23(1): 217.
• 2022
  Yassine I, Lefèvre S, Hansen EE, Ruckly C, Carle I, Lejay-Collin M, Fabre L, Rafei R, Clermont D, de la Gandara MP, Dabboussi F, Thomson NR, Weill FX, , Population structure analysis and laboratory monitoring of Shigella by core-genome multilocus sequence typing., Nat Commun 2022 Jan; 13(1): 551.
• 2021
  Smith AM, Weill FX, Njamkepo E, Ngomane HM, Ramalwa N, Sekwadi P, Thomas J, Emergence of Vibrio cholerae O1 Sequence Type 75, South Africa, 2018-2020., Emerg Infect Dis 2021 Nov; 27(11): 2927-2931.
• 2021
  Hawkey J, Paranagama K, Baker KS, Bengtsson RJ, Weill FX, Thomson NR, Baker S, Cerdeira L, Iqbal Z, Hunt M, Ingle DJ, Dallman TJ, Jenkins C, Williamson DA, Holt KE, Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei., Nat Commun 2021 May; 12(1): 2684.
• 2021
  Pulford CV, Perez-Sepulveda BM, Canals R, Bevington JA, Bengtsson RJ, Wenner N, Rodwell EV, Kumwenda B, Zhu X, Bennett RJ, Stenhouse GE, Malaka De Silva P, Webster HJ, Bengoechea JA, Dumigan A, Tran-Dien A, Prakash R, Banda HC, Alufandika L, Mautanga MP, Bowers-Barnard A, Beliavskaia AY, Predeus AV, Rowe WPM, Darby AC, Hall N, Weill FX, Gordon MA, Feasey NA, Baker KS, Hinton JCD, , Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa., Nat Microbiol 2021 Mar; 6(3): 327-338.
• 2021
  Breurec S, Franck T, Njamkepo E, Mbecko JR, Rauzier J, Sanke-Waïgana H, Kamwiziku G, Piarroux R, Quilici ML, Weill FX, , Seventh Pandemic Vibrio cholerae O1 Sublineages, Central African Republic., Emerg Infect Dis 2021 Jan; 27(1): 262-266.
• 2020
  Osman M, Papon N, Weill FX, , Endocannabinoids Attenuate the Virulence of Certain Enteropathogenic Bacteria., Trends Microbiol 2020 Dec; (): .
• 2020
  Oprea* M, Njamkepo* E, Cristea* D, Zhukova* A, Clark CG, Kravetz AN, Monakhova E, Ciontea AS, Cojocaru R, Rauzier J, Damian M, Gascuel O, Quilici ML, Weill FX, , The seventh pandemic of cholera in Europe revisited by microbial genomics., Nat Commun 2020 10; 11(1): 5347.
• 2020
  Mashe T, Domman D, Tarupiwa A, Manangazira P, Phiri I, Masunda K, Chonzi P, Njamkepo E, Ramudzulu M, Mtapuri-Zinyowera S, Smith AM, Weill FX, , Highly Resistant Cholera Outbreak Strain in Zimbabwe., N. Engl. J. Med. 2020 08; 383(7): 687-689.
• 2020
  Castellanos LR, van der Graaf-van Bloois L, Donado-Godoy P, Veldman K, Duarte F, Acuña MT, Jarquín C, Weill FX, Mevius DJ, Wagenaar JA, Hordijk J, Zomer AL, , Antimicrobial Resistance in Salmonella enterica Serovar Paratyphi B Variant Java in Poultry from Europe and Latin America., Emerging Infect. Dis. 2020 Jun; 26(6): 1164-1173.
• 2020
  Zhou Z, Alikhan NF, Mohamed K, Fan Y, , Achtman M, , The EnteroBase user’s guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity., Genome Res. 2020 01; 30(1): 138-152.
• 2020
  Sévellec Y, Granier SA, Le Hello S, Weill FX, Guillier L, Mistou MY, Cadel-Six S, , Source Attribution Study of Sporadic Salmonella Derby Cases in France., Front Microbiol 2020 ; 11(): 889.
• 2019
  Breurec S, Reynaud Y, Frank T, Farra A, Costilhes G, Weill FX, Le Hello S, , Serotype distribution and antimicrobial resistance of human Salmonella enterica in Bangui, Central African Republic, from 2004 to 2013., PLoS Negl Trop Dis 2019 12; 13(12): e0007917.
• 2019
  Chung The H, Boinett C, Pham Thanh D, Jenkins C, Weill FX, Howden BP, Valcanis M, De Lappe N, Cormican M, Wangchuk S, Bodhidatta L, Mason CJ, Nguyen TNT, Ha Thanh T, Voong VP, Duong VT, Nguyen PHL, Turner P, Wick R, Ceyssens PJ, Thwaites G, Holt KE, Thomson NR, Rabaa MA, Baker S, , Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei., Nat Commun 2019 10; 10(1): 4828.
• 2019
  Pouzol S, Tanmoy AM, Ahmed D, Khanam F, Brooks WA, Bhuyan GS, Fabre L, Bryant JE, Gustin MP, Vanhems P, Carman B, Weill FX, Qadri F, Saha S, Endtz H, , Clinical Evaluation of a Multiplex PCR for the Detection of Salmonella enterica Serovars Typhi and Paratyphi A from Blood Specimens in a High-Endemic Setting., Am. J. Trop. Med. Hyg. 2019 09; 101(3): 513-520.
• 2019
  Pulford CV, Perez-Sepulveda BM, Rodwell EV, Weill FX, Baker KS, Hinton JCD, , Salmonella enterica Serovar Panama, an Understudied Serovar Responsible for Extraintestinal Salmonellosis Worldwide., Infect. Immun. 2019 09; 87(9): .
• 2019
  Criscuolo A, Issenhuth-Jeanjean S, Didelot X, Thorell K, Hale J, Parkhill J, Thomson NR, Weill FX, Falush D, Brisse S, , The speciation and hybridization history of the genus Salmonella., Microb Genom 2019 08; 5(8): .
• 2019
  Hawkey J, Le Hello S, Doublet B, Granier SA, Hendriksen RS, Fricke WF, Ceyssens PJ, Gomart C, Billman-Jacobe H, Holt KE, Weill FX, , Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198., Microb Genom 2019 07; 5(7): .
• 2019
  Jones G, Lefèvre S, Donguy MP, Nisavanh A, Terpant G, Fougère E, Vaissière E, Guinard A, Mailles A, de Valk H, Fila M, Tanné C, Le Borgne C, Weill FX, Bonacorsi S, Jourdan-Da Silva N, Mariani-Kurkdjian P, , Outbreak of Shiga toxin-producing Escherichia coli (STEC) O26 paediatric haemolytic uraemic syndrome (HUS) cases associated with the consumption of soft raw cow’s milk cheeses, France, March to May 2019., Euro Surveill. 2019 May; 24(22): .
• 2019
  Frémeaux-Bacchi V, Sellier-Leclerc AL, Vieira-Martins P, Limou S, Kwon T, Lahoche A, Novo R, Llanas B, Nobili F, Roussey G, Cailliez M, Ulinski T, Deschênes G, Alberti C, Weill FX, Mariani P, Loirat C, , Complement Gene Variants and Shiga Toxin-Producing Escherichia coli-Associated Hemolytic Uremic Syndrome: Retrospective Genetic and Clinical Study., Clin J Am Soc Nephrol 2019 03; 14(3): 364-377.
• 2019
  Jones G, Pardos de la Gandara M, Herrera-Leon L, Herrera-Leon S, Varela Martinez C, Hureaux-Roy R, Abdallah Y, Nisavanh A, Fabre L, Renaudat C, Mossong J, Mattheus W, Huard C, Le Borgne C, de Valk H, Weill FX, Jourdan-Da Silva N, , Outbreak of Salmonella enterica serotype Poona in infants linked to persistent Salmonella contamination in an infant formula manufacturing facility, France, August 2018 to February 2019., Euro Surveill. 2019 Mar; 24(13): .
• 2019
  Bruyand M, Mariani-Kurkdjian P, Le Hello S, King LA, Van Cauteren D, Lefevre S, Gouali M, Jourdan-da Silva N, Mailles A, Donguy MP, Loukiadis E, Sergentet-Thevenot D, Loirat C, Bonacorsi S, Weill FX, De Valk H, , , Paediatric haemolytic uraemic syndrome related to Shiga toxin-producing Escherichia coli, an overview of 10 years of surveillance in France, 2007 to 2016., Euro Surveill. 2019 Feb; 24(8): .
• 2019
  Weill FX, Domman D, Njamkepo E, Almesbahi AA, Naji M, Nasher SS, Rakesh A, Assiri AM, Sharma NC, Kariuki S, Pourshafie MR, Rauzier J, Abubakar A, Carter JY, Wamala JF, Seguin C, Bouchier C, Malliavin T, Bakhshi B, Abulmaali HHN, Kumar D, Njoroge SM, Malik MR, Kiiru J, Luquero FJ, Azman AS, Ramamurthy T, Thomson NR, Quilici ML, , Genomic insights into the 2016-2017 cholera epidemic in Yemen., Nature 2019 01; 565(7738): 230-233.
• 2019
  Guyomard-Rabenirina S, Weill FX, Le Hello S, Bastian S, Berger F, Ferdinand S, Legreneur P, Loraux C, Malpote E, Muanza B, Richard V, Talarmin A, Breurec S, , Reptiles in Guadeloupe (French West Indies) are a reservoir of major human Salmonella enterica serovars., PLoS ONE 2019 ; 14(7): e0220145.
• 2019
  Radomski N, Cadel-Six S, Cherchame E, Felten A, Barbet P, Palma F, Mallet L, Le Hello S, Weill FX, Guillier L, Mistou MY, , A Simple and Robust Statistical Method to Define Genetic Relatedness of Samples Related to Outbreaks at the Genomic Scale – Application to Retrospective Salmonella Foodborne Outbreak Investigations., Front Microbiol 2019 ; 10(): 2413.
• 2019
  Ramamurthy T, Mutreja A, Weill FX, Das B, Ghosh A, Nair GB, , Revisiting the Global Epidemiology of Cholera in Conjuction With the Genomics of Vibrio cholerae., Front Public Health 2019 ; 7(): 203.
• 2018
  Baker S, Thomson N, Weill FX, Holt KE, Genomic insights into the emergence and spread of antimicrobial-resistant bacterial pathogens, Science 2018 05;360(6390):733-738.
• 2018
  Baker KS, Dallman TJ, Field N, Childs T, Mitchell H, Day M, Weill FX, Lefèvre S, Tourdjman M, Hughes G, Jenkins C, Thomson N, Horizontal antimicrobial resistance transfer drives epidemics of multiple Shigella species, Nat Commun 2018 Apr;9(1):1462.
• 2017
  Tran-Dien A, Le Hello S, Bouchier C, Weill FX, Early transmissible ampicillin resistance in zoonotic Salmonella enterica serotype Typhimurium in the late 1950s: a retrospective, whole-genome sequencing study, Lancet Infect Dis 2018 Feb;18(2):207-214.
• 2017
  Domman D, Quilici ML, Dorman MJ, Njamkepo E, Mutreja A, Mather AE, Delgado G, Morales-Espinosa R, Grimont PAD, Lizárraga-Partida ML, Bouchier C, Aanensen DM, Kuri-Morales P, Tarr CL, Dougan G, Parkhill J, Campos J, Cravioto A, Weill FX, Thomson NR, Integrated view of Vibrio cholerae in the Americas, Science 2017 11;358(6364):789-793.
• 2017
  Weill FX, Domman D, Njamkepo E, Tarr C, Rauzier J, Fawal N, Keddy KH, Salje H, Moore S, Mukhopadhyay AK, Bercion R, Luquero FJ, Ngandjio A, Dosso M, Monakhova E, Garin B, Bouchier C, Pazzani C, Mutreja A, Grunow R, Sidikou F, Bonte L, Breurec S, Damian M, Njanpop-Lafourcade BM, Sapriel G, Page AL, Hamze M, Henkens M, Chowdhury G, Mengel M, Koeck JL, Fournier JM, Dougan G, Grimont PAD, Parkhill J, Holt KE, Piarroux R, Ramamurthy T, Quilici ML, Thomson NR, Genomic history of the seventh pandemic of cholera in Africa, Science 2017 11;358(6364):785-789.
• 2017
  Kuijpers LMF, Phe T, Veng CH, Lim K, Ieng S, Kham C, Fawal N, Fabre L, Le Hello S, Vlieghe E, Weill FX, Jacobs J, Peetermans WE, The clinical and microbiological characteristics of enteric fever in Cambodia, 2008-2015, PLoS Negl Trop Dis 2017 Sep;11(9):e0005964.
• 2016
  Duchêne S, Holt KE, Weill FX, Le Hello S, Hawkey J, Edwards DJ, Fourment M, Holmes EC, Genome-scale rates of evolutionary change in bacteria, Microb Genom 2016 Nov;2(11):e000094.
• 2016
  Kuijpers LM, Le Hello S, Fawal N, Fabre L, Tourdjman M, Dufour M, Sar D, Kham C, Phe T, Vlieghe E, Bouchier C, Jacobs J, Weill FX, Genomic analysis of Salmonella enterica serotype Paratyphi A during an outbreak in Cambodia, 2013-2015, Microb Genom 2016 Nov;2(11):e000092.
• 2016
  Wong VK, Baker S, Connor TR, Pickard D, Page AJ, Dave J, Murphy N, Holliman R, Sefton A, Millar M, Dyson ZA, Dougan G, Holt KE,, An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid, Nat Commun 2016 Oct;7:12827.
• 2016
  Njamkepo E, Fawal N, Tran-Dien A, Hawkey J, Strockbine N, Jenkins C, Talukder KA, Bercion R, Kuleshov K, Kolínská R, Russell JE, Kaftyreva L, Accou-Demartin M, Karas A, Vandenberg O, Mather AE, Mason CJ, Page AJ, Ramamurthy T, Bizet C, Gamian A, Carle I, Sow AG, Bouchier C, Wester AL, Lejay-Collin M, Fonkoua MC, Le Hello S, Blaser MJ, Jernberg C, Ruckly C, Mérens A, Page AL, Aslett M, Roggentin P, Fruth A, Denamur E, Venkatesan M, Bercovier H, Bodhidatta L, Chiou CS, Clermont D, Colonna B, Egorova S, Pazhani GP, Ezernitchi AV, Guigon G, Harris SR, Izumiya H, Korzeniowska-Kowal A, Lutyńska A, Gouali M, Grimont F, Langendorf C, Marejková M, Peterson LA, Perez-Perez G, Ngandjio A, Podkolzin A, Souche E, Makarova M, Shipulin GA, Ye C, Žemličková H, Herpay M, Grimont PA, Parkhill J, Sansonetti P, Holt KE, Brisse S, Thomson NR, Weill FX, Erratum: Global phylogeography and evolutionary history of Shigella dysenteriae type 1, Nat Microbiol 2016 10;1(11):16209.
• 2016
  Wong VK, Holt KE, Okoro C, Baker S, Pickard DJ, Marks F, Page AJ, Olanipekun G, Munir H, Alter R, Fey PD, Feasey NA, Weill FX, Le Hello S, Hart PJ, Kariuki S, Breiman RF, Gordon MA, Heyderman RS, Jacobs J, Lunguya O, Msefula C, MacLennan CA, Keddy KH, Smith AM, Onsare RS, De Pinna E, Nair S, Amos B, Dougan G, Obaro S, Molecular Surveillance Identifies Multiple Transmissions of Typhoid in West Africa, PLoS Negl Trop Dis 2016 Sep;10(9):e0004781.
• 2016
  Baker KS, Dallman TJ, Behar A, Weill FX, Gouali M, Sobel J, Fookes M, Valinsky L, Gal-Mor O, Connor TR, Nissan I, Bertrand S, Parkhill J, Jenkins C, Cohen D, Thomson NR, Travel- and Community-Based Transmission of Multidrug-Resistant Shigella sonnei Lineage among International Orthodox Jewish Communities, Emerging Infect. Dis. 2016 Sep;22(9):1545-53.
• 2016
  Connor TR, Owen SV, Langridge G, Connell S, Nair S, Reuter S, Dallman TJ, Corander J, Tabing KC, Le Hello S, Fookes M, Doublet B, Zhou Z, Feltwell T, Ellington MJ, Herrera S, Gilmour M, Cloeckaert A, Achtman M, Parkhill J, Wain J, De Pinna E, Weill FX, Peters T, Thomson N, What’s in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B, MBio 2016;7(4).
• 2016
  Feasey NA, Hadfield J, Keddy KH, Dallman TJ, Jacobs J, Deng X, Wigley P, Barquist Barquist L, Langridge GC, Feltwell T, Harris SR, Mather AE, Fookes M, Aslett M, Msefula C, Kariuki S, Maclennan CA, Onsare RS, Weill FX, Le Hello S, Smith AM, McClelland M, Desai P, Parry CM, Cheesbrough J, French N, Campos J, Chabalgoity JA, Betancor L, Hopkins KL, Nair S, Humphrey TJ, Lunguya O, Cogan TA, Tapia MD, Sow SO, Tennant SM, Bornstein K, Levine MM, Lacharme-Lora L, Everett DB, Kingsley RA, Parkhill J, Heyderman RS, Dougan G, Gordon MA, Thomson NR, Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings, Nat. Genet. 2016 Aug;.
• 2016
  Bale J, Meunier D, Weill FX, dePinna E, Peters T, Nair S, Characterisation of new Salmonella serovars by whole genome sequencing and traditional typing techniques, J. Med. Microbiol. 2016 Aug;.
• 2016
  Céline M. Gossner, Simon Le Hello, Birgitta de Jong, Per Rolfhamre, Daniel Faensen, François-Xavier Weill, Johan Giesecke, Around the World in 1,475 Salmonella Geo-serotypes, Emerg Infect Dis, 2016 Jul; 22(7):1298-1302.
• 2016
  Njamkepo E, Fawal N, Tran-Dien A, Hawkey J, Strockbine N, Jenkins C, Talukder KA, Bercion R, Kuleshov K, Kolínská R, Russell JE, Kaftyreva L, Accou-Demartin M, Karas A, Vandenberg O, Mather AE, Mason CJ, Page AJ, Ramamurthy T, Bizet C, Gamian A, Carle I, Sow AG, Bouchier C, Wester AL, Lejay-Collin M, Fonkoua MC, Le Hello S, Blaser MJ, Jernberg C, Ruckly C, Mérens A, Page AL, Aslett M, Roggentin P, Fruth A, Denamur E, Venkatesan M, Bercovier H, Bodhidatta L, Chiou CS, Clermont D, Colonna B, Egorova S, Pazhani GP, Ezernitchi AV, Guigon G, Harris SR, Izumiya H, Korzeniowska-Kowal A, Lutyńska A, Gouali M, Grimont F, Langendorf C, Marejková M, Peterson LA, Perez-Perez G, Ngandjio A, Podkolzin A, Souche E, Makarova M, Shipulin GA, Ye C, Žemličková H, Herpay M, Grimont PA, Parkhill J, Sansonetti P, Holt KE, Brisse S, Thomson NR, Weill FX, , Global phylogeography and evolutionary history of Shigella dysenteriae type 1., Nat Microbiol 2016 03; 1(): 16027.
• 2016
  Leekitcharoenphon P, Hendriksen RS, Le Hello S, Weill FX, Baggesen DL, Jun SR, Ussery DW, Lund O, Crook DW, Wilson DJ, Aarestrup FM, Global genomic epidemiology of Salmonella Typhimurium DT104, Appl. Environ. Microbiol. 2016 Mar;.
• 2016
  Makendi C, Page AJ, Wren BW, Le Thi Phuong T, Clare S, Hale C, Goulding D, Klemm EJ, Pickard D, Okoro C, Hunt M, Thompson CN, Phu Huong Lan N, Tran Do Hoang N, Thwaites GE, Le Hello S, Brisabois A, Weill FX, Baker S, Dougan G, A Phylogenetic and Phenotypic Analysis of Salmonella enterica Serovar Weltevreden, an Emerging Agent of Diarrheal Disease in Tropical Regions, PLoS Negl Trop Dis 2016 Feb;10(2):e0004446.
• 2016
  Commereuc M, Weill FX, Loukiadis E, Gouali M, Gleizal A, Kormann R, Ridel C, Frémeaux-Bacchi V, Rondeau E, Hertig A, Recurrent Hemolytic and Uremic Syndrome Induced by Escherichia Coli, Medicine (Baltimore) 2016 Jan;95(1):e2050.
• 2015
  Yue M, Han X, De Masi L, Zhu C, Ma X, Zhang J, Wu R, Schmieder R, Kaushik RS, Fraser GP, Zhao S, McDermott PF, Weill FX, Mainil JG, Arze C, Fricke WF, Edwards RA, Brisson D, Zhang NR, Rankin SC, Schifferli DM, Allelic variation contributes to bacterial host specificity, Nat Commun 2015;6:8754.
• 2015
  Zhu C, Yue M, Rankin S, Weill FX, Frey J, Schifferli DM, One-step identification of five prominent chicken Salmonella serovars and biotypes, J. Clin. Microbiol. 2015 Sep;.
• 2015
  Ktari S, Le Hello S, Ksibi B, Courdavault L, Mnif B, Maalej S, Fabre L, Hammami A, Weill FX, Carbapenemase-producing Salmonella enterica serotype Kentucky ST198, North Africa, J. Antimicrob. Chemother. 2015 Sep;.
• 2015
  Connor TR, Barker CR, Baker KS, Weill FX, Talukder KA, Smith AM, Baker S, Gouali M, Pham Thanh D, Jahan Azmi I, Dias da Silveira W, Semmler T, Wieler LH, Jenkins C, Cravioto A, Faruque SM, Parkhill J, Wook Kim D, Keddy KH, Thomson NR, Species-wide whole genome sequencing reveals historical global spread and recent local persistence in Shigella flexneri, Elife 2015;4:e07335.
• 2015
  Rossi O, Baker KS, Phalipon A, Weill FX, Citiulo F, Sansonetti P, Gerke C, Thomson NR, Draft genomes of Shigella strains used by the STOPENTERICS consortium, Gut Pathog 2015;7:14.
• 2015
  Wong VK, Baker S, Pickard DJ, Parkhill J, Page AJ, Feasey NA, Kingsley RA, Thomson NR, Keane JA, Weill FX, Edwards DJ, Hawkey J, Harris SR, Mather AE, Cain AK, Hadfield J, Hart PJ, Thieu NT, Klemm EJ, Glinos DA, Breiman RF, Watson CH, Kariuki S, Gordon MA, Heyderman RS, Okoro C, Jacobs J, Lunguya O, Edmunds WJ, Msefula C, Chabalgoity JA, Kama M, Jenkins K, Dutta S, Marks F, Campos J, Thompson C, Obaro S, MacLennan CA, Dolecek C, Keddy KH, Smith AM, Parry CM, Karkey A, Mulholland EK, Campbell JI, Dongol S, Basnyat B, Dufour M, Bandaranayake D, Naseri TT, Singh SP, Hatta M, Newton P, Onsare RS, Isaia L, Dance D, Davong V, Thwaites G, Wijedoru L, Crump JA, De Pinna E, Nair S, Nilles EJ, Thanh DP, Turner P, Soeng S, Valcanis M, Powling J, Dimovski K, Hogg G, Farrar J, Holt KE, Dougan G, Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events, Nat. Genet. 2015 Jun;47(6):632-9.
• 2015
  Mazi W, Sangal V, Saeed A, Sandstrom G, Weill FX, Yu J, Rapid Genotyping of Shigella sonnei by Use of Multiplex High-Resolution Melting, J. Clin. Microbiol. 2015 Jul;53(7):2389-91.
• 2015
  Baker KS, Dallman TJ, Ashton PM, Day M, Hughes G, Crook PD, Gilbart VL, Zittermann S, Allen VG, Howden BP, Tomita T, Valcanis M, Harris SR, Connor TR, Sintchenko V, Howard P, Brown JD, Petty NK, Gouali M, Thanh DP, Keddy KH, Smith AM, Talukder KA, Faruque SM, Parkhill J, Baker S, Weill FX, Jenkins C, Thomson NR, Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study, Lancet Infect Dis 2015 Aug;15(8):913-21.
• 2015
  Langendorf C, Le Hello S, Moumouni A, Gouali M, Mamaty AA, Grais RF, Weill FX, Page AL, Enteric bacterial pathogens in children with diarrhea in Niger: diversity and antimicrobial resistance, PLoS ONE 2015;10(3):e0120275.
• 2014
  Zhou Z, McCann A, Weill FX, Blin C, Nair S, Wain J, Dougan G, Achtman M, Transient Darwinian selection in Salmonella enterica serovar Paratyphi A during 450 years of global spread of enteric fever, Proc. Natl. Acad. Sci. U.S.A. 2014 Aug;111(33):12199-204.
• 2014
  Issenhuth-Jeanjean S, Roggentin P, Mikoleit M, Guibourdenche M, de Pinna E, Nair S, Fields PI, Weill FX, Supplement 2008-2010 (no. 48) to the White-Kauffmann-Le Minor scheme, Res. Microbiol. 2014 Sep;165(7):526-30.
• 2014
  Gay N, Le Hello S, Weill FX, de Thoisy B, Berger F, Salmonella serotypes in reptiles and humans, French Guiana, Vet. Microbiol. 2014 May;170(1-2):167-71.
• 2014
  Fabre L, Le Hello S, Roux C, Issenhuth-Jeanjean S, Weill FX, CRISPR is an optimal target for the design of specific PCR assays for salmonella enterica serotypes Typhi and Paratyphi A, PLoS Negl Trop Dis 2014;8(1):e2671.
• 2014
  Baucheron S, Monchaux I, Le Hello S, Weill FX, Cloeckaert A, Lack of efflux mediated quinolone resistance in Salmonella enterica serovars Typhi and Paratyphi A, Front Microbiol 2014;5:12.
• 2013
  Le Hello S, Bekhit A, Granier SA, Barua H, Beutlich J, Zając M, Münch S, Sintchenko V, Bouchrif B, Fashae K, Pinsard JL, Sontag L, Fabre L, Garnier M, Guibert V, Howard P, Hendriksen RS, Christensen JP, Biswas PK, Cloeckaert A, Rabsch W, Wasyl D, Doublet B, Weill FX, The global establishment of a highly-fluoroquinolone resistant Salmonella enterica serotype Kentucky ST198 strain, Front Microbiol 2013;4:395.
• 2013
  Compain F, Poisson A, Le Hello S, Branger C, Weill FX, Arlet G, Decré D, Targeting relaxase genes for classification of the predominant plasmids in Enterobacteriaceae, Int. J. Med. Microbiol. 2014 May;304(3-4):236-42.
• 2013
  Le Hello S, Harrois D, Bouchrif B, Sontag L, Elhani D, Guibert V, Zerouali K, Weill FX, Highly drug-resistant Salmonella enterica serotype Kentucky ST198-X1: a microbiological study, Lancet Infect Dis 2013 Aug;13(8):672-9.
• 2013
  Gouali M, Ruckly C, Carle I, Lejay-Collin M, Weill FX, Evaluation of CHROMagar STEC and STEC O104 chromogenic agar media for detection of Shiga Toxin-producing Escherichia coli in stool specimens, J. Clin. Microbiol. 2013 Mar;51(3):894-900.
• 2012
  Gouali M, Weill FX, [Enterohemorragic Escherichia coli (EHEC): topical enterobacteriaceae], Presse Med 2013 Jan;42(1):68-75.
• 2012
  Le Hello S, Weill FX, Guibert V, Praud K, Cloeckaert A, Doublet B, Early strains of multidrug-resistant Salmonella enterica serovar Kentucky sequence type 198 from Southeast Asia harbor Salmonella genomic island 1-J variants with a novel insertion sequence, Antimicrob. Agents Chemother. 2012 Oct;56(10):5096-102.
• 2012
  Fabre L, Zhang J, Guigon G, Le Hello S, Guibert V, Accou-Demartin M, de Romans S, Lim C, Roux C, Passet V, Diancourt L, Guibourdenche M, Issenhuth-Jeanjean S, Achtman M, Brisse S, Sola C, Weill FX, CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections, PLoS ONE 2012;7(5):e36995.
• 2012
  Le Hello S, Brisabois A, Accou-Demartin M, Josse A, Marault M, Francart S, Da Silva NJ, Weill FX, Foodborne outbreak and nonmotile Salmonella enterica variant, France, Emerging Infect. Dis. 2012 Jan;18(1):132-4.
• 2011
  Le Hello S, Hendriksen RS, Doublet B, Fisher I, Nielsen EM, Whichard JM, Bouchrif B, Fashae K, Granier SA, Jourdan-Da Silva N, Cloeckaert A, Threlfall EJ, Angulo FJ, Aarestrup FM, Wain J, Weill FX, International spread of an epidemic population of Salmonella enterica serotype Kentucky ST198 resistant to ciprofloxacin, J. Infect. Dis. 2011 Sep;204(5):675-84.
• 2011
  Accou-Demartin M, Gaborieau V, Song Y, Roumagnac P, Marchou B, Achtman M, Weill FX, Salmonella enterica Serotype Typhi with nonclassical quinolone resistance phenotype, Emerging Infect. Dis. 2011 Jun;17(6):1091-4.
• 2011
  Pardos de la Gándara M, Seral C, Castillo García J, Rubio Calvo C, Weill FX, Prevalence and characterization of extended-spectrum beta-lactamases-producing Salmonella enterica isolates in Saragossa, Spain (2001-2008), Microb. Drug Resist. 2011 Jun;17(2):207-13.
• 2010
  Weill FX, [Typhoid fever: facing the challenge of resistant strains], Med Sci (Paris) 2010 Nov;26(11):969-75.
• 2009
  Doublet B, Robin F, Casin I, Fabre L, Le Fleche A, Bonnet R, Weill FX, Molecular and biochemical characterization of the natural chromosome-encoded class A beta-lactamase from Pseudomonas luteola, Antimicrob. Agents Chemother. 2010 Jan;54(1):45-51.
• 2009
  Weill FX, Le Hello S, Clerc M, Scribans C, de Barbeyrac B, Serological reactivity and bacterial genotypes in Chlamydia trachomatis urogenital infections in Guadeloupe, French West Indies, Sex Transm Infect 2010 Apr;86(2):101-5.
• 2009
  Guibourdenche M, Roggentin P, Mikoleit M, Fields PI, Bockemühl J, Grimont PA, Weill FX, Supplement 2003-2007 (No. 47) to the White-Kauffmann-Le Minor scheme, Res. Microbiol. 2010 Jan-Feb;161(1):26-9.
• 2009
  Bouchrif B, Le Hello S, Pardos M, Karraouan B, Perrier-Gros-Claude JD, Ennaji MM, Timinouni M, Weill FX, Ceftazidime-resistant Salmonella enterica, Morocco, Emerging Infect. Dis. 2009 Oct;15(10):1693-5.
• 2009
  Fabre L, Delauné A, Espié E, Nygard K, Pardos de la Gandara M, Polomack L, Guesnier F, Galimand M, Lassen J, Weill FX, Chromosomal integration of the extended-spectrum beta-lactamase gene blaCTX-M-15 in Salmonella enterica serotype Concord isolates from internationally adopted children, Antimicrob. Agents Chemother. 2009 05;53(5):1808-16.
• 2009
  Doublet B, Granier SA, Robin F, Bonnet R, Fabre L, Brisabois A, Cloeckaert A, Weill FX, Novel plasmid-encoded ceftazidime-hydrolyzing CTX-M-53 extended-spectrum beta-lactamase from Salmonella enterica serotypes Westhampton and Senftenberg, Antimicrob. Agents Chemother. 2009 May;53(5):1944-51.
• 2008
  Doublet B, Praud K, Weill FX, Cloeckaert A, Association of IS26-composite transposons and complex In4-type integrons generates novel multidrug resistance loci in Salmonella genomic island 1, J. Antimicrob. Chemother. 2009 Feb;63(2):282-9.
• 2008
  Doublet B, Praud K, Bertrand S, Collard JM, Weill FX, Cloeckaert A, Novel insertion sequence- and transposon-mediated genetic rearrangements in genomic island SGI1 of Salmonella enterica serovar Kentucky., Antimicrob Agents Chemother 2008 Oct; 52(10): 3745-54.
• 2008
  Egorova S, Timinouni M, Demartin M, Granier SA, Whichard JM, Sangal V, Fabre L, Delauné A, Pardos M, Millemann Y, Espié E, Achtman M, Grimont PA, Weill FX, , Ceftriaxone-resistant salmonella enterica serotype Newport, France., Emerging Infect. Dis. 2008 Jun; 14(6): 954-7.
• 2007
  Le TA, Fabre L, Roumagnac P, Grimont PA, Scavizzi MR, Weill FX, Clonal expansion and microevolution of quinolone-resistant Salmonella enterica serotype typhi in Vietnam from 1996 to 2004, J. Clin. Microbiol. 2007 Nov;45(11):3485-92.
• 2007
  Weill FX, Tran HH, Roumagnac P, Fabre L, Minh NB, Stavnes TL, Lassen J, Bjune G, Grimont PA, Guerin PJ, Clonal reconquest of antibiotic-susceptible Salmonella enterica serotype Typhi in Son La Province, Vietnam, Am. J. Trop. Med. Hyg. 2007 Jun;76(6):1174-81.
• 2007
  Cattoir V, Weill FX, Poirel L, Fabre L, Soussy CJ, Nordmann P, Prevalence of qnr genes in Salmonella in France, J. Antimicrob. Chemother. 2007 Apr;59(4):751-4.
• 2006
  Bercion R, Demartin M, Recio C, Massamba PM, Frank T, Escribà JM, Grimont F, Grimont PA, Weill FX, Molecular epidemiology of multidrug-resistant Shigella dysenteriae type 1 causing dysentery outbreaks in Central African Republic, 2003-2004, Trans. R. Soc. Trop. Med. Hyg. 2006 Dec;100(12):1151-8.
• 2006
  Weill FX, Guesnier F, Guibert V, Timinouni M, Demartin M, Polomack L, Grimont PA, Multidrug resistance in Salmonella enterica serotype Typhimurium from humans in France (1993 to 2003), J. Clin. Microbiol. 2006 Mar;44(3):700-8.
• 2005
  Fevre C, Passet V, Weill FX, Grimont PA, Brisse S, Variants of the Klebsiella pneumoniae OKP chromosomal beta-lactamase are divided into two main groups, OKP-A and OKP-B, Antimicrob. Agents Chemother. 2005 Dec;49(12):5149-52.
• 2005
  Fevre C, Jbel M, Passet V, Weill FX, Grimont PA, Brisse S, Six groups of the OXY beta-Lactamase evolved over millions of years in Klebsiella oxytoca, Antimicrob. Agents Chemother. 2005 Aug;49(8):3453-62.
• 2005
  Weill FX, Fabre L, Grandry B, Grimont PA, Casin I, Multiple-antibiotic resistance in Salmonella enterica serotype Paratyphi B isolates collected in France between 2000 and 2003 is due mainly to strains harboring Salmonella genomic islands 1, 1-B, and 1-C, Antimicrob. Agents Chemother. 2005 Jul;49(7):2793-801.
• 2005
  Bouallègue-Godet O, Ben Salem Y, Fabre L, Demartin M, Grimont PA, Mzoughi R, Weill FX, Nosocomial outbreak caused by Salmonella enterica serotype Livingstone producing CTX-M-27 extended-spectrum beta-lactamase in a neonatal unit in Sousse, Tunisia, J. Clin. Microbiol. 2005 Mar;43(3):1037-44.
• 2004
  Weill FX, Lailler R, Praud K, Kérouanton A, Fabre L, Brisabois A, Grimont PA, Cloeckaert A, Emergence of extended-spectrum-beta-lactamase (CTX-M-9)-producing multiresistant strains of Salmonella enterica serotype Virchow in poultry and humans in France, J. Clin. Microbiol. 2004 Dec;42(12):5767-73.
• 2004
  Weill FX, Perrier-Gros-Claude JD, Demartin M, Coignard S, Grimont PA, Characterization of extended-spectrum-beta-lactamase (CTX-M-15)-producing strains of Salmonella enterica isolated in France and Senegal, FEMS Microbiol. Lett. 2004 Sep;238(2):353-8.
• 2004
  Weill FX, Demartin M, Fabre L, Grimont PA, Extended-spectrum-beta-lactamase (TEM-52)-producing strains of Salmonella enterica of various serotypes isolated in France, J. Clin. Microbiol. 2004 Jul;42(7):3359-62.
• 2004
  Weill FX, Demartin M, Tandé D, Espié E, Rakotoarivony I, Grimont PA, SHV-12-like extended-spectrum-beta-lactamase-producing strains of Salmonella enterica serotypes Babelsberg and Enteritidis isolated in France among infants adopted from Mali, J. Clin. Microbiol. 2004 Jun;42(6):2432-7.