Tools & Software
![](https://research.pasteur.fr/wp-content/uploads/2022/12/research_pasteur-pawel-czerwinski-f-rcfqp7ze4-unsplash-150x150.jpg)
Software
Compareads
Nicolas Maillet
![](https://research.pasteur.fr/wp-content/uploads/2019/01/research_pasteur-unite_fx-weill_institutpasteur_13946-150x150.jpg)
Tool
Salmonella CRISPR Typing
Francois-Xavier Weill
![](https://research.pasteur.fr/wp-content/uploads/2018/03/research_pasteur-logo50x50-color-nofont-300p-1-150x150.png)
Software
TrackMate
Jean-Yves Tinevez • Spencer Shorte
![](https://research.pasteur.fr/wp-content/uploads/2017/10/research_pasteur-the_imp-150x150.png)
Software
Integrative Modelling Platform
Riccardo Pellarin
![](https://research.pasteur.fr/wp-content/uploads/2022/12/research_pasteur-billy-huynh-w8kts-mhfue-unsplash-150x150.jpg)
Software
Spectral Analysis in Python
Thomas Cokelaer
![](https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_complex-system-150x150.jpg)
Software
Counter RNAseq Window (CRAW)
Bertrand Néron
![](https://research.pasteur.fr/wp-content/uploads/2017/07/research_pasteur-listeriomics-1-150x150.png)
Software
Listeriomics: an Interactive Web Platform for Systems Biology of Listeria
Christophe Becavin
![](https://research.pasteur.fr/wp-content/uploads/2017/06/research_pasteur-tooldog_logo_2-150x150.png)
Software
ToolDog – Tool Description Generator
Hervé Menager
![](https://research.pasteur.fr/wp-content/uploads/2017/02/research.pasteur.fr_phageterm_logo-1-150x150.png)
Software
PhageTerm
Marc Monot
![](https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_genomics-150x150.jpg)
Tool
CapsuleFinder
Eduardo Rocha
![](https://research.pasteur.fr/wp-content/uploads/2017/01/research.pasteur.fr_dna-1-150x150.png)
Tool
checkMyIndex
Hugo Varet
![](https://research.pasteur.fr/wp-content/uploads/2018/08/research_pasteur-dag-2-150x150.png)
Software
Sequana: a set of flexible NGS pipelines
Thomas Cokelaer
![](https://research.pasteur.fr/wp-content/uploads/2018/02/research_pasteur-gravity_3_small-3-150x150.png)
Software
GRAVITY
Thomas Bourgeron
![](https://research.pasteur.fr/wp-content/uploads/2016/11/research.pasteur.fr_stratipy-1-150x150.png)
Software
StratiPy
Thomas Bourgeron
![](https://research.pasteur.fr/wp-content/uploads/2016/11/research.pasteur.fr_brainbox-150x150.png)
Software
BrainBox
Roberto Toro
![](https://research.pasteur.fr/wp-content/uploads/2016/10/research_pasteur-ippi-db-initiative-image-150x150.png)
Tool
iPPI-DB Initiative
Olivier Sperandio
![](https://research.pasteur.fr/wp-content/uploads/2016/06/research.pasteur.fr_bioservices-150x129.png)
Software
BioServices: a common Python package to access biological Web Services programmatically
Thomas Cokelaer
![](https://research.pasteur.fr/wp-content/uploads/2015/10/research.pasteur.fr_hiveplot2-150x150.jpg)
Software
SynTView
Pierre Lechat
![](https://research.pasteur.fr/wp-content/uploads/2016/06/research.pasteur.fr_dreamtools_logo-150x150.png)
Software
DREAMTools
Thomas Cokelaer
![](https://research.pasteur.fr/wp-content/uploads/2016/06/research.pasteur.fr_volcano-4-150x150.png)
Software
GDSCTools: drug discovery
Thomas Cokelaer
![](https://research.pasteur.fr/wp-content/uploads/2016/05/research.pasteur.fr_capture-d’écran-2016-05-18-à-13.10.31-150x150.jpg)
Software
MEMHDX – Mixed Effects Models for HDX experiments
Sébastien Brier • Stevenn Volant • Véronique Hourdel • Marie-Agnès Dillies
![](https://research.pasteur.fr/wp-content/uploads/2016/06/research.pasteur.fr_13570726-1-150x150.png)
Software
TissueMiner
Raphaël Etournay
![](https://research.pasteur.fr/wp-content/uploads/2015/12/research.pasteur.fr_logo-1-150x150.png)
Software
InferenceMAP
Jean-Baptiste Masson • Maxime Dahan†
![](https://research.pasteur.fr/wp-content/uploads/2015/03/genetic-strand-9.25.14-150x150.jpg)
Software
SARTools
Hugo Varet • Marie-Agnès Dillies • Jean-Yves Coppee • Sean Kennedy
![](https://research.pasteur.fr/wp-content/uploads/2016/05/research.pasteur.fr_shaman-150x137.png)
Software
SHAMAN: SHiny Application for Metagenomic ANalysis
Amine Ghozlane • Stevenn Volant
![](https://research.pasteur.fr/wp-content/uploads/2016/05/research.pasteur.fr_stimfit_512-150x150.png)
Software
Stimfit
Christoph Schmidt-Hieber
![](https://research.pasteur.fr/wp-content/uploads/2016/05/research.pasteur.fr_setup-01-1-150x150.png)
Software
Gnoom
Christoph Schmidt-Hieber
![](https://research.pasteur.fr/wp-content/uploads/2016/04/research.pasteur.fr_150716-4colors-b2-3colors-150x150.png)
Tool
Dual microscopy assay to discriminate Listeria cellular entry & vacuolar escape
Javier Pizarro-Cerda
![](https://research.pasteur.fr/wp-content/uploads/2016/03/research.pasteur.fr_txssdb-150x150.png)
Tool
TXSSdb, a database of protein secretion systems
Eduardo Rocha
![](https://research.pasteur.fr/wp-content/uploads/2016/02/research.pasteur.fr_logo_mousetube_big-150x150.png)
Tool